scholarly journals First report and molecular characterization of the dagger nematode, Xiphinema oxycaudatum (Nematoda, Dorylaimidae) from South Africa

ZooKeys ◽  
2019 ◽  
Vol 894 ◽  
pp. 1-17
Author(s):  
Fisayo Y. Daramola ◽  
Rinus Knoetze ◽  
Antoinette Swart ◽  
Antoinette P. Malan

Plant-parasitic nematodes of the genus Xiphinema Cobb, 1913 comprise a complex group of nematode species, some of which are important vectors of plant viruses. During a field survey to determine the soil health of an abandoned honeybush (Cyclopia genistoides) monoculture, a high density of the dagger nematode, Xiphinema oxycaudatum Lamberti & Bleve-Zacheo, 1979 (Nematoda, Dorylaimidae), was observed in soil around the roots of honeybush plants in an abandoned farmland at Bereaville, an old mission station in the Western Cape province of South Africa. Soil samples were taken from the rhizosphere of plants and nematodes were extracted from the soil using a modified extraction tray method. Specimen of the dagger nematodes were processed for scanning electron microscopy, morphological and molecular analysis. Molecular profiling of the nematode species was done in order to give an accurate diagnosis and to effectively discriminate the nematode from other species within the Xiphinema americanum group. Phylogenetic analysis based on the D2D3 expansion segment of the 28S gene supported a close relationship of species within the americanum group, however, the protein-coding cytochrome oxidase (coxI) of the mitochondrial gene provided a useful tool for distinguishing the nematode from other species within the group. This study represents the first report of X. oxycaudatum from South Africa.

Plant Disease ◽  
2010 ◽  
Vol 94 (4) ◽  
pp. 478-478 ◽  
Author(s):  
L. Mostert ◽  
W. Bester ◽  
T. Jensen ◽  
S. Coertze ◽  
A. van Hoorn ◽  
...  

Southern highbush blueberry plants (Vaccinium corymbosum interspecific hybrids) showing rust-like symptoms were observed in July 2006 in Porterville in the Western Cape (WC), South Africa. Diseased plants were also found in Villiersdorp and George in the WC in 2007. In 2008, symptoms were observed in George, and in 2009, in all the previous reported areas. Cvs. Bluecrisp, Emerald, Jewel, Sharpblue, and Star were infected. Reddish-to-brown spots appeared on the adaxial surface of leaves and developed into yellow-to-orange erumpent uredinia with pulverulent urediniospores. Uredinia were hypophyllous, dome shaped, 113 to 750 μm wide, and occasionally coalescing. Urediniospores were broadly obovate, sometimes ellipsoidal or pyriform, with yellowish orange content, and measured 19 to 27 × 12 to 20 μm (average 24 × 15 μm, n = 30). Spore walls were echinulate, hyaline, 1 to 1.5 μm thick, and with obscure germ pores. No telia or teliospores were observed. Voucher specimens were lodged in the South African National Fungus Collection in Pretoria (PREM 60245). The isolate was initially identified as Thekopsora minima P. Syd. & Syd., based primarily on the absence of conspicuous ostiolar cells characteristic of Naohidemyces spp. (3). Genomic DNA was extracted from urediniospores. Approximately 1,400 bp were amplified spanning the 5.8S, ITS2, and 28S large subunit of the ribosomal DNA (1). The sequence (GU355675) shared 96% (907 of 942 bp; GenBank AF522180) and 94% (1,014 of 1,047 bp; GenBank DQ354563) similarities in the 28S portion, respectively, to those of Naohidemyces vaccinii (Wint.) Sato, Katsuya et Y. Hiratsuka and Pucciniastrum geoppertianum (Kuehn) Kleb, two of the three known rust species of blueberry (2). Although no sequences of T. minima were available for direct comparison, phylogenetic analyses of the 28S region strongly supported the South African blueberry rust as congeneric with T. guttata (J. Schröt.) P. Syd. & Syd. (GenBank AF426231) and T. symphyti (Bubák) Berndt (GenBank AF26230) (data not shown). Four 6-month-old cv. Sharpblue plants were inoculated with a suspension (approximate final concentration of 1 × 105 spores per ml) of fresh urediniospores in a water solution with 0.05% Tween 20. After incubation at 20°C for 48 h under continuous fluorescent lighting, the plants were grown in a glasshouse (18/25°C night/day temperatures). Identical uredinia and symptoms developed approximately 3 weeks after inoculation on the inoculated plants, but not on two control plants of cv. Sharpblue sprayed with distilled water and kept at the same conditions. The alternate host hemlock (Tsuga spp.) is not endemic to South Africa and not sold as an ornamental plant according to a large conifer nursery. Hosts of T. minima include Gaylussacia baccata, G. frondosa, Lyonia neziki, Menziesia pilosa, Rhododendron canadense, R. canescens, R. lutescens R. ponticum, R. prunifolium, R. viscosum, V. angustifolium var. laevifolium, V. corumbosum, and V. erythrocarpon (3). Visual inspection of possible hosts in the gardens in close proximity of Vaccinium production areas did not show any rust symptoms. To our knowledge, this is the first report of T. minima on blueberries outside of Asia and the United States (2). References: (1) M. C. Aime. Mycoscience 47:112, 2006. (2) D. F. Farr and A. Y. Rossman. Fungal Databases. Systematic Botany and Mycology Laboratory. Online publication. USDA-ARS, 2009. (3) S. Sato et al. Trans. Mycol. Soc. Jpn. 34:47, 1993.


Zootaxa ◽  
2017 ◽  
Vol 4329 (6) ◽  
pp. 574
Author(s):  
HYUNG JIK WOO ◽  
ANH D. NGUYEN ◽  
KUEM HEE JANG ◽  
EUN HWA CHOI ◽  
SHI HYUN RYU ◽  
...  

The millipede Anaulaciulus koreanus (Verhoeff, 1937), belonging to the family Julidae, is an endemic species of the Korean fauna. In this study, we sequence and annotate the mitochondrial genome of A. koreanus. The complete mitochondrial genome of this species is 14,916 bp in length and contains 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes (16S and 12S rRNA), and a large non-coding region. The genome has a very high A+T content (71.1%), less than of the species Brachycybe lecontii Wood, 1864 (order Platydesmida; 76.6%) and Sphaerotheriidae sp. (order Sphaerotheriida; 71.2%). In comparison with the mitochondrial gene arrangement of eight other millipede species, the whole mitochondrial gene arrangement of A. koreanus is most similar to the nemasomatid species, Antrokoreana gracilipes Verhoeff, 1938, but differs from those of the other diplopod orders. The absence of tRNACys between the ND2 and COI regions is unique to the order Polydesmida, whereas the translocation of tRNATyr to between ND2 and COI is exclusive to the Sphaerotheriida. It is also shown that the translocation of tRNAThr between ND4L and ND1 may be a synapomorphy to support a close relationship of two orders Spirobolida and Spirostreptida. 


Zootaxa ◽  
2017 ◽  
Vol 4312 (1) ◽  
pp. 194 ◽  
Author(s):  
ANNIKA PIETERSE ◽  
ANTOINETTE P. MALAN ◽  
LAURA M. KRUITBOS ◽  
WILLEM SIRGEL ◽  
JENNA L. ROSS

A survey of nematodes that use terrestrial slugs as definitive hosts, was conducted in canola fields and ornamental nurseries located in the Western Cape province of South Africa. A total of 3290 slugs were collected from 22 different sites. On the identification of the slugs, they were vivisected and examined for internal nematodes. After identifying the nematodes found, on the basis of their morphological characteristics, their identity was confirmed using molecular sequence data for the internal transcribed spacer (ITS-1, 5.8S, ITS-2), D2-D3 expansion segments of the large subunit (LSU or 28S) and small subunit (SSU or 18S) ribosomal DNA. Of the 22 sites investigated, 13 had nematodes present, with 8 % of the slugs being found to be infected with nematodes. Seven nematode species were confirmed, including Agfa flexilis, Angiostoma margaretae, Angiostoma sp. (SA1), Caenorhabditis elegans, mermithid sp. (SA1), Phasmarhabditis sp. (SA3) and Phasmarhabditis sp. (SA4). In addition, several Angiostoma spp. were also isolated, but could only be identified to genus level due to limited material. Of the seven confirmed species, four were previously undescribed. This is the first record of A. margaretae associating with Deroceras panormitanum, Deroceras reticulatum, Lehmannia valentiana and Oopelta polypunctata. Also, this is the first time that a mermithid has been found associating with molluscs in South Africa. 


2014 ◽  
Vol 89 (4) ◽  
pp. 415-427 ◽  
Author(s):  
H. Çimen ◽  
M.-M. Lee ◽  
J. Hatting ◽  
S. Hazir ◽  
S.P. Stock

AbstractMorphological and molecular sequence data were combined with cross-hybridization studies and used to identify a new Steinernema sp. from Free State, South Africa. Molecular and morphological data indicate that the new species belongs to the ‘glaseri-group’ of Steinernema spp. Key morphological diagnostic characters for S. innovationi n. sp. include the morphometric features of the third-stage infective juveniles: total body length = 1054 (1000–1103) μm, tail length = 108 (97–117) μm, location of the excretory pore = 88 (82–91) μm, and D% = 58 (54–63), E% = 115 (104–137) and H% = 43 (37–46). Additionally, the morphology of the spicules and gubernaculum of the first-generation males are considered key diagnostic traits. Steinernema innovationi n. sp. was also characterized by analysis of both rDNA and mitochondrial gene sequence data, which further indicate the uniqueness of this Steinernema species.


Plant Disease ◽  
2020 ◽  
Vol 104 (3) ◽  
pp. 992-992
Author(s):  
P. Moyo ◽  
L. Mostert ◽  
R. Dedekind ◽  
W. J. van Jaarsveld ◽  
R. Pierron ◽  
...  

2021 ◽  
pp. 215-223
Author(s):  
Sheila Storey ◽  
Hans Hugo

Abstract This chapter discusses the economic importance, distribution, host range, and recommended integrated management of plant parasitic nematodes in vineyards in South Africa. Future research requirements into the use of novel control measures which include biocontrol, novel biology and soil health are also mentioned.


Plant Disease ◽  
2006 ◽  
Vol 90 (12) ◽  
pp. 1550-1550
Author(s):  
A. McLeod ◽  
S. Coertze

Phytophthora infestans is known worldwide as the destructive, late blight pathogen of potatoes and tomatoes. However, erratic reports dating back to 1856 also have shown it to be pathogenic on petunia (Petunia × hybrida), although it has not been regarded as an important pathogen on this host (4). Recently, reports from North America showed that P. infestans is of commercial importance in greenhouse-grown petunias (2), and that late blight-infected petunias may serve as inoculum to tomatoes growing in the same greenhouse (1,2). In the Western Cape Province of South Africa, two petunia samples were received at the Stellenbosch University Plant Disease Clinic in 2005 that showed symptoms resembling P. infestans infections. The two samples were from nurseries where petunias were either grown under shading nets or in a greenhouse. In the greenhouse-grown petunias, the presumptive late blight infections resulted in substantial losses to the grower. Symptoms included gray, slightly sunken leaf lesions with white sporulation mainly on the adaxial side of the leaves. Leaflets of the petunias were incubated in moist chambers, and sporangia sporulating from lesions were identified morphologically as being P. infestans (3). Subsequently, one isolate was cultured onto synthetic media by carefully transferring sporangia from a lesion with the tip of a bended glass rod onto wheat medium (120 g/L of crushed wheat seeds, blended, boiled and filtered through cheesecloth, plus 15 g of sucrose and agar). The identity of the culture was further confirmed through sequence analyses of the internal transcribed spacer regions (GenBank Accession No. DQ479409). The isolated P. infestans strain (STE-U 6134) has been submitted to the Stellenbosch University culture collection. Inoculum for the pathogenicity tests was produced by first flooding 14-day-old cultures with sterile distilled water to obtain a 2 × 104/ml sporangial suspension, followed by zoospore induction at 4°C. A mixture of petunia cultivars (n = 24) were spray inoculated to runoff with the zoospore induced sporangial suspension. Control plants were sprayed with sterile distilled water. Inoculated plants were incubated at 22 to 25°C and high relative humidity (≥93%) within perspex humidity chambers (60 × 30 × 60 cm) lined with a wet sheet of chromatography paper. The experiment was repeated twice. The first late blight symptoms similar to those of the submitted samples appeared 5 to 7 days after inoculation, with some lesions containing profuse white mycelia and sporangiophores typical for P. infestans. The pathogen was reisolated from the leaf lesions, completing Koch's postulate. To our knowledge, this is the first report of P. infestans causing damage on petunias in South Africa. Future studies should be aimed at investigating whether late blight-infected petunias provide an important source of inoculum for potatoes and tomatoes, which are widely grown in the Western Cape Province of South Africa. References: (1) M. C. Becktell et al. Plant Dis. 89:1000, 2005. (2) K. L. Deahl and D. K. Farel. Plant Dis. 87:1004, 2003. (3) D. C. Erwin and O. K. Ribeiro, Phytophthora Diseases Worldwide. The American Phytopathological Society St. Paul, MN, 1996. (4) J. M. Hirst and W. C. Moore. Phytophthora infestans on petunia and datura. Page 76 in: Plant Pathology-A Record of Current Work on Plant Diseases and Pests. Vol. 6. Ministry of Agriculture, Fisheries and Food Plant Pathology Laboratory, Harpenden, England, 1957.


2021 ◽  
Vol 59 (3-4) ◽  
pp. 149-155
Author(s):  
Olga Kornilova ◽  
Klara Tsushko ◽  
Ludmila Chistyakova

This paper is a first report on species of endosymbiotic ciliates (Litostomatea, Trichostomatia) inhabiting the intestine of zebras in South Africa. Ciliates from Mountain Zebra were investigated for the first time in the world. The wild population of mountain zebras in general and the Cape Mountain Zebra subspecies in particular is low in numbers: this species is included as vulnerable in the IUCN Red List. Approximately 15 species of trichostome ciliates from 9 different genera were found in the samples collected from wild zebras in Western Cape, South Africa. Some of the ciliate species are also common to horses and other equids, while others are unique for zebras. The ciliates of Triplumaria genus common to elephants and rhinoceroses, and the species Blepharosphaera ceratotherii previously described in rhinoceroses were found in equids for the first time.


Nematology ◽  
2020 ◽  
Vol 22 (4) ◽  
pp. 453-468
Author(s):  
Marcilene F.A. Santos ◽  
Vanessa S. Mattos ◽  
Ana Cristina M.M. Gomes ◽  
Jessica M.S. Monteiro ◽  
Daniela A. Souza ◽  
...  

Summary Meloidogyne paranaensis is one of the most destructive root-knot nematode species affecting coffee cultivation. This species presents different esterase phenotypes (Est): P1, P2 and P2a, previous studies showing that Est P2 and P2a populations were more aggressive to susceptible coffee cultivars than populations with Est P1, and local producers have even asked if they may be described as other species. The objective of this study was to characterise M. paranaensis populations of different esterase phenotypes (Est P1, P2 and P2a), regarding morphological, morphometric and phylogenetic relationships in distinct regions of ribosomal DNA (rDNA), mitochondrial gene cytochrome c oxidase II (COII) and nuclear protein coding gene HSP90. All populations were identified by esterase phenotype and SCAR-specific markers. Regarding morphology/morphometrics, the three populations were very similar to the description of the species, differing only in the morphology of the male stylet and second-stage juvenile hyaline tail length. Based on the phylogenetic analysis, a low intraspecific variability was detected among M. paranaensis Est P1 and Est P2 populations from Brazil; the Guatemalan population Est P2a, however, showed a genetic differentiation from the Brazilian populations, confirming the geographic genetic distance of this aggressive population. According to this multi-source approach study, in spite of the intraspecific variation, the phylogenetic position of M. paranaensis is absolute, regardless of the enzymatic phenotype and SCAR markers.


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