Weak Effect of Gypsy Retrotransposon Bursts on Sonneratia alba Salt Stress Gene Expression

Transposable elements (TEs) are an important source of genetic diversity and can be co-opted for the regulation of host genes. However, to what extent the pervasive TE colonization of plant genomes has contributed to stress adaptation remains controversial. Plants inhabiting harsh environments in nature provide a unique opportunity to answer this question. We compared TE compositions and their evolutionary dynamics in the genomes of two mangrove species: the pioneer Sonneratia alba and its less salt-tolerant relative S. caseolaris. Age distribution, strength of purifying selection and the removal rate of LTR (long terminal repeat) retrotransposons were estimated. Phylogenetic analysis of LTR retrotransposons and their distribution in the genome of S. alba were surveyed. Small RNA sequencing and whole-genome bisulfite sequencing was conducted using leaves of S. alba. Expression pattern of LTR retrotransposons and their nearby genes were examined using RNA-seq data of S. alba under different salt treatments. S. alba possesses more TEs than S. caseolaris. Particularly, many more young Gypsy LTR retrotransposons have accumulated in S. alba than in S. caseolaris despite an increase in purifying selection against TE insertions. The top two most abundant Gypsy families in S. alba preferentially insert in gene-poor regions. They are under relaxed epigenetic repression, probably due to the presence of CHROMO domains in their 3′-ends. Although a considerable number of TEs in S. alba showed differential expression under salt stress, only four copies were significantly correlated with their nearby genes in expression levels. One such TE-gene pair involves Abscisic acid 8'-hydroxylase 3 functioning in abscisic acid catabolism. This study sheds light on the evolutionary dynamics and potential function of TEs in an extremophile. Our results suggest that the conclusion on co-option of TEs should be cautious even though activation of TEs by stress might be prevalent.

Struktur Dan Komposisi Vegetasi Mangrove Di Kawasan Laguna Segara Anakan Cilacap

In coastal areas, mangrove communities have many functions economically, physically, and ecologically. One of the mangrove forest areas that is experiencing rapid decline in area is the Segara Anakan Lagoon, Cilacap. The purpose of this study was to determine the structure and composition of mangrove vegetation. Vegetation data was collected by purposive sampling method and each station was made 9 sampling plots. The results found that there are 12 species consisting of 4 major mangrove families, 1 minor mangrove family and 2 associated mangrove families. In general, the mangrove tree vegetation in the eastern part of Segara Anakan is dominated by Aegiceras corniculatum with an INP ranging from 38.99-67.23%, the middle part is dominated by Nypa fruticans with an INP ranging from 47.80-70.18% and the western part is dominated by Sonneratia alba with an INP of 56.32%. Environmental quality measures include water temperature, salinity, dissolved oxygen, soil pH, water pH, TSS, total soil N, organic C, soil phosphate still support mangrove life.

Biochemical response of Sonneratia alba Sm. branches infested by a wood boring moth (Gazi Bay, Kenya)

Infestation by a moth woodborer species is causing mortality of Sonneratia alba Sm. mangrove by tunneling through the inner bark, cambium and conductive tissue. Infestation leads to death of some infested branches, whereas in other cases infested branches have been observed to recover from infestation. We have used Fourier transform infrared spectroscopy (FTIR) to investigate the differences in macromolecule (polysaccharide and lignin) content present in branches that died (D) of the infestation, those that recovered (R) from the infestation and control branches (C) that were not subject to any infestation. Wood samples were taken from four sampling plots (A, B, C and D) in Gazi Bay (Kenya). From each of the four plots, 15 S. alba branches were taken from five trees, from which 1 cm thick discs were cut from each of these branches to be used as samples. To identify the most characteristic FTIR bands for the three groups of samples, Principal Component Analysis (PCA) was applied on the transposed data matrix. Furthermore, canonical discriminant analysis was applied on the data considering the main FTIR band that would be identified through the PCA factors. Finally, One-way ANOVA and post hoc test were used to verify the significance of the observed trends. Branches that recovered from infestation had higher relative abundance of lignified cells. We conclude that insect-infested S. alba undergo changes related to the lignocellulosic contents. The infestation induces a decrease of the proportion of the polysaccharide content and an increase of the proportion of the lignin contents.

Local scale climate change mitigation through mangrove revegetation on the south coast of Lombok island

The mangrove vegetation in the coastal environment has a vital role, especially as a regulation for CO2 and O2 gas exchange. Mangrove revegetation has significant relevance for local-scale climate change mitigation. This study aims to assess and describe the success of mangrove revegetation in mitigating climate change at a local scale. Ecological data research methods are through surveys, observations and transect methods. Furthermore, the collection of social data through surveys, interviews, questionnaires, and Focus Group Discussions (FGD). Meanwhile, the research data were analyzed using descriptive statistical analysis, and analysis of the mangrove vegetation structure through frequency, density, cover, and essential value index analyses. The study results found seven types of mangroves, namely Sonneratia alba, Rhizophora stylosa, Rhizophora apiculata, Avicennia marina, Bruguira gymnoryzha, Lumnitzara racemosa, and Ceriops tagal. Sonneratia alba and Rizoporastylosaare species with the highest importance value of 194.04 where S. alba found Poton Bako and R. Stylosa found in Tanjung Luar. As for social data and knowledge, people in areas with a distance of 0-50 meters from mangrove forest have a better understanding than people living in areas with an average percentage value perspective of 52 %. Then, most respondents agreed that mangroves could prevent abrasion and reduce heat temperatures, with the percentage of respondents responding more than 41 % and 61 %, respectively in all locations. Based on the essential value index and respondents’ perceptions, it can be concluded that the Sonneratia alba and Rizopora Stylosa are species that have the highest ecological function because they have good adaptability in the coastal areas of South Lombok making them suitable as species for revegetation programs in South Lombok, and for the next revegetation program should be involving people who are close to mangrove forests because they are the ones who know and feel the benefits of mangrove forests.

Nutritional Value Content in Mangrove Syrup From Sonneratia alba Fruit

Pedada fruit (Sonneratia alba) is a fruit of mangrove plants whose utilization can be improved through simple technology, namely the processing of Sonneratia alba fruit into syrup. Mangrove plants produce fruit that can be utilized as a processed beverage, one of which is Sonneratia alba fruit that has a sour taste and can be processed into fresh drinks in the form of mangrove syrup. The purpose of the study was to find out the nutritional value content of mangrove syrup from Sonneratia alba fruit. Research methods are experiments. We use proximal analysis, which includes tests on protein, fat, carbohydrate, and vitamin C. Proximal analysis is carried out at the organic chemistry laboratory, Faculty of MIPA Universitas Jenderal Soedirman. The results of our research show Processed mangrove syrup from Sonneratia alba fruit has nutritional content: protein 1.20%, fat 0.20%, carbohydrates 3.50%, and vitamin C 55.30%. Mangrove fruit from Sonneratia alba processed into syrup has a high nutritional and antioxidant value and is rich in fiber, which is good for health

Analisis Kesesuaian Ekowisata Mangrove Di Desa Taddan Kecamatan Camplong Kabupaten Sampang

Kawasan hutan mangrove memiliki keanekaragaman hayati dan biota yang beragam, kawasan ini potensial dikembangkan sebagai kawasan ekowisata bahari. Tujuan penelitian ini untuk mengetahui indeks kesesuaian wisata, daya dukung kawasan, dan daya dukung pemanfaatan ekowisata mangrove di Desa Taddan Kecamatan Camplong Kabupaten Sampang. Metode pengambilan data mangrove menggunakan transek garis dan plot (Line Transect Plot). Hasil penelitian mendapatkan jenis mangrove di lokasi penelitian adalah Rhizophora stylosa, Rhizophora mucronata, Rhizophora apiculata, Sonneratia alba, Avicennia marina, dan Aegiceras cornitulatum. Kesesuaian kawasan untuk dimanfaatkan sebagai kawasan ekowisata bahari kategori mangrove untuk semua stasiun pada kondisi sesuai bersyarat. Daya dukung kawasan menunjukkan hasil kemampuan suatu kawasan dalam menyediakan ruang bagi pemanfaatan sebanyak 199 orang per hari, sedangkan untuk per trip sebanyak 25 orang per trip. Daya dukung pemanfaatan dengan mempertimbangkan persentase kawasan untuk konservasi sebesar 10% maka diperoleh hasil sebanyak 20 orang per hari

Crustacean and mollusk species diversity and abundance in the mangrove communities of Mimika District, Papua, Indonesia

Setyadi G, Rahayu DL, Pribadi R, Hartati R, Wijayanti DP, Sugianto DN, Darmawan A. 2021. Crustacean and mollusk species diversity and abundance in the mangrove communities of Mimika District, Papua, Indonesia. Biodiversitas 22: 4146-4157. A mangrove crustacean and mollusk species diversity study was carried out in four mangrove estuaries in Mimika District, Papua, Indonesia. Two locations were selected on each estuary; for each location, samples of crustaceans and mollusks were collected from 5 m × 5 m plots, and mangrove trees were recorded on 10 m × 10 m plots at a distance of 10 m, 250 m and 500 m perpendicular to the riverbank. This study recorded a total of 41 species of crustaceans and 32 species of mollusks the latter comprising three species of bivalves and 29 gastropod species. The number of crab species found was among the highest compared to similar studies in the world. The average number of species collected from each 25 m2 plot was 7.6 ± 4.2 species for crustaceans, with an average abundance of 87 ± 3.5 individuals; for mollusks, it was 3.3 ± 3 species with an average abundance of 28 ± 48.4. Crustacean abundance and species composition were influenced by inundation frequency. There was a strong correlation between the crab Parasesarma cricotum and the association of Rhizophora apiculata and Bruguiera gymnorrhiza mangroves, and Clistocoeloma amamaparense and the association of B. gymnorrhiza, R. apiculata, and Bruguiera parviflora mangroves. For mollusks, correlations were found between Terebralia palustris and Ellobium aurisjudae and the association of R. apiculata and B. parviflora mangroves. The highest crustacean Shannon-Wiener diversity index was associated with Sonneratia alba and Avicennia marina mangroves, and the highest mollusk Shannon-Wiener diversity index was associated with R. apiculata and B. gymnorrhiza mangroves.

Studies on Canopy Parameters of Some Mangroves Along the Coast of Maharashtra

Mangrove species, viz., Avicennia officinalis, Avicennia marina var. acutissima, Avicennia marina (dwarf), Rhizophora mucronata, Sonneratia alba, Aegiceras corniculatum, Kandelia candel were chosen for measurement of height of the tree and girth or circumference. The sampling was random and at least 50 records were made. The girth is measured by the tape. The measurement of the height is made with the help of abny level. The Tables 1 to 8 records the values for girth, height and canopy cover as well as for correlation coefficient (r). There correlation between girth and canopy in all the species studied however in case of Avicennia officinalis and Aegiceras corniculatum girth and height show more co-relation than girth and C. cover. The positive co-relation observed between girth and canopy is more or less 0.7 except Avicennia marina (dwarf) Excoecaria agallocha and Aegiceras corniculatum. The co-relation is observed in girth and height is difficult to explain. This case is observed in Avicennia officinalis and Aegiceras corniculatum.