Microbial Mediation of Carbon, Nitrogen and Sulfur Cycles During Solid Waste Decomposition

Landfills is a unique “terrestrial ecosystem” and serves as a significant carbon sink. Microorganism convert biodegradable substances in municipal solid waste (MSW) to CH4, CO2 and microbial biomass, consisting of the carbon cycling in landfills. Meanwhile, microbial mediated N and S cycles affect carbon cycling. How microbial community structure and function respond to C, N, and S cycling during solid waste decomposition, however are not well characterized. Here we show the response of bacterial and archaeal community structure and functions to C, N, and S cycling during solid waste decomposition in a long-term (265 days) operation laboratory-scale bioreactor through 16S rRNA based pyrosequencing and metagenomics analysis. Bacterial and archaeal community composition varied during solid waste decomposition. Aerobic respiration was the main pathway for CO2 emission, while anaerobic C fixation was the main pathway in carbon fixation. Methanogenesis and denitrification increased during solid waste decomposition, suggesting increasing CH4 and N2O emission. In contract, fermentation decreased along solid waste decomposition. Interestingly, Clostridiales were abundant and showed potential for several pathways in C, N, and S cycling. Archaea were involved in many pathways of C and N cycles. There is a shift between bacteria and archaea involvement in N2 fixation along solid waste decomposition that bacteria Clostridiales and Bacteroidales were initial dominant and then Methanosarcinales increased and became dominant in methanogenic phase. These results provide extensive microbial mediation of C, N, and S cycling profiles during solid waste decomposition.

HIGH RESOLUTION MINERALOGICAL CHARACTERIZATION OF SEDIMENTS - LAKE BOLĂTĂU-FEREDEU (ROMANIA)

The catchment (bedrock and soil) and sediments of lake Bolătău, Romania were studied by high resolution multi-methodological investigations to characterize paleoenvironmental and formation conditions. Particle size analyses, optical and cathodoluminescence microscopy, FTIR-ATR and Raman spectroscopy, X-ray powder diffraction, and XRF were applied for microtextural, chemical, micro-mineralogical and embedded organic material characterization and distribution of the sediments, especially concerning geochemical conditions, like pH and redox potential change. Our results support physical and chemical weathering in the process of soil formation with appearance of the new minerals appear (10Å sized phyllosilicates and clay minerals). Comparison of these studies offer possible differentiation of syn- and diagenetic mineralization, the clarification of debris contribution, microbial mediation and complex mineralization via decomposition of cell and extracellular polymeric substance. Based on the analyses on the abrasives, a suboxic environment prevailed in the depositional area and considerable microbial contribution is proposed via accumulation of lake sediments.

Dolomitization of the Ordovician subsalt Majiagou Formation in the central Ordos Basin, China: fluid origins and dolomites evolution

The Middle Ordovician subsalt Majiagou Formation in the Ordos Basin comprises pervasively dolomitized shallow marine limestone and is a major reservoir rich in natural gas resources. Four types of dolomite matrix and cement were identified based on petrographic textures: (very) finely crystalline, non-planar to planar-s matrix dolomite (Md1); finely to medium crystalline, planar-s to planar-e matrix dolomite (Md2); microbialites comprising dolomite microcrystals (Md3); and finely to coarsely crystalline dolomite cement (Cd). The Md1 and Md2 dolomites were controlled by alternating lagoon-shoal facies and have δ13C values (− 1.89 to + 1.45‰ VPDB for Md1, − 1.35 to + 0.42‰ VPDB for Md2) that fall within or are slightly higher than the coeval seawater, suggesting the dolomitizing fluid of evaporated seawater. Md2 dolomite was then subjected to penecontemporaneous karstification by meteoric water and burial recrystallization by sealed brines during diagenesis, as indicated by its relatively lower δ18O values (− 8.89 to − 5.73‰ VPDB) and higher 87Sr/86Sr ratios (0.708920–0.710199). Md3 dolomite comprises thrombolite and stromatolite and is interpreted to form by a combination of initial microbial mediation and later replacive dolomitization related to evaporated seawater. Cd dolomite was associated with early-formed karst system in the Md2 host dolomite. The lowest δ18O values (− 11.78 to − 10.18‰ VPDB) and 87Sr/86Sr ratios (0.708688–0.708725) and fluid inclusion data (Th: 123–175 °C) indicate involvement of hydrothermal fluid from which the Cd dolomite precipitated during deep burial. These results reveal the multi-stage dolomitization history of the Majiagou Formation and provide new constraints on fluid origins and dolomites evolution during deep burial in old superimposed basins, such as the Ordos Basin and elsewhere.

A Complex Assemblage of Crystal Habits of Pyrite in the Volcanic Hot Springs from Kamchatka, Russia: Implications for the Mineral Signature of Life on Mars

In this study, the crystal habits of pyrite in the volcanic hot springs from Kamchatka, Russia were surveyed using scanning electron microscopy. Pyrite crystals occur either as single euhedral crystals or aggregates with a wide range of crystal sizes and morphological features. Single euhedral crystals, with their sizes ranging from ~200 nm to ~40 µm, exhibit combinations of cubic {100}, octahedral {111}, and pyritohedral {210} and {310} forms. Heterogeneous geochemical microenvironments and the bacterial activities in the long-lived hot springs have mediated the development and good preservation of the complex pyrite crystal habits: irregular, spherulitic, cubic, or octahedral crystals congregating with clay minerals, and nanocrystals attaching to the surface of larger pyrite crystals and other minerals. Spherulitic pyrite crystals are commonly covered by organic matter-rich thin films. The coexistence of various sizes and morphological features of those pyrite crystals indicates the results of secular interactions between the continuous supply of energy and nutritional elements by the hot springs and the microbial communities. We suggest that, instead of a single mineral with unique crystal habits, the continuous deposition of the same mineral with a complex set of crystal habits results from the ever-changing physicochemical conditions with contributions from microbial mediation.

Iron Oxides: An Example of Structural Versatility

Iron is Earth’s fourth most widespread element (6.2% in mass), behind oxygen, silicon, and aluminum. It exists mostly as ferric oxide and oxyhydroxide (Fig. 7.1a) and to a lesser extent as sulfide (pyrite), carbonate (siderite), and silicate (fayalite). Iron oxides are largely used in technological areas such as metallurgy, colored pigments, magnetic materials, and catalysts. They also play an important role in the environment because the dissolution of ferric oxides in natural waters, promoted by acid–base, redox, photochemical phenomena, and also microbial mediation, allows iron to be involved in many biogeochemical processes. Iron is present in many living organisms such as plants, bacteria, mollusks, animals, and humans in various forms: . . . Porphyrinic complexes of iron, which are active centers of hemoglobin and several ferredoxins involved in biological functions, especially respiration mechanism and photosynthesis. Nanoparticles of amorphous ferric oxyhydroxides in animal and human organisms as ferritin, which allows regulation and storage of iron and in various nanophases present in plants as phytoferritin. Crystalline iron oxy(hydroxi)des produced by biomineralization processes. Goethite, lepidocrocite, and magnetite are the main constituents of radulas and the teeth of mollusks (limpets, chitons). Magnetite nanoparticles produced by magnetotactic bacteria (Fig. 7.1b), as well as by bees and pigeons, are used for purposes of orientation and guiding along the lines of force of the Earth’s magnetic field. Green rusts are also ferric- ferrous compounds belonging to the biogeochemical cycle of iron. . . . The crystal chemistry of iron oxy(hydroxi)des is very rich. The ferric, ferrous, and mixed ferric- ferrous oxygenated compounds correspond to around a dozen crystal structural types (Fig. 7.2). Most of these crystal phases can be synthesized from solutions in the laboratory, giving rise to a most diversified chemistry. They are also formed in nature because of the large variability of physicochemical conditions: an acidity range from around pH 0 to 13; redox conditions from oxic to totally anoxic media; bacterial activity that can be extremely intense; salinity largely varying from almost pure waters to real brines; presence of many organic and inorganic ligands; and various photochemical processes.

Mineralized biosignatures in ALH-77005 Shergottite - Clues to Martian Life?

The ALH-77005 Martian meteorite was found in Allan Hills on Antarctica during the Japanese National Institute of Polar Research (1977-1978) mission. One thin section sample was studied by optical microscopy for microtexture and by FTIR-ATR microscopy for interpretation of biogenic minerals and embedded organic materials. The geochemical data (biogenic elements, δ13C) of ALH-77005 meteorite from literature implementing recent results were compared to terrestrial geological samples. The ALH-77005 has poikilitic textures with coarse pyroxenes and brown olivines, and with recrystallized melt pocket. The coarse-grained minerals do not contain any alteration along the grain boundaries. Melt pocket and vicinity of opaque minerals contain biogenic signatures as filamentous, coccoidal forms of iron-oxidizing bacteria. The biosignatures were determined by 1) coccoidal, filamentous forms, 2) presence of embedded organic material, 3) presence of biogenic minerals, like ferrihydrite, goethite, and hematite. The other signatures for biogenicity of this meteorite are strong negative δ13C, enrichment of Fe, Mn, P, Zn in shock melt support scenario. This study proposes presence of microbial mediation on Mars.

Microbial mediation of textures and minerals – terrestrial or parent body processes?

Evolution of chondritic parent body is influenced by thermal, impact metamorphism and aqueous alteration, studied in Mező-Madaras, Knyahinya, Mócs and Nyírábrány in aspect of high resolution in situ textural, mineralogical and organic geochemical characteristics, using optical microscopy, FTIR-ATR and Raman spectroscopy. Our observations focused on Fe-containing opaque grains, glass, olivines and pyroxenes, which were well populated by micrometer-sized microbial filamentous elements in their boundary region within matrix and inside the minerals resembling mineralized microbially produced textures (MMPT), affecting 70-80 vol% of samples. In MMPT iron oxides (ferrihydrite, goethite), olivine, montmorillonite, kandite minerals and various hydrocarbon compounds were identified. (1) Data confirmed dense and invasive terrestrial microbially mediated contamination in the chondrites, supported by microtexture, micromineralogy and embedded organic compounds. As the classical transformation processes are supposed nowadays to have been happened on the parent bodies, a contradiction arose: how could it be that these classical products are manifested in microbially mediated texture? (2) Based on terrestrial analogies, microbial mediation is a sudden process comparing to geological times, very ancient, widespread and occur in various environments under determined conditions. It can consume previous and also produce new minerals. After formation, MMPT can survive billions of years proposing occurrence on parent bodies.