The Hypolipidemic Effect of Dalbergia odorifera T. C. Chen Leaf Extract on Hyperlipidemic Rats and Its Mechanism Investigation Based on Network Pharmacology

Objective. The aim of this study was to explore the hypolipidemic effect and mechanism of Dalbergia odorifera T. C. Chen leaf extract. Methods. The hypolipidemic effect of D. odorifera leaf extract was investigated using a hyperlipidemic rat model. Then, its mechanism was predicted using network pharmacology methods and verified using western blotting. Results. Compared with the levels in the model group, the serum levels of triglyceride (TG), total cholesterol (TC), and low-density lipoprotein cholesterol (LDL-C) decreased significantly, whereas the serum level of high-density lipoprotein cholesterol (HDL-C) increased dramatically after treatment with the extract. The degrees of hepatocyte steatosis and inflammatory infiltration were markedly attenuated in vivo. Then, its hyperlipidemic mechanism was predicted using network pharmacology-based analysis. Thirty-five key targets, including sterol regulatory element-binding protein cleavage-activating protein (SCAP), sterol regulatory element-binding protein-2 (SREBP-2), 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMGCR), low-density lipoprotein receptor (LDLR), and ten signaling pathways, were associated with hyperlipidemia. Finally, it was verified that the extract downregulated the protein levels of SCAP, SREBP-2, and HMGCR, and upregulated protein levels of LDLR. Conclusion. These findings provided additional evidence of the hypolipidemic effect of D. odorifera leaf extract.

The Effect of Low Irradiance on Leaf Nitrogen Allocation and Mesophyll Conductance to CO2 in Seedlings of Four Tree Species in Subtropical China

Low light intensity can lead to a decrease in photosynthetic capacity. However, could N-fixing species with higher leaf N contents mitigate the effects of low light? Here, we exposed seedlings of Dalbergia odorifera and Erythrophleum fordii (N-fixing trees), and Castanopsis hystrix and Betula alnoides (non-N-fixing trees) to three irradiance treatments (100%, 40%, and 10% sunlight) to investigate the effects of low irradiance on leaf structure, leaf N allocation strategy, and photosynthetic physiological parameters in the seedlings. Low irradiance decreased the leaf mass per unit area, leaf N content per unit area (Narea), maximum carboxylation rate (Vcmax), maximum electron transport rate (Jmax), light compensation point, and light saturation point, and increased the N allocation proportion of light-harvesting components in all species. The studied tree seedlings changed their leaf structures, leaf N allocation strategy, and photosynthetic physiological parameters to adapt to low-light environments. N-fixing plants had a higher photosynthesis rate, Narea, Vcmax, and Jmax than non-N-fixing species under low irradiance and had a greater advantage in maintaining their photosynthetic rate under low-radiation conditions, such as under an understory canopy, in a forest gap, or when mixed with other species.

A complete mitochondrial genome for fragrant Chinese rosewood (Dalbergia odorifera, Fabaceae) with comparative analyses of genome structure and intergenomic sequence transfers

Background Dalbergia odorifera is an economically and culturally important species in the Fabaceae because of the high-quality lumber and traditional Chinese medicines made from this plant, however, overexploitation has increased the scarcity of D. odorifera. Given the rarity and the multiple uses of this species, it is important to expand the genomic resources for utilizing in applications such as tracking illegal logging, determining effective population size of wild stands, delineating pedigrees in marker assisted breeding programs, and resolving gene networks in functional genomics studies. Even the nuclear and chloroplast genomes have been published for D. odorifera, the complete mitochondrial genome has not been assembled or assessed for sequence transfer to other genomic compartments until now. Such work is essential in understanding structural and functional genome evolution in a lineage (Fabaceae) with frequent intergenomic sequence transfers. Results We integrated Illumina short-reads and PacBio CLR long-reads to assemble and annotate the complete mitochondrial genome of D. odorifera. The mitochondrial genome was organized as a single circular structure of 435 Kb in length containing 33 protein coding genes, 4 rRNA and 17 tRNA genes. Nearly 4.0% (17,386 bp) of the genome was annotated as repetitive DNA. From the sequence transfer analysis, it was found that 114 Kb of DNA originating from the mitochondrial genome has been transferred to the nuclear genome, with most of the transfer events having taken place relatively recently. The high frequency of sequence transfers from the mitochondria to the nuclear genome was similar to that of sequence transfer from the chloroplast to the nuclear genome. Conclusion For the first-time, the complete mitochondrial genome of D. odorifera was assembled in this study, which will provide a baseline resource in understanding genomic evolution in the highly specious Fabaceae. In particular, the assessment of intergenomic sequence transfer suggests that transfers have been common and recent indicating a possible role in environmental adaptation as has been found in other lineages. The high turnover rate of genomic colinearly and large differences in mitochondrial genome size found in the comparative analyses herein providing evidence for the rapid evolution of mitochondrial genome structure compared to chloroplasts in Faboideae. While phylogenetic analyses using functional genes indicate that mitochondrial genes are very slowly evolving compared to chloroplast genes.

Introduction of Dalbergia odorifera enhances nitrogen absorption on Eucalyptus through stimulating microbially mediated soil nitrogen-cycling

Background There is substantial evidence that Eucalyptus for nitrogen (N) absorption and increasing the growth benefit from the introduction of N-fixing species, but the underlying mechanisms for microbially mediated soil N cycling remains unclear. Methods We investigated the changes of soil pH, soil water content (SWC), soil organic carbon (SOC), total N (TN), inorganic N (NH4+-N and NO3−-N), microbial biomass and three N-degrading enzyme activities as well as the biomass and N productivity of Eucalyptus between a pure Eucalyptus urophylla × grandis plantation (PP) and a mixed Dalbergia odorifera and Eucalyptus plantation (MP) in Guangxi Zhuang Autonomous Region, China. Results Compared with the PP site, soil pH, SWC, SOC and TN in both seasons were significantly higher at the MP site, which in turn enhanced microbial biomass and the activities of soil N-degrading enzymes. The stimulated microbial activity at the MP site likely accelerate soil N mineralization, providing more available N (NH4+-N in both seasons and NO3−-N in the wet-hot season) for Eucalyptus absorption. Overall, the N productivity of Eucalyptus at the MP site was increased by 19.7% and 21.9%, promoting the biomass increases of 15.1% and 19.2% in the dry-cold season and wet-hot season, respectively. Conclusion Our results reveal the importance of microbially mediated soil N cycling in the N absorption on Eucalyptus. Introduction of D. odorifera enhances Eucalyptus biomass and N productivity, improve soil N availability and increased soil C and N concentration, which hence can be considered to be an effective sustainable management option of Eucalyptus plantations.

Bidirectional Nitrogen Transfer and Plant Growth in a Mixed Plantation of N2-Fixing Species and Eucalyptus urophylla × E. grandis under Different N Applications

N2-fixing species play a crucial role in mixed-plantations as they improve stand productivity. To quantify the N transfer from N2-fixing species to Eucalyptus (Eucalyptus urophylla × E. grandis) in N2-fixing species/Eucalyptus plantations, we established a pot experiment and confirmed the occurrence of this process under natural conditions. The 15N was traced in labeled species as well as in neighboring tree species after labeling, and the growth was evaluated in short-term natural trials. Our results showed that a bidirectional N transfer occurred. The amount of net N transfer was 21.8–127.0 mg N plant−1, which was equal to 1.5–21.2% of the total nitrogen (TN) that accumulated in Eucalyptus plants under pot conditions, was transferred from Dalbergia odorifera to Eucalyptus. The amount of N transferred significantly decreased with the increasing N application rate but increased with time after labeling. Compared with the results for the Eucalyptus monocrop, the soil N concentration (including NO3−-N and NH4+-N) greatly improved when D. odorifera was introduced together with Eucalyptus under both field and pot conditions. Furthermore, the results under field conditions were consistent with the results of the pot experiment. The dry matter (DM) yield (14.5–16.4%) and the N content (5.1–9.6%) in Eucalyptus increased when mixed together with D. odorifera, but the N content in and DM yield of D. odorifera slightly decreased. It is concluded that the N transfer between Eucalyptus and D. odorifera is a much more important dynamic process than previously recognized, and Eucalyptus and legume intercropping is a successful management practice because N transfer provides a significant amount of N required for Eucalyptus productivity.