DECUSSATE network with flowering genes explains the variable effects of qDTY12.1 to rice yield under drought across genetic backgrounds

In this study, we aimed to improve rice farmers’ productivity and profitability in rainfed lowlands through appropriate crop and nutrient management by closing the rice yield gap during the dry season in the rainfed lowlands of Indonesia. The Integrated Crop Management package, involving recommended practices (RP) from the Indonesian Agency for Agricultural Research and Development (IAARD), were compared to the farmers’ current practices at ten farmer-participatory demonstration plots across ten provinces of Indonesia in 2019. The farmers’ practices (FP) usually involved using old varieties in their remaining land and following their existing fertilizer management methods. The results indicate that improved varieties and nutrient best management practices in rice production, along with water reservoir infrastructure and information access, contribute to increasing the productivity and profitability of rice farming. The mean rice yield increased significantly with RP compared with FP by 1.9 t ha–1 (ranges between 1.476 to 2.344 t ha–1), and net returns increased, after deducting the cost of fertilizers and machinery used for irrigation supplements, by USD 656 ha–1 (ranges between USD 266.1 to 867.9 ha–1) per crop cycle. This represents an exploitable yield gap of 37%. Disaggregated by the wet climate of western Indonesia and eastern Indonesia’s dry climate, the RP increased rice productivity by 1.8 and 2.0 t ha–1, with an additional net return gain per cycle of USD 600 and 712 ha–1, respectively. These results suggest that there is considerable potential to increase the rice production output from lowland rainfed rice systems by increasing cropping intensity and productivity. Here, we lay out the potential for site-specific variety and nutrient management with appropriate crop and supplemental irrigation as an ICM package, reducing the yield gap and increasing farmers’ yield and income during the dry season in Indonesia’s rainfed-prone areas.

Download Full-text

Empirical Analyses on Rice Yield Determinants of Smart Farming in Japan

10.1007/978-981-33-6256-7 ◽

2021 ◽

Keyword(s):

Rice Yield ◽

Smart Farming ◽

Yield Determinants ◽

Empirical Analyses

Download Full-text

Effect of Digestate and Straw Combined Application on Maintaining Rice Production and Paddy Environment

International Journal of Environmental Research and Public Health ◽

10.3390/ijerph18115714 ◽

2021 ◽

Vol 18 (11) ◽

pp. 5714

Author(s):

Xue Hu ◽

Hongyi Liu ◽

Chengyu Xu ◽

Xiaomin Huang ◽

Min Jiang ◽

...

Keyword(s):

Organic Matter ◽

Surface Water ◽

Soil Organic Matter ◽

Paddy Soil ◽

Rice Yield ◽

Soil Surface ◽

Rice Production ◽

Straw Decomposition ◽

Rice Grains ◽

Combined Application

Few studies have focused on the combined application of digestate and straw and its feasibility in rice production. Therefore, we conducted a two-year field experiment, including six treatments: without nutrients and straw (Control), digestate (D), digestate + fertilizer (DF), digestate + straw (DS), digestate + fertilizer + straw (DFS) and conventional fertilizer + straw (CS), to clarify the responses of rice growth and paddy soil nutrients to different straw and fertilizer combinations. Our results showed that digestate and straw combined application (i.e., treatment DFS) increased rice yield by 2.71 t ha−1 compared with the Control, and digestate combined with straw addition could distribute more nitrogen (N) to rice grains. Our results also showed that the straw decomposition rate at 0 cm depth under DS was 5% to 102% higher than that under CS. Activities of catalase, urease, sucrase and phosphatase at maturity under DS were all higher than that under both Control and CS. In addition, soil organic matter (SOM) and total nitrogen (TN) under DS and DFS were 20~26% and 11~12% higher than that under B and DF respectively, suggesting straw addition could benefit paddy soil quality. Moreover, coupling straw and digestate would contribute to decrease the N content in soil surface water. Overall, our results demonstrated that digestate and straw combined application could maintain rice production and have potential positive paddy environmental effects.

Download Full-text

Ginger Essential Oils-Loaded Nanoemulsions: Potential Strategy to Manage Bacterial Leaf Blight Disease and Enhanced Rice Yield

Molecules ◽

10.3390/molecules26133902 ◽

2021 ◽

Vol 26 (13) ◽

pp. 3902

Author(s):

Abdullahi Adamu ◽

Khairulmazmi Ahmad ◽

Yasmeen Siddiqui ◽

Intan Safinar Ismail ◽

Norhayu Asib ◽

...

Keyword(s):

Antibacterial Activity ◽

Electron Microscope ◽

Essential Oils ◽

Disease Severity ◽

Rice Yield ◽

Cell Structure ◽

Leaf Blight ◽

Bacterial Leaf Blight ◽

Control Treatment ◽

Promising Alternative

The bacterial leaf blight (BLB) caused by Xanthomonas oryzae pv. oryzae (Xoo) is one of the most serious rice diseases, causing huge yield losses worldwide. Several technologies and approaches have been opted to reduce the damage; however, these have had limited success. Recently, scientists have been focusing their efforts on developing efficient and environmentally friendly nanobactericides for controlling bacterial diseases in rice fields. In the present study, a scanning electron microscope (SEM), transmission electron microscope (TEM), and a confocal laser scanning microscope (CLSM) were utilized to investigate the mode of actions of ginger EOs on the cell structure of Xoo. The ginger EOs caused the cells to grow abnormally, resulting in an irregular form with hollow layers, whereas the dimethylsulfoxide (DMSO) treatment showed a typical rod shape for the Xoo cell. Ginger EOs restricted the growth and production of biofilms by reducing the number of biofilms generated as indicated by CLSM. Due to the instability, poor solubility, and durability of ginger EOs, a nanoemulsions approach was used, and a glasshouse trial was performed to assess their efficacy on BLB disease control. The in vitro antibacterial activity of the developed nanobactericides was promising at different concentration (50–125 µL/mL) tested. The efficacy was concentration-dependent. There was significant antibacterial activity recorded at higher concentrations. A glasshouse trial revealed that developed nanobactericides managed to suppress BLB disease severity effectively. Treatment at a concentration of 125 μL/mL was the best based on the suppression of disease severity index, AUDPC value, disease reduction (DR), and protection index (PI). Furthermore, findings on plant growth, physiological features, and yield parameters were significantly enhanced compared to the positive control treatment. In conclusion, the results indicated that ginger essential oils loaded-nanoemulsions are a promising alternative to synthetic antibiotics in suppressing Xoo growth, regulating the BLB disease, and enhancing rice yield under a glasshouse trial.

Download Full-text

Rice yield variability in Punjab: an overview of five decades

Paddy and Water Environment ◽

10.1007/s10333-021-00866-3 ◽

2021 ◽

Author(s):

Prabhjyot-Kaur ◽

S. S. Sandhu ◽

Buta Singh Dhillon ◽

Harpreet Singh

Keyword(s):

Rice Yield ◽

Yield Variability

Download Full-text

Comprehensive analysis of SSRs and database construction using all complete gene-coding sequences in major horticultural and representative plants

Horticulture Research ◽

10.1038/s41438-021-00562-7 ◽

2021 ◽

Vol 8 (1) ◽

Author(s):

Xiaoming Song ◽

Qihang Yang ◽

Yun Bai ◽

Ke Gong ◽

Tong Wu ◽

...

Keyword(s):

Higher Plants ◽

Extreme Environments ◽

Gene Families ◽

Comprehensive Analysis ◽

Whole Genome ◽

Flowering Genes ◽

Database Construction ◽

Myb Gene ◽

Gene Coding ◽

Lower Plants

AbstractSimple sequence repeats (SSRs) are one of the most important genetic markers and widely exist in most species. Here, we identified 249,822 SSRs from 3,951,919 genes in 112 plants. Then, we conducted a comprehensive analysis of these SSRs and constructed a plant SSR database (PSSRD). Interestingly, more SSRs were found in lower plants than in higher plants, showing that lower plants needed to adapt to early extreme environments. Four specific enriched functional terms in the lower plant Chlamydomonas reinhardtii were detected when it was compared with seven other higher plants. In addition, Guanylate_cyc existed in more genes of lower plants than of higher plants. In our PSSRD, we constructed an interactive plotting function in the chart interface, and users can easily view the detailed information of SSRs. All SSR information, including sequences, primers, and annotations, can be downloaded from our database. Moreover, we developed Web SSR Finder and Batch SSR Finder tools, which can be easily used for identifying SSRs. Our database was developed using PHP, HTML, JavaScript, and MySQL, which are freely available at http://www.pssrd.info/. We conducted an analysis of the Myb gene families and flowering genes as two applications of the PSSRD. Further analysis indicated that whole-genome duplication and whole-genome triplication played a major role in the expansion of the Myb gene families. These SSR markers in our database will greatly facilitate comparative genomics and functional genomics studies in the future.

Download Full-text

Evaluation of weed control in acetyl coA carboxylase-resistant rice with mixtures of quizalofop and auxinic herbicides

Weed Technology ◽

10.1017/wet.2019.134 ◽

2019 ◽

Vol 34 (4) ◽

pp. 498-505

Author(s):

Tameka L. Sanders ◽

Jason A. Bond ◽

Benjamin H. Lawrence ◽

Bobby R. Golden ◽

Thomas W. Allen ◽

...

Keyword(s):

Weed Control ◽

Rice Yield ◽

Field Studies ◽

Growth Stages ◽

Acetyl Coa Carboxylase ◽

Acetyl Coa ◽

Herbicide Treatments ◽

Herbicide Mixture ◽

Sequential Treatments ◽

And Control

AbstractRice with enhanced tolerance to herbicides that inhibit acetyl coA carboxylase (ACCase) allows POST application of quizalofop, an ACCase-inhibiting herbicide. Two concurrent field studies were conducted in 2017 and 2018 near Stoneville, MS, to evaluate control of grass (Grass Study) and broadleaf (Broadleaf Study) weeds with sequential applications of quizalofop alone and in mixtures with auxinic herbicides applied in the first or second application. Sequential treatments of quizalofop were applied at 119 g ai ha−1 alone and in mixtures with labeled rates of auxinic herbicides to rice at the two- to three-leaf (EPOST) or four-leaf to one-tiller (LPOST) growth stages. In the Grass Study, no differences in rice injury or control of volunteer rice (‘CL151’ and ‘Rex’) were detected 14 and 28 d after last application (DA-LPOST). Barnyardgrass control at 14 and 28 DA-LPOST with quizalofop applied alone or with auxinic herbicides EPOST was ≥93% for all auxinic herbicide treatments except penoxsulam plus triclopyr. Barnyardgrass control was ≥96% with quizalofop applied alone and with auxinic herbicides LPOST. In the Broadleaf Study, quizalofop plus florpyrauxifen-benzyl controlled more Palmer amaranth 14 DA-LPOST than other mixtures with auxinic herbicides, and control with this treatment was greater EPOST compared with LPOST. Hemp sesbania control 14 DA-LPOST was ≤90% with quizalofop plus quinclorac LPOST, orthosulfamuron plus quinclorac LPOST, and triclopyr EPOST or LPOST. All mixtures except quinclorac and orthosulfamuron plus quinclorac LPOST controlled ivyleaf morningglory ≥91% 14 DA-LPOST. Florpyrauxifen-benzyl or triclopyr were required for volunteer soybean control >63% 14 DA-LPOST. To optimize barnyardgrass control and rice yield, penoxsulam plus triclopyr and orthosulfamuron plus quinclorac should not be mixed with quizalofop. Quizalofop mixtures with auxinic herbicides are safe and effective for controlling barnyardgrass, volunteer rice, and broadleaf weeds in ACCase-resistant rice, and the choice of herbicide mixture could be adjusted based on weed spectrum in the treated field.

Download Full-text