Desulfovibrio desulfuricans AY5 Isolated from a Patient with Autism Spectrum Disorder Binds Iron in Low-Soluble Greigite and Pyrite

The sulphate-reducing bacteria (SRB) of genus Desulfovibrio are a group of prokaryotes associated with autism spectrum disorders (ASD). The connection between the elevated numbers of Desulfovibrio in the gut of children with ASD compared with healthy children remains unresolved. A conceivable consequence of SRB overgrowth in the gut is the conversion of bioavailable iron into low-soluble crystalline iron sulphides, causing iron deficiency in the organism. In this study, we report the draft genome sequence and physiological features of the first cultivable isolate from a patient with ASD, Desulfovibrio desulfuricans strain AY5.The capability of the strain to produce crystalline iron sulphides was studied under different pH conditions. The most notable greigite(Fe3S4) and pyrite (FeS2) formation was revealed at pH 6.0, which suggests that the iron loss due to insoluble sulphide formation may occur in the proximal part of the gastrointestinal tract. Strain AY5 was adapted to grow under nitrogen-limiting conditions by N2 fixation. The urease found in the strain’s genome may play a role in resistance to acidic pH.

Simulation of Slag–Matte/Metal Equilibria for Complex and Low-Grade Raw Materials

The depleting and increasingly complex mineral resources bring challenges into the area of metal production, bringing new boundary conditions to the smelting and refining processes. Thermodynamics of phases and equilibria are the key to the analysis of pyrometallurgical processes, enabling descriptions of their limiting boundary conditions. The raw material basis of non-ferrous metals needs an effective control of iron oxide fluxing due to the challenging fact that the targeted metal values of, e.g., copper, nickel, lead, and tin will exist as minority components in the smelter feeds compared to iron sulphides, gangue, and many harmful elements. This means more complex slag compositions and the amount of produced slag being several times that of the metal production. This feature severely impacts the heat balance of the smelting vessels where autogenous operation without external fuels becomes more and more difficult to maintain.

Metals recovery from acid mine drainage

The objectives of the present work give the results view of some physicochemical, chemical and biological-chemical methods for the heavy metals removal from Acid Mine Drainage (AMD). The background of the studied physicochemical methods was the adsorption by turf, chemical methods the heavy metals precipitation by the neutralization with NaOH. The principles of the biological-chemical methods were the bioprecipitation by the applications of sulphate-reducing bacteria (SRB), the sorption by the bacterially produced iron sulphides and sorption by brown coal bio-modified by micromycetes.

Chemical composition of iron sulphides contained in dust from pyrometallurgical Zn and Pb production

The paper presents results of investigations of the chemical composition of iron sulphides contained in dust from the pyrometallurgical production process of zinc and lead. The main mineral components of these dusts are sphalerite, galena, iron sulphide – pyrite, zincite, anglesite and probably kirchsteinite. The tests performed have demonstrated that the chemical composition of iron sulphide grains was not close to stoichiometric, the grains were non-uniform in terms of phase composition, and they always included admixtures in the form of inclusions of other sulphides, i.e. zinc sulphide and lead sulphide, and accompanying elements (Ca, Mn, Se, As, Ag, Cu, Cd).

Integrated Pliocene-Pleistocene magnetostratigraphy and tephrostratigraphy of deep-sea sediments at IODP Site U1424 (Yamato Basin, Japan Sea)

Sediments from the semi-enclosed Japan Sea are sensitive to paleoclimatic perturbations and they offer great opportunities for many regional and global paleoceanographic and paleoclimatic studies. These studies often require a robust chronology. However, due to rare preservation of calcareous microfossils and drastic changes in surface water salinity during glacial lowstands, the construction of a traditional oxygen isotope stratigraphy for Japan Sea sediments is often difficult. Here, we use sediments recovered at Integrated Ocean Drilling Program (IODP) Expedition 346 Site U1424 to build an integrated Pliocene-Pleistocene reference magnetostratigraphy and tephrostratigraphy for sedimentary sequences from the region. Rock magnetic experiments indicate that magnetic remanence of Site U1424 sediments are carried primarily by (titano)magnetite with small contributions from high coercivity minerals (e.g., hematite) and possibly iron sulphides (pyrrhotite and/or greigite). Dark-colored sediments appear to contain less (titano)magnetite probably due to reductive diagenesis under euxinic conditions. Natural remanent magnetization (NRM) of u-channel samples covering a continuous ~ 167.6 m sediment sequence at Site U1424 was repeatedly measured at 1 cm intervals before and after stepwise demagnetization. Despite lower NRM intensity in dark-colored sediments, NRM directional data from both dark- and light-colored sediments are considered suitable for the construction of magnetostratigraphy. Site U1424 sediments clearly recorded the majority of the polarity chrons and subchrons within the last ~ 4.89 Myr, with the Cobb Mountain subchron, the end of Kaena subchron, and the onset of Nunivak subchron less well preserved. Sixteen tephra layers from the site were sampled for chemical composition analyses and the results were correlated to reference tephrostratigraphy of the region. Ages of the identified tephras are consistent with and can be well integrated with the magnetostratigraphy. The resulting age model suggests that sedimentation rates at Site U1424 range between ~ 1.7 and 7.6 cm/kyr with an average of ~ 3.3 cm/kyr. The acquired magnetostratigraphy and tephrostratigraphy at Site U1424 provide a reference chronology that can be correlated with and transferred to other sediment sequences in the region to study paleoceanographic and paleoclimatic changes of the region as well as their links to other regional and global changes. Graphical abstract

The Secret ‘After Life’ of Foraminifera: Big Things Out of Small

Calcareous and siliceous microorganisms are common components of mudrocks, and can be important in terms of stratigraphy and environmental interpretation. In addition, such microorganisms can have a significant ‘after life’, through post-mortem alteration, and represent a potential source of additional information about the diagenetic and deformation history of the rock unit. Some examples of the latter are illustrated in this study from foraminifera within a Cretaceous black shale of Colombia. This includes foraminifera tests acting as understudied repositories of authigenic calcite cement, and of elements such as Ba, Zn, Fe and S through the formation of baryte, sphalerite and iron sulphides (pyrite, marcasite). Such repositories, within the body chambers of foraminiferal tests, can provide important windows into the diagenetic processes within mudstones. If calcite cement is not recognised or separated from biogenic calcite, the depositional calcite budget can be easily overestimated, skewing the application of mudrock classification schemes, and affecting environmental interpretation including that of productivity. The elements Ba, Zn and Fe (often in ratio with Al) are commonly utilised as geochemical proxies of environmental parameters (productivity, bottom water redox conditions, etc.). Therefore, the presence of significant amounts of baryte, sphalerite and pyrite-marcasite (within foraminifera) should be noted and their origins (source and timing) investigated based on their spatial relationships before making environmental deductions based on geochemical analysis alone. Additionally, commonly observed marginal shell damage of many of the observed foraminifera is reported. We interpret this damage, for the first time, as an indicator of lateral dissolution, brought about by horizontal foreshortening during orogenesis. This is also supported by the occurrence of microscale anastomosing horizontal to inclined baryte-filled fractures within the mudstone matrix.