Sentinel-2 Data for Precision Agriculture?—A UAV-Based Assessment

An approach of exploiting and assessing the potential of Sentinel-2 data in the context of precision agriculture by using data from an unmanned aerial vehicle (UAV) is presented based on a four-year dataset. An established model for the estimation of the green area index (GAI) of winter wheat from a UAV-based multispectral camera was used to calibrate the Sentinel-2 data. Large independent datasets were used for evaluation purposes. Furthermore, the potential of the satellite-based GAI-predictions for crop monitoring and yield prediction was tested. Therefore, the total absorbed photosynthetic radiation between spring and harvest was calculated with satellite and UAV data and correlated with the final grain yield. Yield maps at the same resolution were generated by combining yield data on a plot level with a UAV-based crop coverage map. The best tested model for satellite-based GAI-prediction was obtained by combining the near-, infrared- and Red Edge-waveband in a simple ratio (R2 = 0.82, mean absolute error = 0.52 m2/m2). Yet, the Sentinel-2 data seem to depict average GAI-developments through the seasons, rather than to map site-specific variations at single acquisition dates. The results show that the lower information content of the satellite-based crop monitoring might be mainly traced back to its coarser Red Edge-band. Additionally, date-specific effects within the Sentinel-2 data were detected. Due to cloud coverage, the temporal resolution was found to be unsatisfactory as well. These results emphasize the need for further research on the applicability of the Sentinel-2 data and a cautious use in the context of precision agriculture.

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Spaceborne Estimation of Leaf Area Index in Cotton, Tomato, and Wheat Using Sentinel-2

Land ◽

10.3390/land10050505 ◽

2021 ◽

Vol 10 (5) ◽

pp. 505

Author(s):

Gregoriy Kaplan ◽

Offer Rozenstein

Keyword(s):

Water Vapor ◽

Leaf Area Index ◽

Leaf Area ◽

Vegetation Index ◽

Near Infrared ◽

Linear Regression Models ◽

Area Index ◽

Estimation Performance ◽

Red Edge ◽

Sentinel 2

Satellite remote sensing is a useful tool for estimating crop variables, particularly Leaf Area Index (LAI), which plays a pivotal role in monitoring crop development. The goal of this study was to identify the optimal Sentinel-2 bands for LAI estimation and to derive Vegetation Indices (VI) that are well correlated with LAI. Linear regression models between time series of Sentinel-2 imagery and field-measured LAI showed that Sentinel-2 Band-8A—Narrow Near InfraRed (NIR) is more accurate for LAI estimation than the traditionally used Band-8 (NIR). Band-5 (Red edge-1) showed the lowest performance out of all red edge bands in tomato and cotton. A novel finding was that Band 9 (Water vapor) showed a very high correlation with LAI. Bands 1, 2, 3, 4, 5, 11, and 12 were saturated at LAI ≈ 3 in cotton and tomato. Bands 6, 7, 8, 8A, and 9 were not saturated at high LAI values in cotton and tomato. The tomato, cotton, and wheat LAI estimation performance of ReNDVI (R2 = 0.79, 0.98, 0.83, respectively) and two new VIs (WEVI (Water vapor red Edge Vegetation Index) (R2 = 0.81, 0.96, 0.71, respectively) and WNEVI (Water vapor narrow NIR red Edge Vegetation index) (R2 = 0.79, 0.98, 0.79, respectively)) were higher than the LAI estimation performance of the commonly used NDVI (R2 = 0.66, 0.83, 0.05, respectively) and other common VIs tested in this study. Consequently, reNDVI, WEVI, and WNEVI can facilitate more accurate agricultural monitoring than traditional VIs.

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Data assimilation of remote sensing data for farm scale maize fertilization in northern Italy

10.5194/egusphere-egu2020-15941 ◽

2020 ◽

Author(s):

Calogero Schillaci ◽

Edoardo Tomasoni ◽

Marco Acutis ◽

Alessia Perego

Keyword(s):

Spatial Resolution ◽

Spatial Data ◽

Precision Agriculture ◽

Vegetation Index ◽

Vegetation Indices ◽

Northern Italy ◽

Yield Data ◽

Batch Mode ◽

Area Index ◽

Sentinel 2

<p>To improve nitrogen fertilization is well known that vegetation indices can offer a picture of the nutritional status of the crop. In this study, field management information (maize sowing and harvesting dates, tillage, fertilization) and estimated vegetation indices VI (Sentinel 2 derived Leaf Area Index LAI, Normalized Difference Vegetation Index NDVI, Fraction of Photosynthetic radiation fPAR) were analysed to develop a batch-mode VIs routine to manage high dimensional temporal and spatial data for Decision Support Systems DSS in precision agriculture, and to optimize the maize N fertilization in the field. The study was carried out in maize (2017-2018) on a farm located in Mantua (northern Italy); the soil is a Vertic Calciustepts with a fine silty texture with moderate content of carbonates. A collection of Sentinel 2 images (with <25% cloud cover) were processed using Graph Processing Tool (GPT). This tool is used through the console to execute Sentinel Application Platform (SNAP) raster data operators in batch-mode. The workflow applied on the Sentinel images consisted in: resampling each band to 10m pixel size, splitting data into subsets according to the farm boundaries using Region of Interest (ROI). Biophysical Operator based on Biophysical Toolbox was used to derive LAI, fPAR for the estimation of maize vegetation indices from emergence until senescence. Yield data were acquired with a volumetric yield sensing in a combine harvester. Fertilization plans were then calculated for each field prior to the side-dressing fertilization. The routine is meant as a user-friendly tool to obtain time series of assimilated VIs of middle and high spatial resolution for field crop fertilization. It also overcomes the failures of the open source graphic user interface of SNAP. For the year 2018, yield data were related to the 34 LAI derived from Sentinel 2a products at 10 m spatial resolution (R<sup>2</sup>=0.42). This result underlined a trend that can be further studied to define a cluster strategy based on soil properties. As a further step, we will test whether spatial differences in assimilated VIs, integrated with yield data, can guide the nitrogen top-dress fertilization in quantitative way more accurately than a single image or a collection of single images.</p>

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Estimating Crop Biophysical Parameters Using Machine Learning Algorithms and Sentinel-2 Imagery

Remote Sensing ◽

10.3390/rs13214314 ◽

2021 ◽

Vol 13 (21) ◽

pp. 4314

Author(s):

Mahlatse Kganyago ◽

Paidamwoyo Mhangara ◽

Clement Adjorlolo

Keyword(s):

Machine Learning ◽

Chlorophyll Content ◽

Precision Agriculture ◽

Learning Algorithms ◽

Machine Learning Algorithms ◽

Gradient Boosting ◽

Biophysical Parameters ◽

Area Index ◽

Crop Monitoring ◽

Sentinel 2

Global food security is critical to eliminating hunger and malnutrition. In the changing climate, farmers in developing countries must adopt technologies and farming practices such as precision agriculture (PA). PA-based approaches enable farmers to cope with frequent and intensified droughts and heatwaves, optimising yields, increasing efficiencies, and reducing operational costs. Biophysical parameters such as Leaf Area Index (LAI), Leaf Chlorophyll Content (LCab), and Canopy Chlorophyll Content (CCC) are essential for characterising field-level spatial variability and thus are necessary for enabling variable rate application technologies, precision irrigation, and crop monitoring. Moreover, robust machine learning algorithms offer prospects for improving the estimation of biophysical parameters due to their capability to deal with non-linear data, small samples, and noisy variables. This study compared the predictive performance of sparse Partial Least Squares (sPLS), Random Forest (RF), and Gradient Boosting Machines (GBM) for estimating LAI, LCab, and CCC with Sentinel-2 imagery in Bothaville, South Africa and identified, using variable importance measures, the most influential bands for estimating crop biophysical parameters. The results showed that RF was superior in estimating all three biophysical parameters, followed by GBM which was better in estimating LAI and CCC, but not LCab, where sPLS was relatively better. Since all biophysical parameters could be achieved with RF, it can be considered a good contender for operationalisation. Overall, the findings in this study are significant for future biophysical product development using RF to reduce reliance on many algorithms for specific parameters, thus facilitating the rapid extraction of actionable information to support PA and crop monitoring activities.

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Assessing Leaf Biomass of Agave sisalana Using Sentinel-2 Vegetation Indices

Remote Sensing ◽

10.3390/rs13020233 ◽

2021 ◽

Vol 13 (2) ◽

pp. 233

Author(s):

Ilja Vuorinne ◽

Janne Heiskanen ◽

Petri K. E. Pellikka

Keyword(s):

Near Infrared ◽

Vegetation Indices ◽

Fibre Production ◽

Additive Models ◽

Leaf Biomass ◽

Ground Vegetation ◽

Perennial Crop ◽

Red Edge ◽

Agave Sisalana ◽

Sentinel 2

Biomass is a principal variable in crop monitoring and management and in assessing carbon cycling. Remote sensing combined with field measurements can be used to estimate biomass over large areas. This study assessed leaf biomass of Agave sisalana (sisal), a perennial crop whose leaves are grown for fibre production in tropical and subtropical regions. Furthermore, the residue from fibre production can be used to produce bioenergy through anaerobic digestion. First, biomass was estimated for 58 field plots using an allometric approach. Then, Sentinel-2 multispectral satellite imagery was used to model biomass in an 8851-ha plantation in semi-arid south-eastern Kenya. Generalised Additive Models were employed to explore how well biomass was explained by various spectral vegetation indices (VIs). The highest performance (explained deviance = 76%, RMSE = 5.15 Mg ha−1) was achieved with ratio and normalised difference VIs based on the green (R560), red-edge (R740 and R783), and near-infrared (R865) spectral bands. Heterogeneity of ground vegetation and resulting background effects seemed to limit model performance. The best performing VI (R740/R783) was used to predict plantation biomass that ranged from 0 to 46.7 Mg ha−1 (mean biomass 10.6 Mg ha−1). The modelling showed that multispectral data are suitable for assessing sisal leaf biomass at the plantation level and in individual blocks. Although these results demonstrate the value of Sentinel-2 red-edge bands at 20-m resolution, the difference from the best model based on green and near-infrared bands at 10-m resolution was rather small.

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Nondestructive estimation of potato yield using relative variables derived from multi-period LAI and hyperspectral data based on weighted growth stage

Plant Methods ◽

10.1186/s13007-020-00693-3 ◽

2020 ◽

Vol 16 (1) ◽

Author(s):

Shanjun Luo ◽

Yingbin He ◽

Qian Li ◽

Weihua Jiao ◽

Yaqiu Zhu ◽

...

Keyword(s):

Precision Agriculture ◽

Growth Stage ◽

Estimation Error ◽

Potato Yield ◽

Hyperspectral Data ◽

Single Stage ◽

Accurate Estimation ◽

Yield Estimation ◽

Area Index ◽

Red Edge

Abstract Background The accurate estimation of potato yield at regional scales is crucial for food security, precision agriculture, and agricultural sustainable development. Methods In this study, we developed a new method using multi-period relative vegetation indices (rVIs) and relative leaf area index (rLAI) data to improve the accuracy of potato yield estimation based on the weighted growth stage. Two experiments of field and greenhouse (water and nitrogen fertilizer experiments) in 2018 were performed to obtain the spectra and LAI data of the whole growth stage of potato. Then the weighted growth stage was determined by three weighting methods (improved analytic hierarchy process method, IAHP; entropy weight method, EW; and optimal combination weighting method, OCW) and the Slogistic model. A comparison of the estimation performance of rVI-based and rLAI-based models with a single and weighted stage was completed. Results The results showed that among the six test rVIs, the relative red edge chlorophyll index (rCIred edge) was the optimal index of the single-stage estimation models with the correlation with potato yield. The most suitable single stage for potato yield estimation was the tuber expansion stage. For weighted growth stage models, the OCW-LAI model was determined as the best one to accurately predict the potato yield with an adjusted R2 value of 0.8333, and the estimation error about 8%. Conclusion This study emphasizes the importance of inconsistent contributions of multi-period or different types of data to the results when they are used together, and the weights need to be considered.

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Improving Field-Scale Wheat LAI Retrieval Based on UAV Remote-Sensing Observations and Optimized VI-LUTs

Remote Sensing ◽

10.3390/rs11202456 ◽

2019 ◽

Vol 11 (20) ◽

pp. 2456 ◽

Cited By ~ 5

Author(s):

Wanxue Zhu ◽

Zhigang Sun ◽

Yaohuan Huang ◽

Jianbin Lai ◽

Jing Li ◽

...

Keyword(s):

Remote Sensing ◽

Precision Agriculture ◽

Vegetation Index ◽

Management Practices ◽

Near Infrared ◽

Lookup Table ◽

Field Scale ◽

Area Index ◽

Biophysical Parameter ◽

Retrieval Accuracy

Leaf area index (LAI) is a key biophysical parameter for monitoring crop growth status, predicting crop yield, and quantifying crop variability in agronomic applications. Mapping the LAI at the field scale using multispectral cameras onboard unmanned aerial vehicles (UAVs) is a promising precision-agriculture application with specific requirements: The LAI retrieval method should be (1) robust so that crop LAI can be estimated with similar accuracy and (2) easy to use so that it can be applied to the adjustment of field management practices. In this study, three UAV remote-sensing missions (UAVs with Micasense RedEdge-M and Cubert S185 cameras) were carried out over six experimental plots from 2018 to 2019 to investigate the performance of reflectance-based lookup tables (LUTs) and vegetation index (VI)-based LUTs generated from the PROSAIL model for wheat LAI retrieval. The effects of the central wavelengths and bandwidths for the VI calculations on the LAI retrieval were further examined. We found that the VI-LUT strategy was more robust and accurate than the reflectance-LUT strategy. The differences in the LAI retrieval accuracy among the four VI-LUTs were small, although the improved modified chlorophyll absorption ratio index-lookup table (MCARI2-LUT) and normalized difference vegetation index-lookup table (NDVI-LUT) performed slightly better. We also found that both of the central wavelengths and bandwidths of the VIs had effects on the LAI retrieval. The VI-LUTs with optimized central wavelengths (red = 612 nm, near-infrared (NIR) = 756 nm) and narrow bandwidths (~4 nm) improved the wheat LAI retrieval accuracy (R2 ≥ 0.75). The results of this study provide an alternative method for retrieving crop LAI, which is robust and easy use for precision-agriculture applications and may be helpful for designing UAV multispectral cameras for agricultural monitoring.

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Quantifying Uncertainty and Bridging the Scaling Gap in the Retrieval of Leaf Area Index by Coupling Sentinel-2 and UAV Observations

Remote Sensing ◽

10.3390/rs12111843 ◽

2020 ◽

Vol 12 (11) ◽

pp. 1843 ◽

Cited By ~ 1

Author(s):

Andrew Revill ◽

Anna Florence ◽

Alasdair MacArthur ◽

Stephen Hoad ◽

Robert Rees ◽

...

Keyword(s):

Spatial Heterogeneity ◽

Leaf Area Index ◽

Leaf Area ◽

Growth Stages ◽

Two Stage ◽

Area Index ◽

Field Surveys ◽

Red Edge ◽

Calibration Approach ◽

Sentinel 2

Leaf area index (LAI) estimates can inform decision-making in crop management. The European Space Agency’s Sentinel-2 satellite, with observations in the red-edge spectral region, can monitor crops globally at sub-field spatial resolutions (10–20 m). However, satellite LAI estimates require calibration with ground measurements. Calibration is challenged by spatial heterogeneity and scale mismatches between field and satellite measurements. Unmanned Aerial Vehicles (UAVs), generating high-resolution (cm-scale) LAI estimates, provide intermediary observations that we use here to characterise uncertainty and reduce spatial scaling discrepancies between Sentinel-2 observations and field surveys. We use a novel UAV multispectral sensor that matches Sentinel-2 spectral bands, flown in conjunction with LAI ground measurements. UAV and field surveys were conducted on multiple dates—coinciding with different wheat growth stages—that corresponded to Sentinel-2 overpasses. We compared chlorophyll red-edge index (CIred-edge) maps, derived from the Sentinel-2 and UAV platforms. We used Gaussian processes regression machine learning to calibrate a UAV model for LAI, based on ground data. Using the UAV LAI, we evaluated a two-stage calibration approach for generating robust LAI estimates from Sentinel-2. The agreement between Sentinel-2 and UAV CIred-edge values increased with growth stage—R2 ranged from 0.32 (stem elongation) to 0.75 (milk development). The CIred-edge variance between the two platforms was more comparable later in the growing season due to a more homogeneous and closed wheat canopy. The single-stage Sentinel-2 LAI calibration (i.e., direct calibration from ground measurements) performed poorly (mean R2 = 0.29, mean NRMSE = 17%) when compared to the two-stage calibration using the UAV data (mean R2 = 0.88, mean NRMSE = 8%). The two-stage approach reduced both errors and biases by >50%. By upscaling ground measurements and providing more representative model training samples, UAV observations provide an effective and viable means of enhancing Sentinel-2 wheat LAI retrievals. We anticipate that our UAV calibration approach to resolving spatial heterogeneity would enhance the retrieval accuracy of LAI and additional biophysical variables for other arable crop types and a broader range of vegetation cover types.

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Red-Edge Band Vegetation Indices for Leaf Area Index Estimation From Sentinel-2/MSI Imagery

IEEE Transactions on Geoscience and Remote Sensing ◽

10.1109/tgrs.2019.2940826 ◽

2020 ◽

Vol 58 (2) ◽

pp. 826-840 ◽

Cited By ~ 5

Author(s):

Yuanheng Sun ◽

Qiming Qin ◽

Huazhong Ren ◽

Tianyuan Zhang ◽

Shanshan Chen

Keyword(s):

Leaf Area Index ◽

Leaf Area ◽

Vegetation Indices ◽

Area Index ◽

Red Edge ◽

Index Estimation ◽

Edge Band ◽

Sentinel 2

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VIS-NIR, Red-Edge and NIR-Shoulder Based Normalized Vegetation Indices Response to Co-Varying Leaf and Canopy Structural Traits in Heterogeneous Grasslands

Remote Sensing ◽

10.3390/rs12142254 ◽

2020 ◽

Vol 12 (14) ◽

pp. 2254 ◽

Cited By ~ 1

Author(s):

Hafiz Ali Imran ◽

Damiano Gianelle ◽

Duccio Rocchini ◽

Michele Dalponte ◽

M. Pilar Martín ◽

...

Keyword(s):

Near Infrared ◽

Spatial Scales ◽

Vegetation Indices ◽

Radiative Transfer Model ◽

Transfer Model ◽

Sharp Change ◽

Full Potential ◽

Area Index ◽

Red Edge ◽

Temporal And Spatial

Red-edge (RE) spectral vegetation indices (SVIs)—combining bands on the sharp change region between near infrared (NIR) and visible (VIS) bands—alongside with SVIs solely based on NIR-shoulder bands (wavelengths 750–900 nm) have been shown to perform well in estimating leaf area index (LAI) from proximal and remote sensors. In this work, we used RE and NIR-shoulder SVIs to assess the full potential of bands provided by Sentinel-2 (S-2) and Sentinel-3 (S-3) sensors at both temporal and spatial scales for grassland LAI estimations. Ground temporal and spatial observations of hyperspectral reflectance and LAI were carried out at two grassland sites (Monte Bondone, Italy, and Neustift, Austria). A strong correlation (R2 > 0.8) was observed between grassland LAI and both RE and NIR-shoulder SVIs on a temporal basis, but not on a spatial basis. Using the PROSAIL Radiative Transfer Model (RTM), we demonstrated that grassland structural heterogeneity strongly affects the ability to retrieve LAI, with high uncertainties due to structural and biochemical PTs co-variation. The RENDVI783.740 SVI was the least affected by traits co-variation, and more studies are needed to confirm its potential for heterogeneous grasslands LAI monitoring using S-2, S-3, or Gaofen-5 (GF-5) and PRISMA bands.

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The Value of Sentinel-2 Spectral Bands for the Assessment of Winter Wheat Growth and Development

Remote Sensing ◽

10.3390/rs11172050 ◽

2019 ◽

Vol 11 (17) ◽

pp. 2050 ◽

Cited By ~ 8

Author(s):

Andrew Revill ◽

Anna Florence ◽

Alasdair MacArthur ◽

Stephen Hoad ◽

Robert Rees ◽

...

Keyword(s):

Winter Wheat ◽

Chlorophyll Content ◽

Management Practices ◽

Near Infrared ◽

Spectral Characteristics ◽

Crop Management ◽

Area Index ◽

Spectral Bands ◽

The Mean ◽

Sentinel 2

Leaf Area Index (LAI) and chlorophyll content are strongly related to plant development and productivity. Spatial and temporal estimates of these variables are essential for efficient and precise crop management. The availability of open-access data from the European Space Agency’s (ESA) Sentinel-2 satellite—delivering global coverage with an average 5-day revisit frequency at a spatial resolution of up to 10 metres—could provide estimates of these variables at unprecedented (i.e., sub-field) resolution. Using synthetic data, past research has demonstrated the potential of Sentinel-2 for estimating crop variables. Nonetheless, research involving a robust analysis of the Sentinel-2 bands for supporting agricultural applications is limited. We evaluated the potential of Sentinel-2 data for retrieving winter wheat LAI, leaf chlorophyll content (LCC) and canopy chlorophyll content (CCC). In coordination with destructive and non-destructive ground measurements, we acquired multispectral data from an Unmanned Aerial Vehicle (UAV)-mounted sensor measuring key Sentinel-2 spectral bands (443 to 865 nm). We applied Gaussian processes regression (GPR) machine learning to determine the most informative Sentinel-2 bands for retrieving each of the variables. We further evaluated the GPR model performance when propagating observation uncertainty. When applying the best-performing GPR models without propagating uncertainty, the retrievals had a high agreement with ground measurements—the mean R2 and normalised root-mean-square error (NRMSE) were 0.89 and 8.8%, respectively. When propagating uncertainty, the mean R2 and NRMSE were 0.82 and 11.9%, respectively. When accounting for measurement uncertainty in the estimation of LAI and CCC, the number of most informative Sentinel-2 bands was reduced from four to only two—the red-edge (705 nm) and near-infrared (865 nm) bands. This research demonstrates the value of the Sentinel-2 spectral characteristics for retrieving critical variables that can support more sustainable crop management practices.

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