O-methylated N-glycans Distinguish Mosses from Vascular Plants

In the animal kingdom, a stunning variety of N-glycan structures have emerged with phylogenetic specificities of various kinds. In the plant kingdom, however, N-glycosylation appears to be strictly conservative and uniform. From mosses to all kinds of gymno- and angiosperms, land plants mainly express structures with the common pentasaccharide core substituted with xylose, core α1,3-fucose, maybe terminal GlcNAc residues and Lewis A determinants. In contrast, green algae biosynthesise unique and unusual N-glycan structures with uncommon monosaccharides, a plethora of different structures and various kinds of O-methylation. Mosses, a group of plants that are separated by at least 400 million years of evolution from vascular plants, have hitherto been seen as harbouring an N-glycosylation machinery identical to that of vascular plants. To challenge this view, we analysed the N-glycomes of several moss species using MALDI-TOF/TOF, PGC-MS/MS and GC-MS. While all species contained the plant-typical heptasaccharide with no, one or two terminal GlcNAc residues (MMXF, MGnXF and GnGnXF, respectively), many species exhibited MS signals with 14.02 Da increments as characteristic for O-methylation. Throughout all analysed moss N-glycans, the level of methylation differed strongly even within the same family. In some species, methylated glycans dominated, while others had no methylation at all. GC-MS revealed the main glycan from Funaria hygrometrica to contain 2,6-O-methylated terminal mannose. Some mosses additionally presented very large, likewise methylated complex-type N-glycans. This first finding of the methylation of N-glycans in land plants mirrors the presumable phylogenetic relation of mosses to green algae, where the O-methylation of mannose and many other monosaccharides is a common trait.

Dual role of Ovol2 on the germ cell lineage segregation during gastrulation in mouse embryogenesis

In mammals, primordial germ cells (PGCs), the origin of the germ line, are specified from the epiblast at the posterior region where gastrulation simultaneously occurs, yet the functional relationship between PGC specification and gastrulation remains unclear. Here, we show that Ovol2, a transcription factor conserved across the animal kingdom, balances these major developmental processes by repressing the epithelial-to-mesenchymal transition (EMT) driving gastrulation and the upregulation of genes associated with PGC specification. Ovol2a, a splice variant encoding a repressor domain, directly regulates EMT-related genes and consequently induces re-acquisition of potential pluripotency during PGC specification, whereas Ovol2b, another splice variant missing the repressor domain, directly upregulates genes associated with PGC specification. Taken together, these results elucidate the molecular mechanism underlying allocation of the germ line among epiblast cells differentiating into somatic cells through gastrulation.

Ultraviolet vision in larval Neogonodactylus oerstedii

Stomatopod crustaceans have among the most complex eyes in the animal kingdom, with up to twelve different color detection channels. The capabilities of these unique eyes include photoreception of ultraviolet (UV) wavelengths (<400 nm). UV vision has been well characterized in adult stomatopods but has not been previously demonstrated in the comparatively simpler larval eye. Larval stomatopod eyes are developmentally distinct from their adult counterpart and have been described as lacking the visual pigment diversity and morphological specializations found in adult eyes. However, recent studies have provided evidence that larval stomatopod eyes are more complex than previously thought and warrant closer investigation. Using electroretinogram recordings in live animals we found physiological evidence of blue and UV sensitive photoreceptors in larvae of the Caribbean stomatopod species Neogonodactylus oerstedii. Transcriptomes of individual larvae were used to identify the expression of three distinct UV opsins transcripts, which may indicate the presence of multiple UV spectral channels. This is the first paper to document UV vision in any larval stomatopod, expanding our understanding of the importance of UV sensitivity in plankton. Similar to adults, larval stomatopod eyes are more complex than expected and contain previously uncharacterized molecular diversity and physiological functions.

Ability to Swim (Not Morphology or Environment) Explains Interspecific Differences in Crinoid Arm Regrowth

Regrowth of body parts occurs in almost every phylum of the animal kingdom, but variation in this process across environmental, morphological, and behavioral gradients remains poorly understood. We examined regeneration patterns in feather stars – a group known for a wide range of morphologies and behaviors and up to a forty-fold difference in arm regeneration rates – and found that the variation in arm regeneration rates is best explained by swimming ability, not temperature, food supply, morphology (total number of arms and number of regenerating arms), or degree of injury. However, there were significant interactive effects of morphology on rates of regeneration of the main effect (swimming ability). Notably, swimmers grew up to three-fold faster than non-swimmers. The temperate feather star Florometra serratissima regenerated faster under warmer scenarios, but its rates fell within that of the tropical species suggesting temperature can account for intraspecific but not interspecific differences. We urge comparative molecular investigations of crinoid regeneration to identify the mechanisms responsible for the observed interspecific differences, and potentially address gaps in stem cell research.

The Amazon River plume, a barrier to animal dispersal in the Western Tropical Atlantic

The dispersal of marine organisms can be restricted by a set of isolation mechanisms including hard barriers or hydrological features. In the Western Atlantic Ocean, the Amazon River discharge has been shown to act as a biogeographical barrier responsible for the differences in reef fish communities between Caribbean Sea and Northeast Brazil continental shelves. Here, we compare the diversity of all Animalia phyla from biogeographic ecoregions along the Tropical Western Atlantic continental shelf to test the hypothesis that the Amazon River plume spatially structures species diversity. For that, we used beta diversity estimators and multivariate ecological analysis on a database of species occurrence of the whole animal kingdom including 175,477 occurrences of 8,375 species from six ecoregions along the Western Tropical Atlantic. Results of the whole animal kingdom and the richest phyla showed that the Caribbean Sea and Tropical Brazil ecoregions are isolated by the Amazon River Plume, broadening and confirming the hypothesis that it acts as a soft barrier to animal dispersal in the Western Tropical Atlantic. Species sharing is larger northwestwards, in direction of the Caribbean than the opposite direction. Beyond species isolation due to local characteristics such as low salinity and high turbidity, our results suggest the dominant northwestward currents probably play a major role in animal dispersion: it enhances the flux of larvae and other planktonic organisms with reduced mobility from Brazil to Caribbean and hinders their contrary movement. Thus, the Amazon area is a strong barrier for taxa with reduced dispersal capacity, while species of pelagic taxa with active swimming may transpose it more easily.

Convergent evolution of venom gland transcriptomes across Metazoa

Animals have repeatedly evolved specialized organs and anatomical structures to produce and deliver a mixture of potent bioactive molecules to subdue prey or predators—venom. This makes it one of the most widespread, convergent functions in the animal kingdom. Whether animals have adopted the same genetic toolkit to evolved venom systems is a fascinating question that still eludes us. Here, we performed a comparative analysis of venom gland transcriptomes from 20 venomous species spanning the main Metazoan lineages to test whether different animals have independently adopted similar molecular mechanisms to perform the same function. We found a strong convergence in gene expression profiles, with venom glands being more similar to each other than to any other tissue from the same species, and their differences closely mirroring the species phylogeny. Although venom glands secrete some of the fastest evolving molecules (toxins), their gene expression does not evolve faster than evolutionarily older tissues. We found 15 venom gland–specific gene modules enriched in endoplasmic reticulum stress and unfolded protein response pathways, indicating that animals have independently adopted stress response mechanisms to cope with mass production of toxins. This, in turn, activates regulatory networks for epithelial development, cell turnover, and maintenance, which seem composed of both convergent and lineage-specific factors, possibly reflecting the different developmental origins of venom glands. This study represents a first step toward an understanding of the molecular mechanisms underlying the repeated evolution of one of the most successful adaptive traits in the animal kingdom.

Паразиты рыб горных озер бассейна Верхней Колымы. 1. Озера большой и малый Дарпир.

The first data on the parasite fauna of fish from the mountain lakes Bolshoy and Maly Darpir at the southern spurs of the Chersky Ridge (Momsky District, Yakutia) are presented. 7 species of fish have been studied, in which 34 species of parasites have been found: 33 species of helminths and 1 species of parasitic copepods, belonging to 22 genera, 16 families, 12 orders, 7 classes of 4 types of the animal kingdom. Trematodes completely dominate by the number of species among helminths (16 species); cestodes are half as many (8 species); these are followed by nematodes and spiny-headed worms (5 and 4 species, respectively). The greatest variety of parasites was found in the East Siberian grayling (22 species) and the Arctic char (19 species). Next to the latter in terms of the number of parasite species, there went the Kolyma sculpin (13 species), round whitefish (10 species each), sucker (9 species), eelpout, and common minnow (7 species each). Only one parasite species, the Neoechinorhynchus salmonis Ching, 1984 spiny-headed worm, is common for all studied fish. The second species of spiny-headed worms, Pseudoechinorhynchus borealis (Linstow, 1901), not found only in the round whitefish, was first recorded in fish of the Okhotsk-Kolyma area and in the sucker as a new definitive host.

Dualism and Buddhism. Parallels and Points of Convergence with Neuroscience

The article is devoted to one of the most relevant problems of modern philosophy, the philosophy of consciousness in light of the latest discoveries of neurobiology. The most poorly studied aspects; the problem of free will, the problem of consciousness of the animal world and the problem of psychophysical parallelism are considered in this article. Some ethical and ideological issues related to the problems are also considered. The classic dispute about the nature of consciousness by E.V. Ilyenkov and D.I. Dubrovsky, which ended essentially in a stalemate precisely because of the ignorance of the importance of the above issues, is considered as an example of why these questions are relevant. The article also views the paradox of free will and responsibility for one's actions, which inevitably arises with a materialistic understanding of the nature of consciousness. The article briefly analyzes the key ideas for this topic by a number of prominent neuroscientists (Wilder Penfield, John Eccles, Oleg Kryshtal (Krishtal), Christoph Koch), devoted to the problem of the nature of consciousness in the time from the 1970s to the present, as well as the philosophical foundations of ideas about consciousness, formed in the European philosophy of modern times. The concept of dualism and its possible foundations, which are relevant at the present time, are examined separately, but the dualistic concept of consciousness proposed by Descartes is criticized as incompatible with the modern conclusions of neurobiology. Also, the evidence of world-renowned neuroscientists destroying the "human monopoly" on the possession of consciousness and indicating the presence of consciousness in the animal kingdom is presented. Ultimately, the philosophy of Buddhism is considered as one of the possible and most promising topics for studying in this direction. The strengths of the Buddhist concept of consciousness, which are hardly noticeable in this time, are summarized, thus giving an advantage over the ontological foundations of the concept of consciousness that prevailed in Europe in the modern era. In general, the convergence of traditional Buddhist views on the nature of consciousness with the latest achievements of neurobiology is noted.

The Potential of the Zoomorphic Metaphor with the Target Domain “the Future of Russia” (on the Material of the Chinese Language)

The article presents the analysis of the zoomorphic metaphor with the target domain “The Future of Russia” in the context of the US sanctions policy against Russia in the Chinese non-institutional political Internet discourse. The chronological scope of the study covers the period from 2014 till the present. The Chinese website 悟空回答 (Wukong Q & A) was chosen as the source of the material. The analysis of metaphors is carried out within the framework of the methodology of linguistic political prognostics, using the methods of metaphorical modeling, linguistic, cultural, cognitive and discourse analysis. As a result of the analyzed 313 metaphorical contexts, it was found that one of the most frequent metaphorical models with the target domain “The Future of Russia” is a zoomorphic metaphor. The most frequent frame in this metaphorical model is the “Animal kingdom” frame, which contains three slots: “mammals”, “birds” and “fish”. The study showed that while representing the future of Russia in the Chinese non-institutional political Internet discourse in the context of anti-Russian sanctions, negatively colored metaphors which appear in the slots “mammals”, “birds” and “fish” prevail, depicting a “dark” future of Russian-American relations. Positively colored metaphors in the slot “mammals” are especially active in modeling the future of Russian-Chinese relations. The analysis of the metaphorical model showed that the activation of metaphors depends on the axiological attitudes of Chinese speakers and on changing political events.

Molecular Phylogenetics and Mitochondrial Evolution

The myth of a “typical” mitochondrial genome (mtDNA) is a rock-hard belief in the field of genetics, at least for the animal kingdom [...]