scholarly journals Composition and geographic variation of the bacterial microbiota associated with the coelomic fluid of the sea urchin Paracentrotus lividus

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Teresa Faddetta ◽  
Francesco Ardizzone ◽  
Francesca Faillaci ◽  
Chiara Reina ◽  
Emilia Palazzotto ◽  
...  
Keyword(s):  
Sea Urchin ◽  
Nature Reserve ◽  
Sea Urchins ◽  
Geographical Location ◽  
Paracentrotus Lividus ◽  
Coelomic Fluid ◽  
Rrna Gene ◽  
Sequencing Analysis ◽  
Bacterial Strains ◽  
Microbiota Structure

AbstractIn the present work, culture-based and culture-independent investigations were performed to determine the microbiota structure of the coelomic fluid of Mediterranean sea urchin Paracentrotus lividus individuals collected from two distinct geographical sites neighboring a high-density population bay and a nature reserve, respectively. Next Generation Sequencing analysis of 16S rRNA gene (rDNA) showed that members of the Proteobacteria, Bacteroidetes and Fusobacteria phyla, which have been previously reported to be commonly retrieved from marine invertebrates, dominate the overall population of microorganisms colonizing this liquid tissue, with minority bacterial genera exhibiting remarkable differences among individuals. Our results showed that there is a correlation between microbiota structure and geographical location of the echinoderm collection site, highlighting over-representation of metagenomic functions related to amino acid and bioactive peptides metabolism in specimens inhabiting the nature reserve. Finally, we also described the developmental delay and aberrations exhibited by sea urchin embryos exposed to distinct bacterial isolates, and showed that these defects rely upon hydrophilic compound(s) synthesized by the bacterial strains assayed. Altogether, our findings lay the groundwork to decipher the relationships of bacteria with sea urchins in their aquatic environment, also providing an additional layer of information to understand the biological roles of the coelomic fluid.

scholarly journals The Diverse Transformer (Trf) Protein Family in the Sea Urchin Paracentrotus lividus Acts through a Collaboration between Cellular and Humoral Immune Effector Arms

2021 ◽  
Vol 22 (13) ◽  
pp. 6639
Author(s):  
Iryna Yakovenko ◽  
Asaf Donnyo ◽  
Or Ioscovich ◽  
Benyamin Rosental ◽  
Matan Oren
Keyword(s):  
Sea Urchin ◽  
Marine Invertebrates ◽  
Sea Urchins ◽  
Paracentrotus Lividus ◽  
Protein Family ◽  
Coelomic Fluid ◽  
Immune Gene ◽  
Immune Effector ◽  
E Coli ◽  
Humoral Immune

Sea urchins are long-living marine invertebrates with a complex innate immune system, which includes expanded families of immune receptors. A central immune gene family in sea urchins encodes the Transformer (Trf) proteins. The Trf family has been studied mainly in the purple sea urchin Strongylocentrotus purpuratus. Here, we explore this protein family in the Mediterranean Sea urchin Paracentrotus lividus. The PlTrf genes and predicted proteins are highly diverse and show a typical Trf size range and structure. Coelomocytes and cell-free coelomic fluid from P. lividus contain different PlTrf protein repertoires with a shared subset, that bind specifically to E. coli. Using FACS, we identified five different P. lividus coelomocyte sub-populations with cell surface PlTrf protein expression. The relative abundance of the PlTrf-positive cells increases sharply following immune challenge with E. coli, but not following challenge with LPS or the sea urchin pathogen, Vibrio penaeicida. Phagocytosis of E. coli by P. lividus phagocytes is mediated through the cell-free coelomic fluid and is inhibited by blocking PlTrf activity with anti-SpTrf antibodies. Together, our results suggest a collaboration between cellular and humoral PlTrf-mediated effector arms in the P. lividus specific immune response to pathogens.

scholarly journals Antibiotic and metal resistance of cultivable bacteria in the Antarctic sea urchin

2016 ◽  
Vol 28 (4) ◽  
pp. 261-268 ◽  
Author(s):  
M. González-Aravena ◽  
R. Urtubia ◽  
K. Del Campo ◽  
P. Lavín ◽  
C.M.V.L. Wong ◽  
...  
Keyword(s):  
Heavy Metals ◽  
Antibiotic Resistance ◽  
Sea Urchin ◽  
Sea Urchins ◽  
Antibiotic Resistance Genes ◽  
Metal Resistance ◽  
Coelomic Fluid ◽  
Bacterial Strains ◽  
Cultivable Bacteria ◽  
The Antarctic

AbstractIn this paper we report the first characterization of cultivable bacteria obtained from the Antarctic sea urchinSterechinus neumayeri. The coelomic fluid was obtained from a pool of sea urchins which was plated onto different media to isolate the bacteria. A total of 42 isolates of psychrotrophic and aerobic γ-Proteobacteria (59.5%), Flavobacteria (33.3%) and Actinomycetes (7.2%) were isolated and sequenced. These bacteria were exposed to heavy metals and antibiotics, where 38 strains were analysed by the minimal inhibitory concentration method. Antibiotic resistance was detected in 44% of cultivable strains, and a further 13% presented co-resistance to antibiotics and heavy metals. The genera of bacteria that showed an increased resistance and co-resistance to metals and antibiotics wereFlavobacterium,PsychrobacterandPseudomonas. Additionally, 30.9% of isolated bacterial strains contained plasmids, which are probably related to resistance and co-resistance to metals. These results indicate that sea urchin-associated bacteria could be reservoirs for antibiotic resistance genes.

scholarly journals Presence and biodistribution of perfluorooctanoic acid (PFOA) in Paracentrotus lividus highlight its potential application for environmental biomonitoring

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Dario Savoca ◽  
Raffaella Melfi ◽  
Antonio Palumbo Piccionello ◽  
Salvatore Barreca ◽  
Silvestre Buscemi ◽  
...  
Keyword(s):  
Sea Urchin ◽  
Potential Application ◽  
Sea Urchins ◽  
Paracentrotus Lividus ◽  
Posidonia Oceanica ◽  
Polluted Site ◽  
Contaminated Sites ◽  
Coelomic Fluid ◽  
Pfoa Concentration

AbstractThe first determination of presence and biodistribution of PFOA in ninety specimens of sea urchin Paracentrotus lividus from two differently contaminated sites along Palermo’s coastline (Sicily) is reported. Analyses were performed on the sea urchins’ coelomic fluids, coelomocytes, gonads or mixed organs, as well as on seawater and Posidonia oceanica leaves samples from the collection sites. PFOA concentration ranged between 1 and 13 ng/L in seawater and between 0 and 794 ng/g in P. oceanica. The analyses carried out on individuals of P. lividus from the least polluted site (A) showed PFOA median values equal to 0 in all the matrices (coelomic fluid, coelomocytes and gonads). Conversely, individuals collected from the most polluted site (B) showed median PFOA concentrations of 21 ng/g in coelomic fluid, 153 ng/g in coelomocytes, and 195 ng/g in gonads. Calculated bioconcentration factors of log10BCF > 3.7 confirmed the very bioaccumulative nature of PFOA. Significant correlations were found between the PFOA concentration of the coelomic fluid versus the total PFOA concentration of the entire sea urchin. PERMANOVA (p = 0.001) end Welch's t-test (p < 0.001) analyses showed a difference between specimens collected from the two sites highlighting the potential application of P. lividus as sentinel species for PFOA biomonitoring.

scholarly journals Microbiome of Odontogenic Abscesses

2021 ◽  
Vol 9 (6) ◽  
pp. 1307
Author(s):  
Sebastian Böttger ◽  
Silke Zechel-Gran ◽  
Daniel Schmermund ◽  
Philipp Streckbein ◽  
Jan-Falco Wilbrand ◽  
...  
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Oral Microbiome ◽  
Minor Role ◽  
Rrna Gene ◽  
Sequencing Analysis ◽  
Bacterial Strains ◽  
16S Rrna Gene Analysis ◽  
Odontogenic Infections ◽  
Odontogenic Abscess

Severe odontogenic abscesses are regularly caused by bacteria of the physiological oral microbiome. However, the culture of these bacteria is often prone to errors and sometimes does not result in any bacterial growth. Furthermore, various authors found completely different bacterial spectra in odontogenic abscesses. Experimental 16S rRNA gene next-generation sequencing analysis was used to identify the microbiome of the saliva and the pus in patients with a severe odontogenic infection. The microbiome of the saliva and the pus was determined for 50 patients with a severe odontogenic abscess. Perimandibular and submandibular abscesses were the most commonly observed diseases at 15 (30%) patients each. Polymicrobial infections were observed in 48 (96%) cases, while the picture of a mono-infection only occurred twice (4%). On average, 31.44 (±12.09) bacterial genera were detected in the pus and 41.32 (±9.00) in the saliva. In most cases, a predominantly anaerobic bacterial spectrum was found in the pus, while saliva showed a similar oral microbiome to healthy individuals. In the majority of cases, odontogenic infections are polymicrobial. Our results indicate that these are mainly caused by anaerobic bacterial strains and that aerobic and facultative anaerobe bacteria seem to play a more minor role than previously described by other authors. The 16S rRNA gene analysis detects significantly more bacteria than conventional methods and molecular methods should therefore become a part of routine diagnostics in medical microbiology.

scholarly journals Contrasting recruitment seasonality of sea urchin species in Gran Canaria, Canary Islands (eastern Atlantic)

2014 ◽  
Vol 15 (3) ◽  
pp. 475 ◽  
Author(s):  
S. GARCIA-SANZ ◽  
P. G. NAVARRO ◽  
F. TUYA
Keyword(s):  
Community Structure ◽  
Seasonal Variation ◽  
Sea Urchin ◽  
Sea Urchins ◽  
Late Summer ◽  
Paracentrotus Lividus ◽  
Abundant Species ◽  
Late Winter ◽  
Gran Canaria ◽  
Arbacia Lixula

Despite sea-urchins can play an important role affecting the community structure of subtidal bottoms, factors controlling the dynamics of sea-urchin populations are still poorly understood. We assessed the seasonal variation in recruitment of three sea-urchin species (Diadema africanum, Paracentrotus lividus and Arbacia lixula) at Gran Canaria Island (eastern Atlantic) via monthly deployment of artificial collectors throughout an entire annual cycle on each of four adjacent habitat patches (seagrasses, sandy patches, ‘urchin-grazed’ barrens and macroalgal-dominated beds) within a shallow coastal landscape. Paracentrotus lividus and A. lixula had exclusively one main recruitment peak in late winter-spring. Diadema africanum recruitment was also seasonal, but recruits appeared in late summer-autumn, particularly on ‘urchin-grazed’ barrens with large abundances of adult conspecifics. In conclusion, this study has demonstrated non-overlapping seasonal recruitment patterns of the less abundant species (P. lividus and A. lixula) with the most conspicuous species (D. africanum) in the study area.

scholarly journals Diverse Transformers (Trf) Protein Family in the Sea Urchin Paracentrotus lividus Act through Collaboration between Cellular and Humoral Immune Effector Arms

2021 ◽  
Author(s):  
Iryna Yakovenko ◽  
Asaf Donnyo ◽  
Or Ioscovich ◽  
Benyamin Rosental ◽  
Matan Oren
Keyword(s):  
Sea Urchin ◽  
Sea Urchins ◽  
Paracentrotus Lividus ◽  
Protein Family ◽  
Immune Gene ◽  
Immune Effector ◽  
E Coli ◽  
Purple Sea Urchin ◽  
Humoral Immune ◽  
Extended Families

Sea urchins are long-living invertebrates with a complex immune system which includes extended families of immune receptors. A central immune gene family in the sea urchins encodes for the Transformer (Trf) proteins. The Trf family was so far studied mainly in the purple sea urchin Strongylocentrotus purpuratus. In this study, we explored this protein family in the Mediterranean Sea urchin Paracentrotus lividus. The PlTrf genes and predicted proteins were found to be highly diverse and showed a typical Trf size range and structure. We found that P. lividus coelomocytes and hemolymph contain different PlTrf protein repertoires with a shared subset which specifically bind E. coli bacteria. Using FACS, we identified five different P. lividus coelomocyte sub-populations with cell surface Trf protein expression. The relative abundance of the Trf-positive cells sharply increased following immune challenge with E. coli bacteria, but not following challenge with LPS or sea urchin pathogen V. penaeicida. Finally, we demonstrated that the phagocytosis of E. coli bacteria by P. lividus phagocytes is mediated through the hemolymph and is inhibited by blocking Trf activity with anti-Trf antibodies. Together, our results suggest collaboration between cellular and humoral Trf-mediated effector arms in the P. lividus specific immune response to pathogens.

scholarly journals Complex Mixture-Associated Hormesis and Toxicity: The Case of Leather Tanning Industry

Dose-Response ◽  
2008 ◽  
Vol 6 (4) ◽  
pp. dose-response.0 ◽  
Author(s):  
Giovanni Pagano ◽  
Giuseppe Castello ◽  
Marialuisa Gallo ◽  
Ilaria Borriello ◽  
Marco Guida
Keyword(s):  
Growth Inhibition ◽  
Sea Urchin ◽  
Sea Urchins ◽  
Complex Mixture ◽  
Algal Growth ◽  
Paracentrotus Lividus ◽  
Selenastrum Capricornutum ◽  
Tannery Effluent ◽  
Developmental Defects ◽  
Algal Growth Inhibition

A series of studies investigated the toxicities of tannery-derived complex mixtures, i.e. vegetable tannin (VT) from Acacia sp. or phenol-based synthetic tannin (ST), and wastewater from tannin-based vs. chromium-based tanneries. Toxicity was evaluated by multiple bioassays including developmental defects and loss of fertilization rate in sea urchin embryos and sperm ( Paracentrotus lividus and Sphaerechinus granularis), and algal growth inhibition ( Dunaliella tertiolecta and Selenastrum capricornutum). Both VT and ST water extracts resulted in hormetic effects at concentrations ranging 0.1 to 0.3%, and toxicity at levels ≥1%, both in sea urchin embryo and sperm, and in algal growth bioassays. When comparing tannin-based tannery wastewater (TTW) vs. chromium-based tannery effluent (CTE), a hormesis to toxicity trend was observed for TTW both in terms of developmental and fertilization toxicity in sea urchins, and in algal growth inhibition, with hormetic effects at 0.1 to 0.2% TTW, and toxicity at TTW levels ≥1%. Unlike TTW, CTE showed a monotonic toxicity increase from the lowest tested level (0.1%) and CTE toxicity at higher levels was significantly more severe than TTW-induced toxicity. The results support the view that leather production utilizing tannins might be regarded as a more environmentally friendly procedure than chromium-based tanning process.

scholarly journals The impact of ocean acidification and warming on the skeletal mechanical properties of the sea urchin Paracentrotus lividus from laboratory and field observations

2015 ◽  
Vol 73 (3) ◽  
pp. 727-738 ◽  
Author(s):  
Marie Collard ◽  
Samuel P. S. Rastrick ◽  
Piero Calosi ◽  
Yoann Demolder ◽  
Jean Dille ◽  
...  
Keyword(s):  
Mechanical Properties ◽  
Laboratory Experiment ◽  
Young’S Modulus ◽  
Sea Urchin ◽  
Sea Urchins ◽  
Young's Modulus ◽  
Paracentrotus Lividus ◽  
Low Ph ◽  
Fracture Force ◽  
The Impact

Abstract Increased atmospheric CO2 concentration is leading to changes in the carbonate chemistry and the temperature of the ocean. The impact of these processes on marine organisms will depend on their ability to cope with those changes, particularly the maintenance of calcium carbonate structures. Both a laboratory experiment (long-term exposure to decreased pH and increased temperature) and collections of individuals from natural environments characterized by low pH levels (individuals from intertidal pools and around a CO2 seep) were here coupled to comprehensively study the impact of near-future conditions of pH and temperature on the mechanical properties of the skeleton of the euechinoid sea urchin Paracentrotus lividus. To assess skeletal mechanical properties, we characterized the fracture force, Young's modulus, second moment of area, material nanohardness, and specific Young's modulus of sea urchin test plates. None of these parameters were significantly affected by low pH and/or increased temperature in the laboratory experiment and by low pH only in the individuals chronically exposed to lowered pH from the CO2 seeps. In tidal pools, the fracture force was higher and the Young's modulus lower in ambital plates of individuals from the rock pool characterized by the largest pH variations but also a dominance of calcifying algae, which might explain some of the variation. Thus, decreases of pH to levels expected for 2100 did not directly alter the mechanical properties of the test of P. lividus. Since the maintenance of test integrity is a question of survival for sea urchins and since weakened tests would increase the sea urchins' risk of predation, our findings indicate that the decreasing seawater pH and increasing seawater temperature expected for the end of the century should not represent an immediate threat to sea urchins vulnerability.

scholarly journals Green Extraction Strategies for Sea Urchin Waste Valorization

2021 ◽  
Vol 8 ◽  
Author(s):  
Stefania Marzorati ◽  
Giordana Martinelli ◽  
Michela Sugni ◽  
Luisella Verotta
Keyword(s):  
Fatty Acids ◽  
Sea Urchin ◽  
Sea Urchins ◽  
Food Resource ◽  
Paracentrotus Lividus ◽  
Added Value ◽  
Physical Parameters ◽  
Widespread Application ◽  
Green Extraction ◽  
Successive Extraction

Commonly known as “purple sea urchin,” Paracentrotus lividus occurs in the Mediterranean Sea and the eastern Atlantic Ocean. This species is a highly appreciated food resource and Italy is the main consumer among the European countries. Gonads are the edible part of the animal but they represent only a small fraction (10–30%) of the entire sea urchin mass, therefore, the majority ends up as waste. Recently, an innovative methodology was successfully developed to obtain high-value collagen from sea urchin by-products to be used for tissue engineering. However, tissues used for the collagen extraction are still a small portion of the sea urchin waste (&lt;20%) and the remaining part, mainly the carbonate-rich test and spines, are discarded. Residual cell tissues, tests, and spines contain polyunsaturated fatty acids, carotenoids, and a class of small polyphenols, called polyhydroxynaphthoquinones (PHNQ). PHNQ, due to their polyhydroxylated quinonoid nature, show remarkable pharmacologic effects, and have high economic significance and widespread application in several cosmetic and pharmaceuticals applications. A green extraction strategy aimed to obtain compounds of interest from the wastes of sea urchins was developed. The core strategy was the supercritical CO2 technique, characterized by low environmental impacts. Fatty acids and carotenoids were successfully and selectively extracted and identified depending on the physical parameters of the supercritical CO2 extraction. Finally, the exhausted powder was extracted by solvent-based procedures to yield PHNQ. The presence of Spinochrome A and Spinochrome B was confirmed and extracts were characterized by a remarkably high antioxidant activity, measured through the 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) assay. Overall, the selective and successive extraction methods were validated for the valorization of waste from sea urchins, demonstrating the feasibility of the techniques targeting added-value compounds.

scholarly journals Sibling Bald Sea Urchin Disease affecting the edible Paracentrotus lividus (Echinodermata: Echinoidea) in Sardinia, Italy

2019 ◽  
Author(s):  
Daniele Grech ◽  
Ivan Guala ◽  
Simone Farina
Keyword(s):  
Mediterranean Sea ◽  
Infection Rate ◽  
Sea Urchin ◽  
Environmental Changes ◽  
Sea Urchins ◽  
Paracentrotus Lividus ◽  
Pathogen Transmission ◽  
Microbiological Analysis ◽  
Genetic Population ◽  
Sampling Campaign

Different species of echinoids and bivalves are suffering infectious diseases as the effect of ocean warming. In Sardinia (Western Mediterranean Sea) the keystone sea urchin species Paracentrotus lividus (Lamarck 1816) is widely appreciated as edible resource. Recently, a number of individuals were found to be infected by a no specified bacterial morphologically matching to a “bald sea urchin disease” (Fig. 1). In February 2019, a sampling campaign took place in two locations in the West and East Coast, inside and in proximity of local Marine Protected Areas. Field samplings were approved by the Regione Autonoma Sardegna (Fishing License for scientific purposes n.310/AP SCIE/N.1 10/01/2019). Samplings were carried out at the end of February 2019, when water temperature was 13°C. For each sampled site we performed two replicates of fast 50 m belt transects to estimate the infection rate as the total individuals infected on the total counted. The estimated infection rate was around 5% in both of sampled locations. A higher level of preyed sea urchins was observed, compared to natural predatory level previously observed in all the surveyed sites. Moreover, an unusual amount of dead sea urchins has been observed stranded on the storm berm, neighbouring one of the sampled sites. Microbiological analysis puts in evidence bacterial infection as the potential causal agent that could be temperature-related. Previous mass mortalities of sea urchins due to this infection were reported in the northwestern Mediterranean Sea in the past, where populations of shallow waters sharply declined until 75% during the summer period. A number of papers argued global warming might be linked to the occurrence of catastrophic events in the Mediterranean Sea, which could alter the host/pathogen range and modify pathogen transmission rates. Thus, the spread of the infection could cause important consequences at genetic, population, community and ecosystem level. In the study area, it seems already evident how predatory pressure on populations sampled was increased probably due to the lowering of the natural defences of the sea urchin preys as consequence of the infection. Accordingly, the outbreak of this infection probably related with environmental changes could determine important effects on trophic interactions and generating unpredictable cascading effects. In this area, an increasing of the sea urchin disease and related mortality is expected in the next months with the temperature increasing. A long-term monitoring across the summer season will be crucial to understand the extent and magnitude of the phenomenon as its implications.

Sign in / Sign up

Export Citation Format

Share Document