scholarly journals A Phenotype-Based Approach for the Substrate Water Status Forecast of Greenhouse Netted Muskmelon

Sensors ◽  
2019 ◽  
Vol 19 (12) ◽  
pp. 2673
Author(s):  
Liying Chang ◽  
Yilu Yin ◽  
Jialin Xiang ◽  
Qian Liu ◽  
Daren Li ◽  
...  
Keyword(s):  
Machine Learning ◽  
Near Infrared ◽  
Plant Root ◽  
Water Status ◽  
Irrigation Schedule ◽  
Forecast Accuracy ◽  
Phenotypic Traits ◽  
Growth Stages ◽  
Cultivation Substrate ◽  
Water Treatments

Cultivation substrate water status is of great importance to the production of netted muskmelon (Cucumis melo L. var. reticulatus Naud.). A prediction model for the substrate water status would be beneficial in irrigation schedule guidance. In this study, the machine learning random forest model was used to forecast plant substrate water status given the phenotypic traits throughout the muskmelon growing season. Here, two varieties of netted muskmelon, “Wanglu” and “Arus”, were planted in a greenhouse under four substrate water treatments and their phenotypic traits were measured by taking the images within the visible and near-infrared spectrums, respectively. Results showed that a simplified model outperformed the original model in forecasting speed, while it only uses the top five most significant contribution traits. The forecast accuracy reached up to 77.60%, 94.37%, and 90.01% for seedling, vine elongation, and fruit growth stages, respectively. Combining the imaging phenotypic traits and machine learning technique would provide a robust forecast of water status around the plant root zones.

scholarly journals Machine Learning Approach for Prescriptive Plant Breeding

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Kyle A. Parmley ◽  
Race H. Higgins ◽  
Baskar Ganapathysubramanian ◽  
Soumik Sarkar ◽  
Asheesh K. Singh
Keyword(s):  
Machine Learning ◽  
Plant Breeding ◽  
Seed Yield ◽  
Management Practices ◽  
Predictor Variables ◽  
Phenotypic Trait ◽  
Phenotypic Traits ◽  
Row Spacing ◽  
Growth Stages ◽  
Area Index

AbstractWe explored the capability of fusing high dimensional phenotypic trait (phenomic) data with a machine learning (ML) approach to provide plant breeders the tools to do both in-season seed yield (SY) prediction and prescriptive cultivar development for targeted agro-management practices (e.g., row spacing and seeding density). We phenotyped 32 SoyNAM parent genotypes in two independent studies each with contrasting agro-management treatments (two row spacing, three seeding densities). Phenotypic trait data (canopy temperature, chlorophyll content, hyperspectral reflectance, leaf area index, and light interception) were generated using an array of sensors at three growth stages during the growing season and seed yield (SY) determined by machine harvest. Random forest (RF) was used to train models for SY prediction using phenotypic traits (predictor variables) to identify the optimal temporal combination of variables to maximize accuracy and resource allocation. RF models were trained using data from both experiments and individually for each agro-management treatment. We report the most important traits agnostic of agro-management practices. Several predictor variables showed conditional importance dependent on the agro-management system. We assembled predictive models to enable in-season SY prediction, enabling the development of a framework to integrate phenomics information with powerful ML for prediction enabled prescriptive plant breeding.

scholarly journals Discrimination of plant root zone water status in greenhouse production based on phenotyping and machine learning techniques

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Doudou Guo ◽  
Jiaxiang Juan ◽  
Liying Chang ◽  
Jingjin Zhang ◽  
Danfeng Huang
Keyword(s):  
Machine Learning ◽  
Root Zone ◽  
Plant Root ◽  
Water Status ◽  
Machine Learning Techniques ◽  
Greenhouse Production ◽  
Learning Techniques ◽  
Zone Water

Monitoring Crop Water Status and Irrigation Needs Using Multispectral Airborne Sensors

HortScience ◽  
1995 ◽  
Vol 30 (4) ◽  
pp. 905D-905
Author(s):  
Thomas R. Clarke ◽  
M. Susan Moran
Keyword(s):  
Water Stress ◽  
Near Infrared ◽  
Water Status ◽  
Canopy Cover ◽  
Stress Index ◽  
Crop Water ◽  
Vegetative Cover ◽  
Crop Water Stress Index ◽  
Water Stress Index ◽  
Subsurface Drip

Water application efficiency can be improved by directly monitoring plant water status rather than depending on soil moisture measurements or modeled ET estimates. Plants receiving sufficient water through their roots have cooler leaves than those that are water-stressed, leading to the development of the Crop Water Stress Index based on hand-held infrared thermometry. Substantial error can occur in partial canopies, however, as exposed hot soil contributes to deceptively warm temperature readings. Mathematically comparing red and near-infrared reflectances provides a measure of vegetative cover, and this information was combined with thermal radiance to give a two-dimensional index capable of detecting water stress even with a low percentage of canopy cover. Thermal, red, and near-infrared images acquired over subsurface drip-irrigated cantaloupe fields demonstrated the method's ability to detect areas with clogged emitters, insufficient irrigation rate, and system water leaks.

scholarly journals Understanding Vine Hyperspectral Signature through Different Irrigation Plans: A First Step to Monitor Vineyard Water Status

2021 ◽  
Vol 13 (3) ◽  
pp. 536
Author(s):  
Eve Laroche-Pinel ◽  
Mohanad Albughdadi ◽  
Sylvie Duthoit ◽  
Véronique Chéret ◽  
Jacques Rousseau ◽  
...  
Keyword(s):  
Near Infrared ◽  
Water Status ◽  
Vegetation Indices ◽  
Remote Sensing Data ◽  
Short Wave ◽  
Spatial And Temporal Scales ◽  
Spectral Bands ◽  
Main Challenge ◽  
Spectral Scale ◽  
Grape Varieties

The main challenge encountered by Mediterranean winegrowers is water management. Indeed, with climate change, drought events are becoming more intense each year, dragging the yield down. Moreover, the quality of the vineyards is affected and the level of alcohol increases. Remote sensing data are a potential solution to measure water status in vineyards. However, important questions are still open such as which spectral, spatial, and temporal scales are adapted to achieve the latter. This study aims at using hyperspectral measurements to investigate the spectral scale adapted to measure their water status. The final objective is to find out whether it would be possible to monitor the vine water status with the spectral bands available in multispectral satellites such as Sentinel-2. Four Mediterranean vine plots with three grape varieties and different water status management systems are considered for the analysis. Results show the main significant domains related to vine water status (Short Wave Infrared, Near Infrared, and Red-Edge) and the best vegetation indices that combine these domains. These results give some promising perspectives to monitor vine water status.

scholarly journals Fully-automated root image analysis (faRIA)

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Narendra Narisetti ◽  
Michael Henke ◽  
Christiane Seiler ◽  
Astrid Junker ◽  
Jörn Ostermann ◽  
...  
Keyword(s):  
Near Infrared ◽  
Climatic Factors ◽  
Plant Root ◽  
Ground Truth ◽  
Parameter Tuning ◽  
Dice Coefficient ◽  
Powerful Analytical Tool ◽  
Manual Interaction ◽  
And Function ◽  
Noisy Background

AbstractHigh-throughput root phenotyping in the soil became an indispensable quantitative tool for the assessment of effects of climatic factors and molecular perturbation on plant root morphology, development and function. To efficiently analyse a large amount of structurally complex soil-root images advanced methods for automated image segmentation are required. Due to often unavoidable overlap between the intensity of fore- and background regions simple thresholding methods are, generally, not suitable for the segmentation of root regions. Higher-level cognitive models such as convolutional neural networks (CNN) provide capabilities for segmenting roots from heterogeneous and noisy background structures, however, they require a representative set of manually segmented (ground truth) images. Here, we present a GUI-based tool for fully automated quantitative analysis of root images using a pre-trained CNN model, which relies on an extension of the U-Net architecture. The developed CNN framework was designed to efficiently segment root structures of different size, shape and optical contrast using low budget hardware systems. The CNN model was trained on a set of 6465 masks derived from 182 manually segmented near-infrared (NIR) maize root images. Our experimental results show that the proposed approach achieves a Dice coefficient of 0.87 and outperforms existing tools (e.g., SegRoot) with Dice coefficient of 0.67 by application not only to NIR but also to other imaging modalities and plant species such as barley and arabidopsis soil-root images from LED-rhizotron and UV imaging systems, respectively. In summary, the developed software framework enables users to efficiently analyse soil-root images in an automated manner (i.e. without manual interaction with data and/or parameter tuning) providing quantitative plant scientists with a powerful analytical tool.

scholarly journals Prediction of Maize Yield at the City Level in China Using Multi-Source Data

2021 ◽  
Vol 13 (1) ◽  
pp. 146
Author(s):  
Xinxin Chen ◽  
Lan Feng ◽  
Rui Yao ◽  
Xiaojun Wu ◽  
Jia Sun ◽  
...  
Keyword(s):  
Machine Learning ◽  
Satellite Data ◽  
Vegetation Index ◽  
Maize Yield ◽  
Machine Learning Algorithms ◽  
Shortwave Radiation ◽  
Growth Stages ◽  
Climate Data ◽  
Early Peak ◽  
The City

Maize is a widely grown crop in China, and the relationships between agroclimatic parameters and maize yield are complicated, hence, accurate and timely yield prediction is challenging. Here, climate, satellite data, and meteorological indices were integrated to predict maize yield at the city-level in China from 2000 to 2015 using four machine learning approaches, e.g., cubist, random forest (RF), extreme gradient boosting (Xgboost), and support vector machine (SVM). The climate variables included the diffuse flux of photosynthetic active radiation (PDf), the diffuse flux of shortwave radiation (SDf), the direct flux of shortwave radiation (SDr), minimum temperature (Tmn), potential evapotranspiration (Pet), vapor pressure deficit (Vpd), vapor pressure (Vap), and wet day frequency (Wet). Satellite data, including the enhanced vegetation index (EVI), normalized difference vegetation index (NDVI), and adjusted vegetation index (SAVI) from the Moderate Resolution Imaging Spectroradiometer (MODIS), were used. Meteorological indices, including growing degree day (GDD), extreme degree day (EDD), and the Standardized Precipitation Evapotranspiration Index (SPEI), were used. The results showed that integrating all climate, satellite data, and meteorological indices could achieve the highest accuracy. The highest estimated correlation coefficient (R) values for the cubist, RF, SVM, and Xgboost methods were 0.828, 0.806, 0.742, and 0.758, respectively. The climate, satellite data, or meteorological indices inputs from all growth stages were essential for maize yield prediction, especially in late growth stages. R improved by about 0.126, 0.117, and 0.143 by adding climate data from the early, peak, and late-period to satellite data and meteorological indices from all stages via the four machine learning algorithms, respectively. R increased by 0.016, 0.016, and 0.017 when adding satellite data from the early, peak, and late stages to climate data and meteorological indices from all stages, respectively. R increased by 0.003, 0.032, and 0.042 when adding meteorological indices from the early, peak, and late stages to climate and satellite data from all stages, respectively. The analysis found that the spatial divergences were large and the R value in Northwest region reached 0.942, 0.904, 0.934, and 0.850 for the Cubist, RF, SVM, and Xgboost, respectively. This study highlights the advantages of using climate, satellite data, and meteorological indices for large-scale maize yield estimation with machine learning algorithms.

Future opportunities of proximal near infrared spectroscopy approaches to determine the variability of vineyard water status

2017 ◽  
Vol 23 (3) ◽  
pp. 409-414 ◽  
Author(s):  
M.P. Diago ◽  
A. Bellincontro ◽  
M. Scheidweiler ◽  
J. Tardaguila ◽  
S. Tittmann ◽  
...  
Keyword(s):  
Infrared Spectroscopy ◽  
Near Infrared Spectroscopy ◽  
Near Infrared ◽  
Water Status

scholarly journals Nanoprinted high-neuron-density optical linear perceptrons performing near-infrared inference on a CMOS chip

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Elena Goi ◽  
Xi Chen ◽  
Qiming Zhang ◽  
Benjamin P. Cumming ◽  
Steffen Schoenhardt ◽  
...  
Keyword(s):  
Machine Learning ◽  
High Speed ◽  
Near Infrared ◽  
Single Layer ◽  
Infrared Region ◽  
Optical Devices ◽  
Medical Diagnostics ◽  
Oxide Semiconductor ◽  
Process Data ◽  
Neuron Density

AbstractOptical machine learning has emerged as an important research area that, by leveraging the advantages inherent to optical signals, such as parallelism and high speed, paves the way for a future where optical hardware can process data at the speed of light. In this work, we present such optical devices for data processing in the form of single-layer nanoscale holographic perceptrons trained to perform optical inference tasks. We experimentally show the functionality of these passive optical devices in the example of decryptors trained to perform optical inference of single or whole classes of keys through symmetric and asymmetric decryption. The decryptors, designed for operation in the near-infrared region, are nanoprinted on complementary metal-oxide–semiconductor chips by galvo-dithered two-photon nanolithography with axial nanostepping of 10 nm1,2, achieving a neuron density of >500 million neurons per square centimetre. This power-efficient commixture of machine learning and on-chip integration may have a transformative impact on optical decryption3, sensing4, medical diagnostics5 and computing6,7.

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