scholarly journals Microcystis species and their toxigenic strains in phytoplankton of ten Bulgarian waterbodies

Botanica ◽  
2021 ◽  
pp. 77-94
Author(s):  
Blagoy Uzunov ◽  
Katerina Stefanova ◽  
Mariana Radkova ◽  
Jean-Pierre Descy ◽  
Georg Gärtner ◽  
...  

The summer phytoplankton structure of ten Bulgarian waterbodies was studied by HPLC analysis of marker pigments, light microscopy (LM) and PCR amplification of mcyB and mcyE gene sequences. The aim was to detect biodiversity and spread of toxigenic strains of potential microcystin producers and the important bloom-forming genus Microcystis in particular. The screening was done in three waterbodies, where Microcystis had already been found (Lakes Ezerets and Durankulak and Reservoir Koprinka), three waterbodies from which it had not been reported (Reservoirs Shilkovtsi, Zhrebchevo, Suedinenie) and four reservoirs that were sampled for the first time (Malka Smolnitsa, Plachidol 2, Preselka, Duvanli). LM and HPLC data similarly showed that cyanoprokaryotes contributed significantly to the total phytoplankton composition (29%) and biomass (15–87%) in nine sampled waterbodies. Microcystis aeruginosa, M. natans, M. smithii, M. wesenbergii, Microcystis spp., M. cf. comperei and M. pseudofilamentosa, were identified using LM (the last two tropical species were found for the first time in the country). Despite the low contribution of Microcystis to the phytoplankton diversity (1–4 taxa per sample) and to the total phytoplankton biomass (< 0.01–0.5%), 57 toxigenic strains of this genus were revealed by PCR, most of which demonstrated high similarity with NCBI M. aeruginosa and M. wesenbergii strains.

Plant Disease ◽  
2021 ◽  
Author(s):  
Aminat Korede Oyetunde ◽  
Yao Kolombia ◽  
Omowumi B Adewuyi ◽  
Steve Olaoluwa Afolami ◽  
Daniel Leigh Coyne

Meloidogyne enterolobii is a highly polyphagous tropical species of root knot nematode. It has been recorded to be causing major damage to a range of economically important crops and is increasingly recorded from new locations. The morphological similarity and overlap of characteristics with other commonly occurring species, especially M. incognita, has confused its diagnosis using morphometrics. Cassava (Manihot esculenta) is an important crop across the tropics, including Africa, where it is among the most important root and tuber crop for food security. Cassava can be heavily infected by root knot nematodes, which can incur heavy production losses. The main species known to affect cassava are M. incognita and M. javanica (Coyne and Affokpon, 2018). With the exception of one report of M. enterolobii morphologically identified from cassava roots during a survey in Brazil (Rosa et al., 2014), there is no record with molecular confirmation of it infecting the crop. In the absence of any molecular or isozyme confirmation, diagnosis of M. enterolobii is difficult to determine. In the current study, the species responsible for substantial galling damage (Fig. 1A) on several cassava roots growing in Ibadan, Nigeria (7°22′39″ N; 3°54′21″ E) were diagnosed. DNA isolated from juveniles recovered using a modified Baermann method (Hooper, 1986) from these roots was used for PCR amplification of the mitochondrial Nad5 using primer pair, NAD5F2 (5’-TATTTTTTGTTTGAGATATATTAG-3’) and NAD5R1 (5’-CGTGAATCTTGATTTTCCATTTTT-3’). The 515 bp PCR DNA product was sequenced on both strands (GenBank Accession No. MW965454) and found to be 100% identical to M. enterolobii with those in the DNA sequence database (KU372358, KU372359) (Janssen et al., 2016; Kolombia et al., 2017). In addition, M. incognita was also recovered from the galled roots and identified using the same primers (GenBank Accession No. MW965455) indicating a combined species infection (Fig. 2). Cultures of M. enterolobii, developed from single egg masses were maintained on tomato plants and used to assess infection on cassava in 10 L pots filled with steam sterilized loam soil in the screenhouse. Cassava cv. IITA-TMS-IBA070593 cuttings planted in June, 2018 and repeated in April, 2019 were inoculated with 1,000 juveniles per pot at three weeks after planting, and then maintained for four months before quantifying the nematode densities in both roots and soil. Nematode reproduction factor (RF), calculated from total nematode densities (n=8) from soil and roots was as high as 44.3, compared to uninoculated controls. Molecular diagnostics of M. enterolobii, as above, confirms unequivocally the host status of cassava to this nematode. This study reports for the first time the infection of cassava by M. enterolobii under field conditions in Africa and for the first time demonstrates the host suitability of cassava to this nematode (Fig. 1B). M. enterolobii is among the most commonly occurring root-knot nematode species in West Africa (dos Santos et al., 2019). It is therefore anticipated that M. enterolobii has long been infecting, especially in West Africa, but has been overlooked due to its morphological similarity with M. incognita. Given the high reproductive ability of M. enterolobii on cassava and its highly aggressive nature on a range of crops, it is likely that it is causing, or will result in, high levels of losses on cassava in Africa.


1998 ◽  
Vol 36 (8) ◽  
pp. 2178-2182 ◽  
Author(s):  
Haru Kato ◽  
Naoki Kato ◽  
Kunitomo Watanabe ◽  
Naoichi Iwai ◽  
Haruhi Nakamura ◽  
...  

Toxigenic strains of Clostridium difficile have been reported to produce both toxins A and B nearly always, and nontoxigenic strains have been reported to produce neither of these toxins. Recent studies indicate that it is not always true. We established a PCR assay to differentiate toxin A-negative, toxin B-positive (toxin A−, toxin B+) strains from both toxin-positive (toxin A+, toxin B+) strains and both toxin-negative (toxin A−, toxin B−) strains as an alternative to cell culture assay and enzyme-linked immunosorbent assay (ELISA). By using the PCR primer set NK11 and NK9 derived from the repeating sequences of the toxin A gene, a shorter segment (ca. 700 bp) was amplified from toxin A−, toxin B+ strains compared to the size of the segment amplified from toxin A+, toxin B+ strains (ca. 1,200 bp), and no product was amplified from toxin A−, toxin B− strains. We examined a total of 421 C. difficile isolates by PCR. Of these, 48 strains showed a shorter segment by the PCR, were negative by ELISAs for the detection of toxin A, and were positive by cell culture assay. Although the cytotoxin produced by the toxin A−, toxin B+ strains was neutralized by anti-toxin B serum, the appearance of the cytotoxic effects on Vero cell monolayers was distinguishable from that of toxin A+, toxin B+ strains. By immunoblotting, the 44 toxin A−, toxin B+ strains were typed to serogroup F and the remaining four strains were serogroup X. Pulsed-field gel electrophoresis separated the 48 strains into 19 types. The PCR assay for the detection of the repeating sequences combined with PCR amplification of the nonrepeating sequences of either the toxin A or the toxin B gene is indicated to be useful for differentiating toxin A−, toxin B+ strains from toxin A+, toxin B+ and toxin A−, toxin B− strains and will contribute to elucidation of the precise role of toxin A−, toxin B+ strains in intestinal diseases.


2019 ◽  
Vol 2 ◽  
Author(s):  
Blagoy Uzunov ◽  
Maya Stoyneva-Gärtner ◽  
Georg Gärtner ◽  
Mariana Radkova ◽  
Katerina Stefanova

The results from the investigation of the phytoplankton in nine shallow wetlands, situated in Central and Eastern Bulgaria, conducted in the frame of recent projects related to identifying harmful algal blooms and algal toxins in the country are demonstrated. Therefore, the focus is on the cyanoprokaryotes and their toxigenic species in particular. The species were identified using conventional light microscopy, while for distinguishing the toxigenic species and strains PCR-based molecular methods were applied. Cyanoprokaryotes comprised about 30% of the total phytoplankton biodiversity of the studied wetlands and were unevenly spread among them. The presence and spread of toxigenic strains in the studied wetlands also did not show any strong geographical pattern. Taxonomic problems related with the evaluation of the real cyanoprokaryotic biodiversity and potential alien or invasive character of the morphospecies are discussed.


2017 ◽  
Vol 63 (5) ◽  
pp. 450-463 ◽  
Author(s):  
Zoulikha Bouchiba ◽  
Zineb Faiza Boukhatem ◽  
Zohra Ighilhariz ◽  
Nouria Derkaoui ◽  
Benaissa Kerdouh ◽  
...  

A total of 51 bacterial strains were isolated from root nodules of Scorpiurus muricatus sampled from 6 regions of western Algeria. Strain diversity was assessed by rep-PCR amplification fingerprinting, which grouped the isolates into 28 different clusters. Partial nucleotide sequencing of the 16S rRNA gene and BLAST analysis revealed that root nodules of S. muricatus were colonized by different species close to Rhizobium vignae, Rhizobium radiobacter, Rhizobium leguminosarum, Phyllobacterium ifriqiyense, Phyllobacterium endophyticum, Starkeya sp., and Pseudomonas sp. However, none of these strains was able to form nodules on its host plant; even nodC was present in a single strain (SMT8a). The inoculation test showed a great improvement in the growth of inoculated plants compared with noninoculated control plants. A significant amount of indole acetic acid was produced by some strains, but only 2 strains could solubilize phosphate. In this report we described for the first time the diversity of bacteria isolated from root nodules of S. muricatus growing in different regions in western Algeria and demonstrated their potential use in promoting plant growth.


1981 ◽  
Vol 38 (5) ◽  
pp. 524-534 ◽  
Author(s):  
Bruce D. LaZerte ◽  
Susan Watson

We tested the hypothesis that total phytoplankton biomass can predict phytoplankton community structure independent of its taxonomic composition. From a 2-yr study on Lake Memphremagog, Quebec, which exhibits a marked axial trophic gradient, 133 samples were rarefied to uniform count sizes and a range of diversity numbers, based on proportional biomass, was calculated for each. Biomass is a good predictor of evenness (0.7 < R < 0.9), but not species richness (0.1 < R < 0.3), and this prediction is independent of changes in taxonomic composition. Species richness is more directly related to season and changes in taxonomic composition.Key words: diversity, evenness, species richness, phytoplankton


2008 ◽  
Vol 51 (4) ◽  
pp. 471-477 ◽  
Author(s):  
Juliana Pereira Bravo ◽  
Joice Felipes ◽  
Daniela Bertolini Zanatta ◽  
José Luis da Conceição Silva ◽  
Maria Aparecida Fernandez

This study aimed at the sequence and analysis of the mtDNA control region (CR) of the Diatraea saccharalis. The genome PCR amplification was performed using the complementary primers to the flanking regions of Bombyx mori CR mitochondrial segment. The sequencing revealed that the amplified product was 568 bp long, which was smaller than that observed for B. mori (725 bp). Within the amplified segment, a sequence with 338 nucleotides was identified as the control region, which displayed a high AT content (93.5%). The D. saccharalis mtDNA CR multiple sequence alignment analysis showed that this region had high similarity with the Lepidoptera Cydia pomonella.


2020 ◽  
Vol 61 (1) ◽  
pp. 96-100
Author(s):  
G. T. Mensah ◽  
C. A. Narh ◽  
C. A. Brown ◽  
P. F. Ayeh-Kumi ◽  
I. O. Frempong

Giardia duodenalis is a common intestinal parasite in humans, a wide range of domesticated and wild animals. There are human and animal specific, as well as zoonotic pathogenic gen­otypes. It is not clear whether livestock in close proximity to humans could be infected with human specific genotypes, and vice versa. In this study, Giardia-positive faecal samples were collected from both humans (n = 4) (from Maamobi Polyclinic in the Ayawaso Sub- Metro) and calves (n = 8) (from Animal Research Institute Farms, Adentan Municipality), in Ghana. Nested PCR amplification using Giardia-specific, Glutamate dehydrogenase (GDH) genes and Tri­osephosphate isomerase (TPI) gene primers for human and animal faecal samples respectively was carried out. Results showed that 100% of the calves carried the TPI-B genotype, which is a common pathogenic genotype in humans. This report is based on the unusual results obtained as Giardia duodenalis genotype B is known to occur in humans but is being observed in calves for the first time. This suggests that calves in close proximity to humans could be reservoirs and sources of human Giardia infections.


Rodriguésia ◽  
2021 ◽  
Vol 72 ◽  
Author(s):  
João Paulo Silva Souza ◽  
Paulo Weslem Portal Gomes ◽  
Rita de Cássia Pereira dos Santos ◽  
Ana Cláudia Caldeira Tavares-Martins

Abstract The present study is aimed to evaluate the richness, composition and spatial distribution of bryophytes occurring in Mosqueiro Island, in the Amazon forest. Forty-one 100-m² plots in 37 flooded and 4 non-flooded environments were selected for data collection, all substrate found were considered. The results were compared with surveys in other islands from the state of Pará and were analyzed according to frequency of populations, colonized substrates, light tolerance guilds, and distribution in Brazilian biomes. Ninety-seven species were recorded, distributed in 36 genera and 17 families, being 57 (58.7%) liverwort and 40 (41.2%) moss species. The rare species stood out with 53 species (54.08%). High similarity was observed between corticolous and epixylic communities, and between the terricolous community and the bryophytes found growing on charcoal, which is an artificial substrate. In relation to light tolerance guilds, generalist species prevailed (52 species, 53.6%). As for phytogeographic distribution, there was a predominance of taxa with occurrence in the Amazon and Atlantic rainforest (35 species, 37.11%). Ceratolejeunea ceratantha is reported for the first time for the state of Pará. The level of anthropization in the island was showed mainly by high richness and occurrence of generalist species underscores and well-adapted species to stressed conditions, evidencing changes in the bryophyte community structure.


Author(s):  
O. Yu. Yurkevich ◽  
T. E. Samatadze ◽  
I. Yu. Selyutina ◽  
S. I. Romashkina ◽  
S. A. Zoshchuk ◽  
...  

For the first time, chromosomal polymorphism in karyotypes of three species from the section Hedysarum (= syn. Gamotion) of the genus Hedysarum L. (Fabaceae) grown in Southern Siberia has been studied with the useof molecular cytogenetic markers. This comparative molecular cytogenetic analysis revealed high similarity in morphology of chromosomes in H. alpinum L., H. austrosibiricum B. Fedtsch. and H. theinum Krasnob. as well as in patterns ofdistribution of 45S and 5S rDNA loci in their karyotypes confirming their close relationships. Considerable intra-specificpolymorphism on 45S rDNA chromosome localization was detected in H. theinum. In karyotype of H. alpinum, unlikethe other two species, two chromosome pairs bearing 5S rDNA locus were observed which could be used as additionalspecies-specific markers.


2021 ◽  
Vol 100 (7) ◽  
pp. 717-723
Author(s):  
Lyudmila P. Minaeva ◽  
Anna S. Polyanina ◽  
Mariya G. Kiseleva ◽  
Zakhar A. Chalyy ◽  
Natalia R. Efimochkina ◽  
...  

Introduction. Dried fruits are a valuable source of dietary fibre, many vitamins and minerals in the population’s diet. However, the high content of readily available carbohydrates makes this type of product vulnerable to mould contamination. The greatest danger among which are toxigenic species. But there is practically no scientific information about the contamination presented on the Russian market dried fruits with moulds producing mycotoxins. That does not allow judging about this aspect of food safety. Materials and methods. Contamination with moulds and bacteria of 57 samples of dried fruits of 7 species popular in Russia was studied using cultural methods of analysis. Monospore isolates of moulds were isolated from dried fruits; in vitro mycotoxins production studied; by UHPLC-MS / MS analyzed mycotoxins in the multidetection mode. Results and discussion. In general, the microbial contamination of dried fruits was low: 87.7% of the samples met the established microbiological standards, in most cases, moulds caused it. At the same time, the highest frequency and levels of contamination were found in dates. Aspergillus sp. dominated in the micoflora of all types of dried fruits. Among the isolated 33 strains of moulds, 45.5% turned out to be toxigenic and, in vitro, were capable of biosynthesis of significant amounts of several types of mycotoxins, including emergent mycotoxins. Fumonisin- and ochratoxin-producing activities have been found in Aspergillus strains of the Nigri section. In model experiments, the accumulation of mycotoxins in individual strains exceeded the level normalized in grain products, including (in μg/kg): for aflatoxins B1 - more than 32000 and B2 - 3230; fumonisin B2 - more than 3100; ochratoxin A up to 4.3; for emergent accumulation reached: sterigmatocystin up to 6218220 and citreoviridine - 153. Conclusion. Moulds are the main type of microflora that contaminates dried fruits. The ability of mould isolates from dried fruits to form mycotoxins has been established, among which highly toxigenic strains have been identified. This indicates the presence of a potential risk of contamination of this type of food with unregulated mycotoxins and a possible increase in their content in the diets of consumers. The results obtained substantiate the need for extensive monitoring of mycotoxin producers in dried fruits. This is important for predicting the risk of toxin formation and identifying the relationship of specific mycotoxins with certain types of dried fruits. The presence of toxigenic activity of moulds isolated from dried fruits has been shown in Russia for the first time.


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