scholarly journals Genetic adaptation to urban living: molecular DNA analyses of wild boar populations in Budapest and surrounding area

2022 ◽  
Author(s):  
Attila Zsolnai ◽  
Adrienn Csókás ◽  
László Szabó ◽  
László Patkó ◽  
Sándor Csányi ◽  
...  
Keyword(s):  
Wild Boar ◽  
Snp Markers ◽  
Allele Distribution ◽  
Continuous Contact ◽  
Suburban Areas ◽  
Inbreeding Coefficients ◽  
Snp Data ◽  
Discrete Population ◽  
A Chain ◽  
The City

AbstractStudies of wild boar, Sus scrofa Linnaeus 1758, in urban and suburban areas of Budapest, Hungary, have indicated that these populations do not have continuous contact. Based on the assumption that the city has a discrete population, we hypothesized that the urban wild boar would differ genetically from those in suburban areas. Analysis of single-nucleotide polymorphism (SNP) data using the GeneSeek Genomic Profiler (GGP) Porcine 50 K system (Neogen, Scotland, UK) differentiated three populations: Buda (B) from the Western bank of the Danube; Buda Surrounding (BS); and Valkó (V) from the Eastern bank of the Danube. The coefficient of genetic differentiation (FST) for the B and BS populations was low. The inbreeding coefficients of the populations BS and V were close to zero, while population B had a high positive value reflecting the influence of founders and the inbreeding of the continuous urban population. The genome regions that were most differentiated between the B and BS populations were analyzed based on the FST values of the SNP markers using a mixed linear multi-locus model and BayeScan software. The most differentiated marker, WU_10.2_18_56278226, was found on chromosome 18. The surrounding region contained several candidate genes that could play important roles in adaptations related to human-induced stress. Two of these, encoding the adenylate cyclase 1 (ADCY1) and inhibin beta A chain precursor (INHBA) genes, were sequenced. While IHBA gene did not display variation, the allele distribution of the ADCY1 gene in the B population was significantly different from that of the BS population supporting the parapatric differentiation of wild boar.

An enrichment method for mapping ambiguous reads to the reference genome for NGS analysis

2019 ◽  
Vol 17 (06) ◽  
pp. 1940012
Author(s):  
Yuan Liu ◽  
Yongchao Ma ◽  
Evan Salsman ◽  
Frank A. Manthey ◽  
Elias M. Elias ◽  
...  
Keyword(s):  
Reference Genome ◽  
Association Studies ◽  
Large Fraction ◽  
Snp Markers ◽  
Alternative Methods ◽  
Probability Method ◽  
Genome Wide Association Studies ◽  
Enrichment Method ◽  
Allele Distribution ◽  
Random Method

Mapping short reads to a reference genome is an essential step in many next-generation sequencing (NGS) analyses. In plants with large genomes, a large fraction of the reads can align to multiple locations of the genome with equally good alignment scores. How to map these ambiguous reads to the genome is a challenging problem with big impacts on the downstream analysis. Traditionally, the default method is to assign an ambiguous read randomly to one of the many potential locations. In this study, we explore two alternative methods that are based on the hypothesis that the possibility of an ambiguous read being generated by a location is proportional to the total number of reads produced by that location: (1) the enrichment method that assigns an ambiguous read to the location that has produced the most reads among all the potential locations, (2) the probability method that assigns an ambiguous read to a location based on a probability proportional to the number of reads the location produces. We systematically compared the performance of the proposed methods with that of the default random method. Our results showed that the enrichment method produced better results than the default random method and the probability method in the discovery of single nucleotide polymorphisms (SNPs). Not only did it produce more SNP markers, but it also produced SNP markers with better quality, which was demonstrated using multiple mainstay genomic analyses, including genome-wide association studies (GWAS), minor allele distribution, population structure, and genomic prediction.

Movie Variety and the City

2020 ◽  
Vol 20 (3) ◽  
Author(s):  
In Kyung Kim
Keyword(s):  
Longitudinal Data ◽  
Ownership Structure ◽  
Price Competition ◽  
Product Variety ◽  
A Chain ◽  
The City ◽  
Positive Effect

AbstractIn this article, I study the effect of entry and ownership structure on product variety within a city. Using longitudinal data on theaters in Korea, I find that the positive effect of entry on city-wide movie variety is limited only to the first few entrants. This finding, together with the observation that movie variety in a theater does not respond to entry, suggests that a theater's incentive to soften price competition by screening less popular movies not otherwise available in the city decreases as more theaters enter. I also find evidence that movie variety is greater in more concentrated cities, implying that a chain that owns multiple theaters in a city may differentiate the movie lineup offered in each theater more than when the theaters are individually owned in order to avoid cannibalization or to preempt entry.

SPATIAL STRUCTURE TRANSFORMATION OF THE ULAN-UDE CITY WESTERN AND SOUTHERN SUBURBS

2021 ◽  
Vol 27 (5) ◽  
pp. 99-106
Author(s):  
А. Badmaev ◽  
◽  
В. Sharaldaev ◽  
Keyword(s):  
Spatial Structure ◽  
Road Transport ◽  
Residential Areas ◽  
City Center ◽  
Huge Number ◽  
Non Profit ◽  
Suburban Areas ◽  
Historical Factors ◽  
The Village ◽  
The City

The article analyzes the processes of suburbanization and transformation of the spatial structure of the city of Ulan-Ude. Modern trends in the growth of Western and historical factors of development, due to socio-economic and historical factors of development. In the 1990s-2000s, because of the decline in agriculture and, as a result, the lack of jobs, the rural population began to migrate massively to the Buryat Republic’s capital. However, the prices for houses and apartments in the city center were unbearable for many migrants, so the purchase of land plots and the construction of houses were affordable for many. The estrangement of agricultural lands and their inclusion in residential areas allowed the city of Ulan-Ude and suburban areas to somewhat expand the territory of settlements and create a huge number of GNPP (gardeners non-profit partnership) and DNPP (dacha non-profit partnership). The city and suburban areas were not ready for such a flow and were not able to provide the newly arrived migrants with social, road transport and communal infrastructure. As a result, the city was surrounded by a suburbia almost devoid of any infrastructure. There are some elements of false urbanization or squatter area, which is a type of urbanization in which the urban population rapid growth is not accompanied by a commensurate increase in urban functions. In recent years, the growth rate of suburban settlements has decreased, mainly due to mortgages, which have become more affordable for the population and the growth of multi-storey construction. In addition, the village is slowly depleting the human resources that feed the city and the suburbs. In other words, those who wanted to move to the city have already moved

scholarly journals Migrations of city dwellers to suburban areas – the example of the city of Olsztyn

2012 ◽  
Vol 18 (18) ◽  
pp. 117-124 ◽  
Author(s):  
Agnieszka Szczepańska ◽  
Adam Senetra
Keyword(s):  
Spatial Structure ◽  
Precast Concrete ◽  
Residential Areas ◽  
Dominant Group ◽  
Migration Patterns ◽  
Rural Districts ◽  
Concrete Buildings ◽  
Suburban Areas ◽  
The City

AbstractThe migration of city dwellers to suburbs is a commonly observed phenomenon. The growth of residential areas on the fringes of cities is referred to as suburbanisation. In the present study, migration patterns were investigated in rural districts located in the direct vicinity of the administrative boundaries of Olsztyn over a 10-year timespan. Several hundred building plot purchase/sale transactions in the form of notarial deeds were analysed to determine the dwelling place of the buyer. The analysis of the transactions revealed that the dominant group of purchasers were owners of apartments in multi-family precast concrete buildings, located in the city quarter closest to the studied suburbs. Changes in the spatial structure of suburban areas were also noted.

scholarly journals Prediksi Perubahan Penggunaan Lahan dan Pola Berdasarkan Citra Landsat Multi Waktu dengan Land Change Modeler (LCM)

2021 ◽  
Vol 5 (1) ◽  
pp. 10-18
Author(s):  
Herlawati Herlawati ◽  
Fata Nidaul Khasanah ◽  
Prima Dina Atika ◽  
Rafika Sari ◽  
Rahmadya Trias Handayanto
Keyword(s):  
Land Use ◽  
Suburban Areas ◽  
Green Areas ◽  
Accuracy Result ◽  
Prediction And Forecasting ◽  
Business As Usual ◽  
The City ◽  
Land Types ◽  
Regional Types

Land use/cover greatly affect the quality of an area. Therefore, many regional planners need assistance byother fields, such as geoinformatics, computer science, environment, and others. Although prediction and forecasting have been widely studied, in regardto real conditions (geospatial)itstill needmoredevelopment, especially thoseinvolving a combination of regional types, such as urban and suburban areas. This study uses a remote sensing base and geographic information system in predicting land in the city and district of Bekasi, West Java, Indonesia. With two scenarios compared (business as usual and vegetation conservation), the model that has been created and validated (with an AUC accuracy result of 0.828) is used to predict land use change until 2030. Scenarios with vegetation conservation are able to keep green areas to switch to land types others, such as buildings and industry

scholarly journals Metodología para la rehabilitación de grandes centros comerciales

2018 ◽  
Author(s):  
Jorge Carretero Monteagudo
Keyword(s):  
Urban Area ◽  
Sao Paulo ◽  
Shopping Mall ◽  
Low Density ◽  
São Paulo ◽  
Shopping Malls ◽  
Urban Background ◽  
Suburban Areas ◽  
Architectural Features ◽  
The City

El estudio de las características urbanas y arquitectónicas, y las posibles medidas de rehabilitación para los centros comerciales de gran tamaño, fueron el punto de partida para evaluar la sostenibilidad medioambiental y urbana de los mismos. En la presente tesis, se desarrolló una metodología de evaluación de cara al análisis de las medidas de rehabilitación que pudieran aplicarse sobre un centro comercial. Se consideraron cuatro familias de medidas: Rehabilitación ecoeficiente, inserción de elementos verdes, inserción de usos en el centro, y una familia de medidas de rehabilitación aplicadas sobre el entorno urbano. Ocho casos de centros comerciales fueron analizados: tres en el contexto urbano de Sao Paulo, tres en el contexto urbano de Madrid, y tres en el contexto de la Norteamérica suburbana. El resultado del estudio permitió establecer un criterio para orientar las operaciones de rehabilitación de centros comerciales hacia ciertos ámbitos de la sostenibilidad. Las conclusiones finales del estudio fueron que es importante considerar varias medidas de rehabilitación de forma simultánea, a la vez que considerar en la escala urbana global para lograr una mejora relevante de cara a la sostenibilidad. Esto último especialmente en centros comerciales ubicados en entornos periféricos de baja densidad. Abstract. The studio of both the urban and architectural features, as well as the retrofitting means of application on a shopping mall, was the parting point to evaluate the sustainability of large surface shopping malls. A methodology to evaluate the efficacy of the retrofitting means of application on malls was developed, considering four families of retrofitting means: Eco efficient refurbishment, insertion of green elements, insertion of uses, and a family of retrofitting means applied in the urban area surrounding the mall. Eight cases were analyzed: Three located in the urban background of the city of Sao Paulo, Three located in Madrid, and two located in the background of the Suburban U.S.A. The result of this study was the establishment of criteria to focus the operations of any retrofitting program applied on a shopping mall towards some facts related to sustainability. Being the final conclusions, the affirmation that is important to consider various means of retrofitting simultaneously on the shopping mall, as well as to consider the wide urban scale to be retrofitted, in order to achieve a relevant improvement towards sustainability. Specially in cases of shopping malls located in low density suburban areas.

Transformation of Rural Areas with High Urban Impact: the Example of the Largest Cities in the Warmia and Mazury Region

2017 ◽  
Author(s):  
Agnieszka Szczepanska ◽  
Monika Wasilewicz-Pszczółkowska ◽  
Iwona Krzywnicka ◽  
Adam Senetra
Keyword(s):  
Rural Areas ◽  
Demographic Changes ◽  
Landscape Changes ◽  
Urban Centers ◽  
Urban Impact ◽  
Suburban Areas ◽  
Spatial Changes ◽  
Rural Municipalities ◽  
Administrative Units ◽  
The City

The paper discusses rural transformations resulting from urban influences. The analyzed area consists of rural municipalities (the smallest administrative units in Poland) in the immediate vicinity of Olsztyn, Elblag and Ełk – the largest cities in Warmia and Mazury. The type and rate of social and spatial changes in rural areas with high urban impact were analyzed. The following issues have been addressed: – a comparison between demographic changes in rural municipalities neighboring on urban centres and demographic changes in the city, – changes in the land use structure of rural municipalities neighboring on urban centers, with particular emphasis on open and protected spaces, – architectural changes in the analyzed suburban areas, – landscape changes in the analyzed suburban areas.

Epilogue

2019 ◽  
pp. 259-260
Author(s):  
Kevin C. O'Connor
Keyword(s):  
Russian Empire ◽  
Suburban Areas ◽  
To Come ◽  
The Russian Empire ◽  
The Many ◽  
The City

This concluding chapter details the aftermath of the city of Riga, as well as the changes it experienced, after falling to Russian rule. The migration of Jews to Riga, and of Russian officials and laborers, are among the many developments that would take place during the two centuries that followed Riga's capitulation to the tsar. The city's renovation and the appearance of dozens of yellow-brick factory buildings in the suburbs were still to come. The ruined city that fell to Tsar Peter I in 1710 had none of the parks, canals, gardens, and urban villas that would transform Riga into one of northeastern Europe's most attractive and welcoming cities during the twilight years of the Russian Empire. Yet, as this chapter shows, even as Riga tore down its medieval walls in the 1850s and incorporated the suburban areas, where promenades and beautiful homes were built for the city's prosperous bourgeoisie, the oldest parts of Riga would retain many of their traditional features into present times.

City Group Optimization

2016 ◽  
Vol 7 (3) ◽  
pp. 1-22
Author(s):  
Yijun Yang ◽  
Haibin Duan
Keyword(s):  
Optimization Algorithm ◽  
Central City ◽  
Evolutionary Process ◽  
Local Optima ◽  
Central Cities ◽  
Continuous Problems ◽  
Comparative Results ◽  
A Chain ◽  
The City ◽  
City Group

City group refers to a collection of cities. Through the development and growth, and these cities form a chain of metropolitan areas. In a city group, cities are divided into central cities and subordinate cities. Generally, central cities have greater chances to develop. However, subordinate cities may not have great chances to develop unless they are adjacent to central cities. Thus, a city is more likely to develop well if it is near a central city. In the process, the spatial distribution of cities changes all the time. Urbanologists call the above phenomena as the evolution of city groups. In this paper, the city group optimization algorithm is presented, which is based on urbanology and mimics the evolution of city groups. The robustness and evolutionary process of the proposed city group optimization algorithm are validated by testing it on 15 benchmark functions. The comparative results show that the proposed algorithm is effective for solving complexly continuous problems due to a stronger ability to escape from local optima.

scholarly journals Preventing Dog Bites: It Is Not Only about the Dog

Animals ◽  
2020 ◽  
Vol 10 (4) ◽  
pp. 666 ◽  
Author(s):  
Laura A. Reese ◽  
Joshua J. Vertalka
Keyword(s):  
Multiple Regression ◽  
Research Methods ◽  
Human Error ◽  
Police Department ◽  
Health Impacts ◽  
Dog Bites ◽  
Home Based ◽  
Feral Dogs ◽  
A Chain ◽  
The City

Background: Dog bites can have an array of negative health impacts on victims. Research focusing on the correlates of bites focused on limited sets of variables and produced conflicting findings. Objective: To expand knowledge about the correlates of dog bites by exploring a comprehensive set of variables related to the nature of the dog and the circumstances surrounding the bite not commonly explored in extant research. Methods: Data were drawn from police department reports of dog bites in the city of Detroit between 2007–2015; 478 dog bites were reported. Multiple regression was used to determine the significant correlates of dog bites, focusing on the nature of the dog and the circumstances surrounding the bite. Results: Bites were caused by a neighborhood dog. Thirty-two percent of the reports involved dogs running loose; 25% dogs that had escaped from a fenced or unfenced yard; 9% escaped from their home; and 8% had broken off a chain, were being walked, or were in their own home. Based on multiple regression, the victim was most likely bitten in their own yard by a single neighborhood dog that escaped from its home or yard. Breed of dog was not correlated with bites in multiple regression. Conclusions: The greatest risk of bites does not come from wandering feral dogs. Based on multiple regression, the victim was most likely bitten in their own yard by a single neighborhood dog that escaped from its home or yard. Human error often contributes to bites.

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