scholarly journals Fluorescent Arc/Arg3.1 indicator mice: A versatile tool to study brain activity changes in vitro and in vivo

2009 ◽  
Vol 184 (1) ◽  
pp. 25-36 ◽  
Author(s):  
Valery Grinevich ◽  
Alexander Kolleker ◽  
Marina Eliava ◽  
Naoki Takada ◽  
Hiroshi Takuma ◽  
...  
2018 ◽  
Author(s):  
Dayo O. Adewole ◽  
Laura A. Struzyna ◽  
James P. Harris ◽  
Ashley D. Nemes ◽  
Justin C. Burrell ◽  
...  

AbstractAchievements in intracortical neural interfaces are compromised by limitations in specificity and long-term performance. A biological intermediary between devices and the brain may offer improved specificity and longevity through natural synaptic integration with deep neural circuitry, while being accessible on the brain surface for optical read-out/control. Accordingly, we have developed the first “living electrodes” comprised of implantable axonal tracts protected within soft hydrogel cylinders for the biologically-mediated monitoring/modulation of brain activity. Here we demonstrate the controlled fabrication, rapid axonal outgrowth, reproducible cytoarchitecture, and simultaneous optical stimulation and recording of neuronal activity within these engineered constructs in vitro. We also present their transplantation, survival, integration, and optical recording in rat cortex in vivo as a proof-of-concept for this neural interface paradigm. The creation and functional validation of these preformed, axon-based “living electrodes” is a critical step towards developing a new class of biohybrid neural interfaces to probe and modulate native circuitry.


2019 ◽  
Author(s):  
Scott Rich ◽  
Homeira Moradi Chameh ◽  
Marjan Rafiee ◽  
Katie Ferguson ◽  
Frances K. Skinner ◽  
...  

AbstractA plethora of recent experimental literature implicates the abrupt, synchronous activation of GABAergic interneurons in driving the sudden change in brain activity that heralds seizure initiation. However, the mechanisms predisposing an inhibitory network toward sudden coherence specifically during ictogenesis remain unknown. We address this question by comparing simulated inhibitory networks containing control interneurons and networks containing hyper-excitable interneurons modeled to mimic treatment with 4-Aminopyridine (4-AP), an agent commonly used to model seizuresin vivoandin vitro. Ourin silicostudy demonstrates that model inhibitory networks with 4-AP interneurons are more prone than their control counterparts to exist in a bistable state in which asynchronously firing networks can abruptly transition into synchrony due to a brief perturbation. We further show that perturbations driving this transition could reasonably arisein vivobased on models of background excitatory synaptic activity in the cortex. Thus, these results propose a mechanism by which an inhibitory network can transition from incoherent to coherent dynamics in a fashion that may precipitate seizure as a downstream effect. Moreover, this mechanism specifically explains why inhibitory networks containing hyper-excitable interneurons are more vulnerable to this state change, and how such networks can undergo this transition without a permanent change in the drive to the system. This, in turn, potentially explains such networks’ increased vulnerability to seizure initiated by GABAergic activity.Author summaryFor decades, the study of epilepsy has focused on the hypothesis that over-excitation or dis-inhibition of pyramidal neurons underlies the transition from normal brain activity to seizure. However, a variety of recent experimental findings have implicated a sudden synchronous burst of activity amongst inhibitory interneurons in driving this transition. Given the counter-intuitive nature of these findings and the correspondingly novel hypothesis of seizure generation, the articulation of a feasible mechanism of action underlying this dynamic is of paramount importance for this theory’s viability. Here, we use computational techniques, particularly the concept of bistability in the context of dynamical systems, to propose a mechanism for the necessary first step in such a process: the sudden synchronization of a network of inhibitory interneurons. This is the first detailed proposal of a computational mechanism explaining any aspect of this hypothesis of which we are aware. By articulating a mechanism that not only underlies this transition, but does so in a fashion explaining why ictogenic networks might be more prone to this behavior, we provide critical support for this novel hypothesis of seizure generation and potential insight into the larger question of why individuals with epilepsy are particularly vulnerable to seizure.


2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Sarah Bricault ◽  
Ali Barandov ◽  
Peter Harvey ◽  
Elizabeth DeTienne ◽  
Aviad Hai ◽  
...  

AbstractTargeted manipulations of neural activity are essential approaches in neuroscience and neurology, but monitoring such procedures in the living brain remains a significant challenge. Here we introduce a paramagnetic analog of the drug muscimol that enables targeted neural inactivation to be performed with feedback from magnetic resonance imaging. We validate pharmacological properties of the compound in vitro, and show that its distribution in vivo reliably predicts perturbations to brain activity.


2013 ◽  
Vol 14 (3) ◽  
pp. 4580-4595 ◽  
Author(s):  
Daniele Tomassoni ◽  
Francesco Amenta ◽  
Consuelo Amantini ◽  
Valerio Farfariello ◽  
Lorenzo Di Cesare Mannelli ◽  
...  

2018 ◽  
Vol 1 (5) ◽  
pp. e201800148 ◽  
Author(s):  
Britta Seip ◽  
Guénaël Sacheau ◽  
Denis Dupuy ◽  
C Axel Innis

Although it is known that the amino acid sequence of a nascent polypeptide can impact its rate of translation, dedicated tools to systematically investigate this process are lacking. Here, we present high-throughput inverse toeprinting, a method to identify peptide-encoding transcripts that induce ribosomal stalling in vitro. Unlike ribosome profiling, inverse toeprinting protects the entire coding region upstream of a stalled ribosome, making it possible to work with random or focused transcript libraries that efficiently sample the sequence space. We used inverse toeprinting to characterize the stalling landscapes of free and drug-boundEscherichia coliribosomes, obtaining a comprehensive list of arrest motifs that were validated in vivo, along with a quantitative measure of their pause strength. Thanks to the modest sequencing depth and small amounts of material required, inverse toeprinting provides a highly scalable and versatile tool to study sequence-dependent translational processes.


Micromachines ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 192
Author(s):  
Hiep Xuan Cao ◽  
Daewon Jung ◽  
Han-Sol Lee ◽  
Gwangjun Go ◽  
Minghui Nan ◽  
...  

The ability to manipulate therapeutic agents in fluids is of interest to improve the efficiency of targeted drug delivery. Ultrasonic manipulation has great potential in the field of therapeutic applications as it can trap and manipulate micro-scale objects. Recently, several methods of ultrasonic manipulation have been studied through standing wave, traveling wave, and acoustic streaming. Among them, the traveling wave based ultrasonic manipulation is showing more advantage for in vivo environments. In this paper, we present a novel ultrasonic transducer (UT) array with a hemispherical arrangement that generates active traveling waves with phase modulation to manipulate a micromotor in water. The feasibility of the method could be demonstrated by in vitro and ex vivo experiments conducted using a UT array with 16 transducers operating at 1 MHz. The phase of each transducer was controlled independently for generating a twin trap and manipulation of a micromotor in 3D space. This study shows that the ultrasonic manipulation device using active traveling waves is a versatile tool that can be used for precise manipulation of a micromotor inserted in a human body and targeted for drug delivery.


2021 ◽  
Vol 7 (4) ◽  
pp. eaay5347
Author(s):  
Dayo O. Adewole ◽  
Laura A. Struzyna ◽  
Justin C. Burrell ◽  
James P. Harris ◽  
Ashley D. Nemes ◽  
...  

For implantable neural interfaces, functional/clinical outcomes are challenged by limitations in specificity and stability of inorganic microelectrodes. A biological intermediary between microelectrical devices and the brain may improve specificity and longevity through (i) natural synaptic integration with deep neural circuitry, (ii) accessibility on the brain surface, and (iii) optogenetic manipulation for targeted, light-based readout/control. Accordingly, we have developed implantable “living electrodes,” living cortical neurons, and axonal tracts protected within soft hydrogel cylinders, for optobiological monitoring/modulation of brain activity. Here, we demonstrate fabrication, rapid axonal outgrowth, reproducible cytoarchitecture, and simultaneous optical stimulation and recording of these tissue engineered constructs in vitro. We also present their transplantation, survival, integration, and optical recording in rat cortex as an in vivo proof of concept for this neural interface paradigm. The creation and characterization of these functional, optically controllable living electrodes are critical steps in developing a new class of optobiological tools for neural interfacing.


2021 ◽  
Author(s):  
Zhaofa Wu ◽  
Kaikai He ◽  
Yue Chen ◽  
Hongyu Li ◽  
Sunlei Pan ◽  
...  

SUMMARYThe purinergic transmitter ATP (adenosine 5’-triphosphate) plays an essential role in both the central and peripheral nervous systems, and the ability to directly measure extracellular ATP in real time will increase our understanding of its physiological functions. We developed an ultrasensitive GPCRActivation‒Based ATP sensor called GRABATP1.0, with a robust fluorescence response to extracellular ATP when expressed in several cell types. This sensor has sub-second kinetics, ATP affinity in the range of tens of nanomolar, and can be used to localize ATP release with subcellular resolution. Using this sensor, we monitored ATP release under a variety of in vitro and in vivo conditions, including primary hippocampal neurons, a zebrafish model of injury-induced ATP release, and LPS-induced ATP-release events in individual astrocytes in the mouse cortex measured using in vivo two-photon imaging. Thus, the GRABATP1.0 sensor is a sensitive, versatile tool for monitoring ATP release and dynamics under both physiological and pathophysiological conditions.


2020 ◽  
Author(s):  
Boubker Zaaimi ◽  
Mark Turnbull ◽  
Anupam Hazra ◽  
Yujiang Wang ◽  
Carolina Gandara de Souza ◽  
...  

Abstract Electrical neurostimulation is effective in treating neurological disorders, but associated recording artefacts generally limit applications to ‘open-loop’ stimuli. Since light does not prevent concurrent electrical recordings, optogenetics enables real-time, continuous ‘closed-loop’ control of brain activity. Here we show that closed-loop optogenetic stimulation with excitatory opsins (CLOSe) affords precise manipulation of neural dynamics, both in vitro, in brain slices from transgenic mice, and in vivo, with anesthetised monkeys. We demonstrate the generation of oscillations in quiescent tissue, enhancement or suppression of endogenous patterns in active tissue, and modulation of seizure-like bursts elicited by 4-aminopyridine. New network properties, emergent under CLOSe, depended on the phase-shift imposed between neural activity and optical stimulation, and could be modelled with a nonlinear dynamical system. In particular, CLOSe could stabilise or destabilise limit cycles associated with seizure oscillations, evident from systematic changes in the variability and entropy of seizure trajectories that correlated with their altered duration and intensity. Furthermore, CLOSe was achieved using intracortical optrodes incorporating light-emitting diodes, paving the way for translation of closed-loop optogenetics towards therapeutic applications in humans.


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