scholarly journals Prevalence of virulence genes and antibiotic susceptibility of Bacillus used in commercial aquaculture probiotics in China

2021 ◽  
Vol 21 ◽  
pp. 100784
Author(s):  
Melody Abena Anokyewaa ◽  
Kwaku Amoah ◽  
Yuan Li ◽  
Yishan Lu ◽  
Felix K.A. Kuebutornye ◽  
...  
Keyword(s):  
Antibiotic Susceptibility ◽  
Virulence Genes

scholarly journals Burden, Antibiotic Resistance, and Clonality of Shigella spp. Implicated in Community-Acquired Acute Diarrhoea in Lilongwe, Malawi

2021 ◽  
Vol 6 (2) ◽  
pp. 63
Author(s):  
Abel F.N.D. Phiri ◽  
Akebe Luther King Abia ◽  
Daniel Gyamfi Amoako ◽  
Rajab Mkakosya ◽  
Arnfinn Sundsfjord ◽  
...  
Keyword(s):  
Real Time ◽  
Antibiotic Susceptibility ◽  
Virulence Genes ◽  
Shigella Flexneri ◽  
Acute Diarrhoea ◽  
Virulence Determinants ◽  
African Countries ◽  
Shigella Species ◽  
Shigella Spp ◽  
Sub Saharan

Although numerous studies have investigated diarrhoea aetiology in many sub-Saharan African countries, recent data on Shigella species’ involvement in community-acquired acute diarrhoea (CA-AD) in Malawi are scarce. This study investigated the incidence, antibiotic susceptibility profile, genotypic characteristics, and clonal relationships of Shigella flexneri among 243 patients presenting with acute diarrhoea at a District Hospital in Lilongwe, Malawi. Shigella spp. were isolated and identified using standard microbiological and serological methods and confirmed by identifying the ipaH gene using real-time polymerase chain reaction. The isolates’ antibiotic susceptibility to 20 antibiotics was determined using the VITEK 2 system according to EUCAST guidelines. Genes conferring resistance to sulfamethoxazole (sul1, sul2 and sul3), trimethoprim (dfrA1, dfrA12 and dfrA17) and ampicillin (oxa-1 and oxa-2), and virulence genes (ipaBCD, sat, ial, virA, sen, set1A and set1B) were detected by real-time PCR. Clonal relatedness was assessed using ERIC-PCR. Thirty-four Shigella flexneri isolates were isolated (an overall incidence of 14.0%). All the isolates were fully resistant to sulfamethoxazole/trimethoprim (100%) and ampicillin (100%) but susceptible to the other antibiotics tested. The sul1 (79%), sul2 (79%), sul3 (47%), dfrA12 (71%) and dfrA17 (56%) sulfonamide and trimethoprim resistance genes were identified; Oxa-1, oxa-2 and dfrA1 were not detected. The virulence genes ipaBCD (85%), sat (85%), ial (82%), virA (76%), sen (71%), stx (71%), set1A (26%) and set1B (18%) were detected. ERIC-PCR profiling revealed that the Shigella isolates were genetically distinct and clonally unrelated, indicating the potential involvement of genetically distinct S. flexneri in CA-AD in Malawi. The high percentage resistance to ampicillin and sulfamethoxazole/trimethoprim and the presence of several virulence determinants in these isolates emphasises a need for continuous molecular surveillance studies to inform preventive measures and management of Shigella-associated diarrhoeal infections in Malawi.

scholarly journals Assessment of Pathogenic Potential, Virulent Genes Profile, and Antibiotic Susceptibility of Proteus mirabilis from Urinary Tract Infection

2020 ◽  
Vol 2020 ◽  
pp. 1-5 ◽  
Author(s):  
Emad I. Hussein ◽  
Khalid Al-Batayneh ◽  
Majed M. Masadeh ◽  
Fatina W. Dahadhah ◽  
Mazhar Salim Al Zoubi ◽  
...  
Keyword(s):  
Urinary Tract Infection ◽  
Urinary Tract ◽  
Antimicrobial Susceptibility ◽  
Proteus Mirabilis ◽  
Antibiotic Susceptibility ◽  
Virulence Genes ◽  
Detection Method ◽  
Pathogenic Potential ◽  
The Third ◽  
Urine Specimens

Proteus mirabilis is the third most common bacterium that can cause complicated UTI, especially in catheterized patients. Urovirulence genes of P. mirabilis strains are poorly identified among UTI patients. The aims of the present study were to determine the prevalence of the uropathogenic P. mirabilis strains isolated from UTI patients by the detection of several P. mirabilis virulence genes and to characterize the antibiotic susceptibility profile of P. mirabilis isolates. P. mirabilis isolates were collected from urine specimens of patients suffering from UTI. Virulence genes in P. mirabilis, namely, hpmA, hpmB, rsbA, luxS, ureC1, hlyA, rpoA, atfA, atfC, mrpA, and pm1 were detected in the isolates via PCR detection method. All P. mirabilis virulence genes were detected in more than 90% of the isolates except hlyA gene, which was detected in only 23.8% of the isolates. The rate of susceptibility for ceftriaxone was 96.8%, followed by norfloxacin (82.5%), gentamicin (71.4%), ciprofloxacin (69.8%), cephalexin (52.4%), nalidixic acid (42.9%), sulfamethoxazole (39.7%), ampicillin (36.5%), and nitrofurantoin (3.2%). Significant associations (P<0.05) were detected between antimicrobial susceptibility of each of the following antibiotics and the presence virulence genes. Cephalexin antimicrobial susceptibility was significantly associated with the presence each of ureC1 and atfC. Sulfamethoxazole antimicrobial susceptibility was significantly associated with the presence atfA. Ceftriaxone antimicrobial susceptibility was significantly associated with the presence each of hpmA, ureC1, rpoA, atfC, mrpA, and pm1. Nitrofurantoin antimicrobial susceptibility was significantly associated with the presence each of hpmA, ureC1, rpoA, atfA, atfC, mrpA, and pm1. In conclusion, an association between the presence of urovirulence genes of P. mirabilis and increasing P. mirabilis resistance to antimicrobials has been demonstrated.

scholarly journals Clinical Specimens are the Pool of oprL and toxA Virulence Genes Harboring Multidrug-Resistant Pseudomonas aeruginosa: Findings from a Tertiary Hospital of Nepal

2021 ◽  
Vol 2021 ◽  
pp. 1-8
Author(s):  
Yamuna Chand ◽  
Sujan Khadka ◽  
Sanjeep Sapkota ◽  
Suprina Sharma ◽  
Santosh Khanal ◽  
...  
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Antibiotic Susceptibility ◽  
Virulence Genes ◽  
Tertiary Hospital ◽  
Multidrug Resistant ◽  
Diffusion Method ◽  
Clinical Settings ◽  
Global Public Health ◽  
Clinical Specimens ◽  
First Time

The multidrug- or extensively drug-resistant (MDR/XDR) Pseudomonas aeruginosa carrying some virulence genes has become a global public health threat. However, in Nepal, there is no existing report showing the prevalence of oprL and toxA virulence genes among the clinical isolates of P. aeruginosa. Therefore, this study was conducted for the first time in the country to detect the virulence genes (oprL and toxA) and antibiotic susceptibility pattern of P. aeruginosa. A total of 7,898 clinical specimens were investigated following the standard microbiological procedures. The antibiotic susceptibility testing was examined by the modified disc diffusion method, and virulence genes oprL and toxA of P. aeruginosa were assessed using multiplex PCR. Among the analyzed specimens, 87 isolates were identified to be P. aeruginosa of which 38 (43.68%) isolates were reported as MDR. A higher ratio of P. aeruginosa was detected from urine samples 40 (45.98%), outpatients’ specimens 63 (72.4%), and in patients of the age group of 60–79 years 36 (41.37%). P. aeruginosa was more prevalent in males 56 (64.36%) than in female patients 31 (35.63%). Polymyxin (83.90%) was the most effective antibiotic. P. aeruginosa (100%) isolates harboured the oprL gene, while 95.4% of isolates were positive for the toxA gene. Identification of virulence genes such as oprL and toxA carrying isolates along with the multidrug resistance warrants the need for strategic interventions to prevent the emergence and spread of antimicrobial resistance (AMR). The findings could assist in increasing awareness about antibiotic resistance and suggest the judicious prescription of antibiotics to treat the patients in clinical settings of Nepal.

scholarly journals Virulence typing and antibiotic susceptibility profiling of thermophilic Campylobacters isolated from poultry, animal, and human species

2018 ◽  
pp. 1698-1705 ◽  
Author(s):  
Neelam Rawat ◽  
Maansi ◽  
Deepak Kumar ◽  
A. K. Upadhyay
Keyword(s):  
Antibiotic Susceptibility ◽  
Virulence Genes ◽  
Laboratory Animals ◽  
Campylobacter Coli ◽  
Human Beings ◽  
Foodborne Illnesses ◽  
Human Illness ◽  
Poultry Droppings ◽  
Virulence Typing ◽  
Extraintestinal Complications

Background and Aim: Campylobacteriosis finds its place among the four important global foodborne illnesses. The disease, though self-limiting, needs antibacterial therapy in extraintestinal complications. Therefore, the present study was designed to estimate the prevalence of thermophilic Campylobacters in poultry, animals, and humans of the Kumaon region of Uttarakhand. Materials and Methods: A total of 609 samples comprising of poultry ceca (n=116), poultry droppings (n=203), and feces of pigs (n=71), cattle (n=61), sheep (n=19), goat (n=17), human beings (n=88), and laboratory animals (n=34) (rats, rabbits, and guinea pigs) were collected. The thermophilic Campylobacters, Campylobacter jejuni and Campylobacter coli were confirmed using multiplex polymerase chain reaction. The isolates were also screened for the presence of virulence genes, and their antibiotic susceptibility testing was done against eight antibiotics. Results: An overall prevalence of 6.24% was revealed with highest from poultry ceca (15.52%), followed by poultry droppings (5.91%), cattle feces (4.92%), human stools (3.40%), and pig feces (2.82%). The virulence genes, namely cadF, flaA, virB11, and pldA, were present in 38 (100%), 37 (97.37%), 7 (18.42%), and 14 (36.84%) isolates, respectively. All the isolates were resistant to nalidixic acid, while all were sensitive to erythromycin and co-trimoxazole. Conclusion: It was concluded that the animals and humans in the region harbored the thermophilic Campylobacters which may contribute to the human illness. Resistance shown among the isolates may complicate the antimicrobial therapy.

Phenotypic and genetic analyses of 111 clinical and environmental O1, O139, and non-O1/O139Vibrio choleraestrains from different geographical areas

2011 ◽  
Vol 140 (8) ◽  
pp. 1389-1399 ◽  
Author(s):  
R. E. SELLEK ◽  
M. NIEMCEWICZ ◽  
J. S. OLSEN ◽  
O. BASSY ◽  
P. LORENZO ◽  
...  
Keyword(s):  
Vibrio Cholerae ◽  
Antibiotic Susceptibility ◽  
Tandem Repeats ◽  
Virulence Genes ◽  
Biochemical Test ◽  
Genetic Analyses ◽  
Typing Methods ◽  
Combination Of Methods

SUMMARYA total of 111 clinical and environmental O1, O139 and non-O1/O139Vibrio choleraestrains isolated between 1978 and 2008 from different geographical areas were typed using a combination of methods: antibiotic susceptibility, biochemical test, serogroup, serotype, biotype, sequences containing variable numbers of tandem repeats (VNTRs) and virulence genesctxAandtcpAamplification. As a result of the performed typing work, the strains were organized into four clusters: cluster A1 included clinical O1 Ogawa and O139 serogroup strains (ctxA+andtcpA+); cluster A2 included clinical non-O1/O139 strains (ctxA−andtcpA−), as well as environmental O1 Inaba and non-O1/O139 strains (ctxA−andtcpA−/tcpA+); cluster B1 contained two clinical O1 strains and environmental non-O1/O139 strains (ctxA−andtcpA+/tcpA−); cluster B2 contained clinical O1 Inaba and Ogawa strains (ctxA+andtcpA+). The results of this work illustrate the advantage of combining several typing methods to discriminate between clinical and environmentalV. choleraestrains.

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