Awer Honey-Hunting Culture With Greater Honeyguides in Coastal Kenya

The remarkable mutualism between humans and greater honeyguides (Indicator indicator) is known still to thrive in only a few places in Africa. Here, we report on the honey-hunting culture of the marginalised Awer people in Kenya, historically a hunter-gatherer culture who today practise a mixed economy including significant amounts of foraging for wild foods. As part of a larger effort to document cross-cultural honey-hunting traditions in Africa, we interviewed six Awer honey-hunters to document their cultural practices. The interviewees reported that they depend on wild honey as a source of income, and that they readily seek the cooperation of honeyguides. Honey-hunting skills and the calls/whistles used to communicate with honeyguides are learnt from their fathers and other elders in village. The best time to honey-hunt is in the months following the big rains (August–December), when interviewees go out honey-hunting once a week on average. Honeyguides are not actively rewarded with wax, as it is believed that once a bird is fed it will not cooperate again for some time, and therefore after the honey harvest is complete, all remaining wax comb is buried. Honey-hunting practices are declining in this region, which interviewees attributed to drought and a lack of interest by the youth. These findings expand our understanding of how human-honeyguide mutualism persists across a range of human cultural variation.

Farmers' Sources and Varieties of Cassava Planting Materials in Coastal Kenya

Cassava (Manihot esculenta Crantz) grows in diverse agro-ecological zones. In Kenya, it is widely cultivated in Western and Coastal regions. It is mainly grown for food and nutrition security and excess roots are sold to generate income for the farm households. Its productivity per unit of the land area is high compared to maize and wheat which are staple crops in the country. However, scarcity of cassava planting materials and pests and diseases limit production in these regions. This study aimed at revealing the sources and varieties of cassava planting materials used by farmers and other farmers' practices in coastal Kenya. Four focus group discussions (FGD) and a survey were conducted in 2018, using a semi-structured questionnaire targeting 250 farmers. The data collected on the sources of planting materials, preferred varieties and the practices employed by the farmers in cassava production, was analyzed using descriptive statistics. Majority of farmers (83%) interviewed indicated that they recycled planting materials from the previous crop while some 67% respondents obtained the planting material from their neighbors. Kenya Agricultural and Livestock Research Organization's (KALRO) and the local markets were reported as sources of planting materials by 11 and 5% farmer respondents, respectively. The only formal seed source reported was KALRO. The rest, own seed, neighbors, and the local markets, were informal seed sources. Piecemeal harvesting practiced by 98% of the farmers favored planting material recycling. Farmers dedicated a small proportion of their land (mean 0.2 ha) to cassava production as reported by 60 and 72.8% of farmers from Taita Taveta and Kilifi, respectively. Slightly above half (56%) of the farmers in Kilifi dedicated slightly more land to cassava, planting between 100 and 4,000 cuttings (2.5% of an acre up to a full acre) compared to 87% farmers from Taita Taveta who planted 100 cuttings or less (which is about 2.5% of an acre or less). A majority (81.1%) of farmers in Taita Taveta planted local cassava varieties compared to Kilifi's 57.8%. Slightly above half of the farmer respondents reported Kibandameno as the preferred variety followed by Tajirika as the second preferred variety as reported by 18% farmers. Kibandameno was preferred for its sweet taste by 75.6% farmers while Tajirika was preferred by 52.4% farmers because of the high yielding capacity. Nearly all farmer respondents, in Taita Taveta County obtained the planting material from informal seed sources, except a negligible number, who reported buying their planting material from KALRO, a formal seed source, far from their locality. Farmers sourcing cuttings from a formal seed source such as those from Kilifi County were more likely to use a tractor for land preparation compared to those who sourced planting materials informally who more likely had scarce knowledge on cassava production and the value of cassava. Therefore, interventions to establish a sustainable healthy cassava planting materials seed system are needed to address the systemic constraint and help develop a viable cassava value chain.

Trends and Intensity of Rhinovirus Invasions in Kilifi, Coastal Kenya Over a Twelve-Year Period, 2007-2018

Background Rhinoviruses (RVs) are ubiquitous pathogens and the principal etiological agents of common cold. Despite the high frequency of RV infections, data describing their long-term epidemiological patterns in a defined population remain limited. Methods Here, we analysed 1,070 VP4/VP2 genomic region sequences sampled at Kilifi County Hospital on the Kenya Coast. The samples were collected between 2007 and 2018 from hospitalised paediatric patients (< 60 months) with acute respiratory illness. Results Of 7,231 children enrolled, RV was detected in 1,497 (20.7%) and VP4/VP2 sequences were recovered from 1,070 samples (71.5%). A total of 144 different RV types were identified (67 Rhinovirus A, 18 Rhinovirus B and 59 Rhinovirus C) and at any month, several types co-circulated with alternating predominance. Within types multiple genetically divergent variants were observed. Ongoing RV infections through time appeared to be a combination of (i) persistent types (observed up to seven consecutive months), (ii) reintroduced genetically distinct variants and (iii) new invasions (average of eight new types, annually). Conclusion Sustained RV presence in the Kilifi community is mainly due to frequent invasion by new types and variants rather than continuous transmission of locally established types/variants.

Is Giriama Traditionalism a Religion? Negotiating Indigenous African Religiosity in ‘Interfaith’ Cooperation in Coastal Kenya

This article explores how Giriama elders represent their ‘traditional religion’ (dini ya jadi) through ‘interfaith’ cooperation with Christians and Muslims in the coastal Kenyan town of Malindi. Based on extensive ethnographic research, the article analyses how Giriama Traditionalism relates, in complex and ambivalent ways, to normative assumptions and ideals with regard to what religion entails, and in turn how Giriama elders seek recognition as representatives of a religion in this setting. Such claims are made in a context where Christians, Muslims, and state actors sometimes doubt whether Giriama Traditionalism is worthy of being called a ‘religion’ at all. The article demonstrates that although in the context of interfaith cooperation Christianity, Islam, and ‘Traditionalism’ are formally recognized as equal religions, this does not necessarily create a level playing field. Instead, it requires Giriama elders to appropriate terms, norms, and ideals that are not necessarily of their own making in order for Giriama Traditionalism to be recognized as a religion. Through this analysis, the article aims to contribute to theoretical debates about religious diversity in African contexts by demonstrating how negotiations about what properly counts as (good) religion in coastal Kenya are deeply informed by the copresence of Christianity, Islam, and indigenous African religiosity in one religious field.

Applying conjoint analysis to match farmer's preferences for cattle traits with those conferred by the improved trypanotolerant Orma Boran cattle in coastal Kenya

Bovine trypanosomiasis is a key constraint to increased livestock production across all production systems of Kwale County in coastal Kenya. Genetically controlled trypanotolerance of cattle is regarded as one of the promising methods available to mitigate the impact of this disease, and the improved trypanonotolerant Orma Boran is one of the breeds available in Kenya for this purpose. Conjoint analysis was thus used to match farmer’s preference for cattle traits against those conferred by this breed in three production systems of Kwale County. The study also estimated the transaction costs (TC) that would influence access to breeding services while availing the breed. The aim was to identify production systems where the breed matches well with farmer preferences, as an initial step towards its dissemination. In order of importance, farmers preferred cattle that were resistant to trypanosomiasis, had large body size, exhibited resistance to tick-borne diseases (TBD), and had high milk output. However, there were inter-production system differences in trait preferences, where resistance to TBD was least valued in the agro-pastoral system, with more emphasis put on the size of animal and trypanotolerance respectively. On the other hand, in medium potential and marginal pastoral systems, more emphasis was placed on TBD resistance, followed by trypanosomiasis resistance. The agro-pastoral production system was therefore delineated as a potential area for disseminating the breed. Regarding transaction costs, the price of service was the most important transaction costs element. Furthermore, whereas bull service was preferred over artificial insemination (AI) services in marginal pastoral and medium potential systems, AI was given preference in an agro-pastoral system. It was thus concluded that the Orma Boran dissemination would be successful among agro-pastoral households system, and should be delivered using subsidized AI services.

Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya

Genomic surveillance of SARS-CoV-2 is important for understanding both the evolution and the patterns of local and global transmission. Here, we generated 311 SARS-CoV-2 genomes from samples collected in coastal Kenya between 17th March and 31st July 2020. We estimated multiple independent SARS-CoV-2 introductions into the region were primarily of European origin, although introductions could have come through neighbouring countries. Lineage B.1 accounted for 74% of sequenced cases. Lineages A, B and B.4 were detected in screened individuals at the Kenya-Tanzania border or returning travellers. Though multiple lineages were introduced into coastal Kenya following the initial confirmed case, none showed extensive local expansion other than lineage B.1. International points of entry were important conduits of SARS-CoV-2 importations into coastal Kenya and early public health responses prevented established transmission of some lineages. Undetected introductions through points of entry including imports from elsewhere in the country gave rise to the local epidemic at the Kenyan coast.

Trends and Intensity of Human Rhinovirus Invasions in Kilifi, Coastal Kenya Over a Twelve-Year Period, 2007-2018

ABSTRACT Background: Human rhinovirus (HRV) is an ubiquitous pathogen and the principal etiologic agent of common cold. Despite the high frequency of HRV infections, data describing its long-term epidemiological patterns in a single population remain limited. Methods: We analysed 1,070 VP4/VP2 genomic region sequences obtained from samples collected between 2007-2018 from hospitalised paediatric patients (< 60 months) with acute respiratory disease in Kilifi County Hospital on the Kenya Coast. Results: Of 7,231 children enrolled, HRV was detected in 1,497 (20.7%) andVP4/VP2 sequences were recovered from 1,070 samples (71.5%). A total of 144 different HRV types were identified (67 HRV-A, 18 HRV-B and 59 HRV-C) and at any time-point, several types co-circulated with alternating predominance. Within types multiple genetically divergent variants were observed. Ongoing HRV infections appeared to be a combination of (i) persistent types (observed up to seven consecutive months), (ii) reintroduced genetically distinct variants and (iii) new invasions (average of 8 new types, annually). Conclusion: Sustained HRV presence in the Kilifi community is mainly due to frequent invasion by new types and variants rather than prolonged circulation of locally established strains.

Saline Irrigation Water Retards Growth of Amaranthus in Coastal Kenya

Salinity is a major biotic factor that negatively affects growth and yield of crops. Over 90% of the coastal region of Kenya is arid and semi-arid, most farmers in the region use borehole irrigation water which is saline. Amaranthus spp. is one of the main vegetables grown in coastal region. There is limited information regarding the effect of salinity on amaranthus production. The study sought to determine the effect of saline irrigation water on amaranthus growth in coastal Kenya. Two experiments were set up, one at Mivumoni Secondary School farm in Kwale County and another at Pwani University farm in Kilifi County from beginning of September 2019 to the end of January, 2020. The experiments were laid out in a randomized complete block design and replicated three times. The six treatments tested were: fresh water alone, 75% saline water alone, 100% saline water alone, fresh water + DAP, 75% saline water + DAP, 100% saline water + DAP. Crop growth data collected were: emergence rate, plant height, leaf number, leaf area, chlorophyll content, stem thickness, root density, root weight, root volume and total plant biomass. Data obtained were subjected to analysis of variance using SAS statistical package (SAS, Version 10) and treatment effects were tested for significance using F-test. Significant means at F-test was ranked using Tukey’s test at 5% level of significance. Amaranthus seeds sown in fresh water had higher emergence rate compared to seeds sown in saline water. Salinity regardless of concentration used and application of DAP, resulted in decrease in height, leaf number, leaf area, stem tickness, chlorophyll content, root length, root weight, root volume and total biomass. The study demonstrates that saline irrigation water in coastal Kenya has a negative effect on Amaranthus growth.

Genomic surveillance reveals the spread patterns of SARS-CoV-2 in coastal Kenya during the first two waves

The transmission networks of SARS-CoV-2 in sub-Saharan Africa remain poorly understood. We analyzed 684 genomes from samples collected across six counties in coastal Kenya during the first two waves (March 2020 - February 2021). Up to 32 Pango lineages were detected in the local sample with six accounting for 88.0% of the sequenced infections: B.1 (60.4%), B.1.1 (8.9%), B.1.549 (7.9%), B.1.530 (6.4%), N.8 (4.4%) and A (3.1%). In a contemporaneous global sample, 571 lineages were identified, 247 for Africa and 88 for East Africa. We detected 262 location transition events comprising: 64 viral imports into Coastal Kenya; 26 viral exports from coastal Kenya; and 172 inter-county import/export events. Most international viral imports (61%) and exports (88%) occurred through Mombasa, a key coastal touristic and commercial center; and many occurred prior to June 2020, when stringent local COVID-19 restriction measures were enforced. After this period, local transmission dominated, and distinct local phylogenies were seen. Our analysis supports moving control strategies from a focus on international travel to local transmission.