scholarly journals Maternal exposures and the infant gut microbiome: a systematic review with meta-analysis

Gut Microbes ◽  
2021 ◽  
Vol 13 (1) ◽  
pp. 1-30
Author(s):  
Allison Grech ◽  
Clare E Collins ◽  
Andrew Holmes ◽  
Ravin Lal ◽  
Kerith Duncanson ◽  
...  
PLoS ONE ◽  
2022 ◽  
Vol 17 (1) ◽  
pp. e0262057
Author(s):  
Claire A. Woodall ◽  
Luke J. McGeoch ◽  
Alastair D. Hay ◽  
Ashley Hammond

Respiratory tract infections (RTIs) are extremely common and can cause gastrointestinal tract symptoms and changes to the gut microbiota, yet these effects are poorly understood. We conducted a systematic review to evaluate the reported evidence of gut microbiome alterations in patients with a RTI compared to healthy controls (PROSPERO: CRD42019138853). We systematically searched Medline, Embase, Web of Science, Cochrane and the Clinical Trial Database for studies published between January 2015 and June 2021. Studies were eligible for inclusion if they were human cohorts describing the gut microbiome in patients with an RTI compared to healthy controls and the infection was caused by a viral or bacterial pathogen. Dual data screening and extraction with narrative synthesis was performed. We identified 1,593 articles and assessed 11 full texts for inclusion. Included studies (some nested) reported gut microbiome changes in the context of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) (n = 5), influenza (H1N1 and H7N9) (n = 2), Tuberculosis (TB) (n = 4), Community-Acquired Pneumonia CAP (n = 2) and recurrent RTIs (rRTI) (n = 1) infections. We found studies of patients with an RTI compared to controls reported a decrease in gut microbiome diversity (Shannon) of 1.45 units (95% CI, 0.15–2.50 [p, <0.0001]) and a lower abundance of taxa (p, 0.0086). Meta-analysis of the Shannon value showed considerable heterogeneity between studies (I2, 94.42). Unbiased analysis displayed as a funnel plot revealed a depletion of Lachnospiraceae, Ruminococcaceae and Ruminococcus and enrichment of Enterococcus. There was an important absence in the lack of cohort studies reporting gut microbiome changes and high heterogeneity between studies may be explained by variations in microbiome methods and confounder effects. Further human cohort studies are needed to understand RTI-induced gut microbiome changes to better understand interplay between microbes and respiratory health.


2019 ◽  
Vol 8 (9) ◽  
pp. 1441 ◽  
Author(s):  
Malwina M. Naghibi ◽  
Richard Day ◽  
Samantha Stone ◽  
Ashton Harper

Migraine is a common and disabling neurological condition with a complex etiology. Recent advances in the understanding of the gut microbiome have shown the role of gut micro-organisms in disease outcomes for distant organs—including the brain. Interventions targeting the gut microbiome have been shown to be effective in multiple neurological diagnoses, but there is little research into the role of the microbiome in migraine. This systematic review seeks to assess the current research landscape of randomized placebo controlled trials utilizing probiotic interventions as migraine prophylaxis. Searches were conducted of scientific databases including PubMed, MEDLINE, and the Cochrane Library, following PRISMA guidelines. Of 68 screened studies, 2 were eligible for analysis. Due to methodological differences, meta-analysis was not possible. Qualitative comparison of the studies demonstrated a dichotomy of results—one trial reported no significant change in migraine frequency and intensity, while the second trial reported highly significant improvements. No clear ‘gold standard’ currently exists for microbiome research, let alone for migraine-related microbiome research. The heterogeneity of outcome measures used in the two trials included in this systematic review shows the need for a standardization of outcome measures, therefore a series of recommendations for future probiotic–migraine research are included.


Gut Microbes ◽  
2021 ◽  
Vol 13 (1) ◽  
pp. 1-18
Author(s):  
Lucy McDonnell ◽  
Alexander Gilkes ◽  
Mark Ashworth ◽  
Victoria Rowland ◽  
Timothy Hugh Harries ◽  
...  

Nutrients ◽  
2021 ◽  
Vol 14 (1) ◽  
pp. 12
Author(s):  
Mariona Pinart ◽  
Andreas Dötsch ◽  
Kristina Schlicht ◽  
Matthias Laudes ◽  
Jildau Bouwman ◽  
...  

Whether the gut microbiome in obesity is characterized by lower diversity and altered composition at the phylum or genus level may be more accurately investigated using high-throughput sequencing technologies. We conducted a systematic review in PubMed and Embase including 32 cross-sectional studies assessing the gut microbiome composition by high-throughput sequencing in obese and non-obese adults. A significantly lower alpha diversity (Shannon index) in obese versus non-obese adults was observed in nine out of 22 studies, and meta-analysis of seven studies revealed a non-significant mean difference (−0.06, 95% CI −0.24, 0.12, I2 = 81%). At the phylum level, significantly more Firmicutes and fewer Bacteroidetes in obese versus non-obese adults were observed in six out of seventeen, and in four out of eighteen studies, respectively. Meta-analyses of six studies revealed significantly higher Firmicutes (5.50, 95% 0.27, 10.73, I2 = 81%) and non-significantly lower Bacteroidetes (−4.79, 95% CI −10.77, 1.20, I2 = 86%). At the genus level, lower relative proportions of Bifidobacterium and Eggerthella and higher Acidaminococcus, Anaerococcus, Catenibacterium, Dialister, Dorea, Escherichia-Shigella, Eubacterium, Fusobacterium, Megasphera, Prevotella, Roseburia, Streptococcus, and Sutterella were found in obese versus non-obese adults. Although a proportion of studies found lower diversity and differences in gut microbiome composition in obese versus non-obese adults, the observed heterogeneity across studies precludes clear answers.


2020 ◽  
Vol 46 (Supplement_1) ◽  
pp. S298-S298
Author(s):  
Amedeo Minichino ◽  
Natascia Brondino ◽  
Marco Solmi ◽  
Cinzia Del Giovane ◽  
Christoph U Correll ◽  
...  

Abstract Background None of the currently available treatments are effective for negative symptoms of schizophrenia, which represent a long-lasting burden on sufferers, their families and on wider society. The gut-microbiota has been emerging as a putative novel target of intervention for negative symptoms of schizophrenia. This hypothesis has been welcomed with enthusiasm by the scientific community as showed by the growing number of commentaries and not-systematised reviews on the topic. To date, only few clinical trials tested the efficacy of interventions with the a-priori rationale of targeting the gut-microbiome in schizophrenia, with contrasting results. However, there is a number of trials that used compounds, such as antibiotics, antimicrobials, pre- and pro-biotics with a clear potential of modifying the gut-microbiome in patients. Interpreting and analysing data from these studies will help to shed light on the potential of the gut-microbiome as a therapeutic target in schizophrenia. Here we provide the first systematic review and meta-analysis on augmentation strategies targeting the gut-microbiome in schizophrenia. Methods Following PRISMA guidelines, we searched from inception to August 2019 all the randomised double-blind controlled trials of add-on antibiotics, antimicrobics, pre/probiotics, and fecal transplant in schizophrenia. Primary outcomes were negative symptoms at end of follow-up and acceptability of treatment. Data were independently extracted by multiple observers and a random-mixed model was used for the analysis. Heterogeneity was assessed with the I2 index. Sensitivity analyses tested the robustness of the results. Results We identified 28 placebo-controlled trials: 21 investigated antibiotics, 4 antimicrobials, 3 pre/probiotics, none faecal transplant. None of the investigated compounds were effective for treating negative symptoms of schizophrenia, with the exception of the antimicrobial Sodium benzoate. It was possible to perform individual meta-analyses on three compounds for the outcome negative symptoms: (i) D-Cycloserine vs placebo (10 studies, N=389; SMD, -0.15; 95% CI -0.39, 0.10; P=0.24; I2: 26.4%); (ii) Minocycline vs placebo (7 studies, N=713, SMD: -0.35; 95% CI -0.70, 0.00; P=0.05, I2:77.7%) (iii) Sodium benzoate vs placebo (2 studies, N=107, SMD, -0.83; 95%CI -1.12, -0.42; P&lt;0.001; I2:0%) Acceptability of interventions was similar to placebo. Qualitative and quantitative subgroup analyses suggested that baseline severity of negative symptoms and stage of illness have the potential to influence treatment outcomes. Discussion None of the available treatment with a putative action on the gut-microbiome are effective for the treatment of negative symptoms of schizophrenia, with limited evidence supporting the use of the antimicrobial Sodium benzoate. However, this latter finding is likely to be related to the central effect of the compound. The effect of some compounds might be beneficial if timing of intervention and clinical heterogeneity are taken into account. A more detailed characterisation of the gut microbiome and the pathophysiological path linking it with schizophrenia is needed before engaging in further trials


2021 ◽  
Vol 8 (1) ◽  
pp. e000601
Author(s):  
Chino Aneke-Nash ◽  
Garrett Yoon ◽  
Mengmeng Du ◽  
Peter Liang

Background and aimsColorectal cancer (CRC) is the third most common cancer for women and men and the second leading cause of cancer death in the USA. There is emerging evidence that the gut microbiome plays a role in CRC development, and antibiotics are one of the most common exposures that can alter the gut microbiome. We performed a systematic review and meta-analysis to characterise the association between antibiotic use and colorectal neoplasia.MethodsWe searched PubMed, EMBASE, and Web of Science for articles that examined the association between antibiotic exposure and colorectal neoplasia (cancer or adenoma) through 15 December 2019. A total of 6031 citations were identified and 6 papers were included in the final analysis. We assessed the association between the level of antibiotic use (defined as number of courses or duration of therapy) and colorectal neoplasia using a random effects model.ResultsSix studies provided 16 estimates of the association between level of antibiotic use and colorectal neoplasia. Individuals with the highest levels of antibiotic exposure had a 10% higher risk of colorectal neoplasia than those with the lowest exposure (effect size: 1.10, 95% CI 1.01 to 1.18). We found evidence of high heterogeneity (I2=79%, p=0.0001) but not of publication bias.ConclusionsHigher levels of antibiotic exposure is associated with an increased risk of colorectal neoplasia. Given the widespread use of antibiotics in childhood and early adulthood, additional research to further characterise this relationship is needed.


mBio ◽  
2021 ◽  
Vol 12 (6) ◽  
Author(s):  
Jonah Kupritz ◽  
Angelina Angelova ◽  
Thomas B. Nutman ◽  
Pedro H. Gazzinelli-Guimaraes

The gut microbiome has established importance in regulating many aspects of human health, including nutrition and immunity. While many internal and environmental factors are known to influence the microbiome, less is known about the effects of intestinal helminth parasites (worms), which together affect one-sixth of the world's population.


Genes ◽  
2018 ◽  
Vol 9 (3) ◽  
pp. 167 ◽  
Author(s):  
George John ◽  
Lin Wang ◽  
Julie Nanavati ◽  
Claire Twose ◽  
Rajdeep Singh ◽  
...  

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