Abstract. The intensity, duration, and geographic extent of floods in Bangladesh mostly depend on the combined influences of three river systems, Ganges, Brahmaputra and Meghna (GBM). In addition, climate change is likely to have significant effects on the hydrology and water resources of the GBM basins and might ultimately lead to more serious floods in Bangladesh. However, the assessment of climate change impacts on basin-scale hydrology by using well-constrained hydrologic modelling has rarely been conducted for GBM basins due to the lack of data for model calibration and validation. In this study, a macro-scale hydrologic model H08 has been applied regionally over the basin at a relatively fine grid resolution (10 km) by integrating the fine-resolution (~0.5 km) DEM data for accurate river networks delineation. The model has been calibrated via analyzing model parameter sensitivity and validated based on a long-term observed daily streamflow data. The impact of climate change on not only the runoff, but also the basin-scale hydrology including evapotranspiration, soil moisture and net radiation have been assessed in this study through three time-slice experiments; present-day (1979–2003), near-future (2015–2039) and far-future (2075–2099) periods. Results shows that, by the end of 21st century (a) the entire GBM basin is projected to be warmed by ~3°C (b) the changes of mean precipitation are projected to be +14.0, +10.4, and +15.2%, and the changes of mean runoff to be +14, +15, and +18% in the Brahmaputra, Ganges and Meghna basin respectively (c) evapotranspiration is predicted to increase significantly for the entire GBM basins (Brahmaputra: +14.4%, Ganges: +9.4%, Meghna: +8.8%) due to increased net radiation (Brahmaputra: +6%, Ganges: +5.9%, Meghna: +3.3%) as well as warmer air temperature. Changes of hydrologic variables will be larger in dry season (November–April) than that in wet season (May–October). Amongst three basins, Meghna shows the largest hydrological response which indicates higher possibility of flood occurrence in this basin. The uncertainty due to the specification of key model parameters in predicting hydrologic quantities, has also been analysed explicitly in this study and found that the uncertainty in estimation of runoff, evapotranspiration and net radiation is relatively less. However, the uncertainty in estimation of soil moisture is quite large (coefficient of variation ranges from 11 to 33% for three basins). It is significant in land use management, agriculture in particular and highlights the necessity of physical observation of soil moisture.