scholarly journals Wildfires and mass effects of dispersal disrupt the local uniformity of type I songs of Hermit Warblers in California

The Auk ◽  
2020 ◽  
Vol 137 (3) ◽  
Author(s):  
Brett J Furnas ◽  
Russ H Landers ◽  
Rauri C K Bowie
Keyword(s):  
Fire History ◽  
Regional Scale ◽  
Species Traits ◽  
Local Scale ◽  
Breeding Habitat ◽  
Type I ◽  
Ecological Processes ◽  
Dominant Type ◽  
Mass Effects ◽  
Pattern Dynamics

Abstract Hermit Warblers (Setophaga occidentalis) sing a formulaic, type I song to attract mates, in contrast to a repertoire of more complex, type II songs to defend territories. A single, dominant type I song, or a low diversity of type I songs, often occur within a geographic area. We provide the first comprehensive description of Hermit Warbler type I song variants throughout California, USA. We recorded type I songs from 1,588 males across 101 study sites in the state from April through July 2009–2014. Using those locations and a pre-existing range map of the species, we created a maximum entropy-based breeding habitat suitability map and classified the songs into 35 variants using a typological rubric. We validated consistent classification of songs for 87.5% of the birds. We then modeled the effects of recent fire history at the local scale (10 yr, 315 km2), the amount of breeding habitat at the regional scale (8,000 km2), and the distance between territories to examine factors involved in song sameness at the local scale. We found that the probability of different birds singing the same form declined with the amount of local fire, regional habitat, and distance, and that these findings were robust to uncertainty in our song classification rubric. Using a longitudinal analysis including additional data from 10 study areas revisited in 2019, we showed that song structure within forms had drifted since our initial visits 5–10 yr earlier, and that the evenness (e.g., Simpson’s measure) of song forms increased at locations that had been burned by wildfire between visits. Taken together, the results suggest that wildfires and the mass effects of dispersal of birds singing rival song forms disrupt the uniformity of type I songs locally. The results demonstrate how species traits, such as birdsong, can be used to disentangle the ecological processes that regulate observed patterns in biodiversity. Further investigation is recommended to determine whether song pattern dynamics reflect underlying genetic differences and habitat specializations among subpopulations.

scholarly journals Soil Mycobiome Is Shaped by Vegetation and Microhabitats: A Regional-Scale Study in Southeastern Brazil

2021 ◽  
Vol 7 (8) ◽  
pp. 587
Author(s):  
Danielle Hamae Yamauchi ◽  
Hans Garcia Garces ◽  
Marcus de Melo Teixeira ◽  
Gabriel Fellipe Barros Rodrigues ◽  
Leila Sabrina Ullmann ◽  
...  
Keyword(s):  
Fungal Community ◽  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Deciduous Forest ◽  
Regional Scale ◽  
Southeastern Brazil ◽  
Transitional Region ◽  
Illumina Platform ◽  
Ecological Processes ◽  
Life On Earth

Soil is the principal habitat and reservoir of fungi that act on ecological processes vital for life on Earth. Understanding soil fungal community structures and the patterns of species distribution is crucial, considering climatic change and the increasing anthropic impacts affecting nature. We evaluated the soil fungal diversity in southeastern Brazil, in a transitional region that harbors patches of distinct biomes and ecoregions. The samples originated from eight habitats, namely: semi-deciduous forest, Brazilian savanna, pasture, coffee and sugarcane plantation, abandoned buildings, owls’ and armadillos’ burrows. Forty-four soil samples collected in two periods were evaluated by metagenomic approaches, focusing on the high-throughput DNA sequencing of the ITS2 rDNA region in the Illumina platform. Normalized difference vegetation index (NDVI) was used for vegetation cover analysis. NDVI values showed a linear relationship with both diversity and richness, reinforcing the importance of a healthy vegetation for the establishment of a diverse and complex fungal community. The owls’ burrows presented a peculiar fungal composition, including high rates of Onygenales, commonly associated with keratinous animal wastes, and Trichosporonales, a group of basidiomycetous yeasts. Levels of organic matter and copper influenced all guild communities analyzed, supporting them as important drivers in shaping the fungal communities’ structures.

scholarly journals Arthropod community structure in pastures of an island archipelago (Azores): looking for local–regional species richness patterns at fine-scales

2004 ◽  
Vol 94 (2) ◽  
pp. 111-121 ◽  
Author(s):  
P.A.V. Borges ◽  
V.K. Brown
Keyword(s):  
Species Richness ◽  
Regional Scale ◽  
Local Scale ◽  
Local Species Richness ◽  
Β Diversity ◽  
Arthropod Species ◽  
Α Diversity ◽  
Local Species ◽  
Richness Patterns

AbstractThe arthropod species richness of pastures in three Azorean islands was used to examine the relationship between local and regional species richness over two years. Two groups of arthropods, spiders and sucking insects, representing two functionally different but common groups of pasture invertebrates were investigated. The local–regional species richness relationship was assessed over relatively fine scales: quadrats (= local scale) and within pastures (= regional scale). Mean plot species richness was used as a measure of local species richness (= α diversity) and regional species richness was estimated at the pasture level (= γ diversity) with the ‘first-order-Jackknife’ estimator. Three related issues were addressed: (i) the role of estimated regional species richness and variables operating at the local scale (vegetation structure and diversity) in determining local species richness; (ii) quantification of the relative contributions of α and β diversity to regional diversity using additive partitioning; and (iii) the occurrence of consistent patterns in different years by analysing independently between-year data. Species assemblages of spiders were saturated at the local scale (similar local species richness and increasing β-diversity in richer regions) and were more dependent on vegetational structure than regional species richness. Sucking insect herbivores, by contrast, exhibited a linear relationship between local and regional species richness, consistent with the proportional sampling model. The patterns were consistent between years. These results imply that for spiders local processes are important, with assemblages in a particular patch being constrained by habitat structure. In contrast, for sucking insects, local processes may be insignificant in structuring communities.

Conspecific attraction for conservation and management of terrestrial breeding birds: Current knowledge and future research directions

The Condor ◽  
2021 ◽  
Author(s):  
Jonathon J Valente ◽  
Christa L LeGrande-Rolls ◽  
James W Rivers ◽  
Anna M Tucker ◽  
Richard A Fischer ◽  
...  
Keyword(s):  
Current Knowledge ◽  
Site Occupancy ◽  
Species Traits ◽  
Positive Influence ◽  
Social Cues ◽  
Breeding Habitat ◽  
Future Research ◽  
Conspecific Attraction ◽  
Conservation Concern ◽  
And Control

Abstract Conspecific presence can indicate the location or quality of resources, and animals settling near conspecifics often gain fitness benefits. This can result in adaptive conspecific attraction during breeding habitat selection as demonstrated in numerous terrestrial, territorial birds. There is growing interest in using simulated conspecific social cues (e.g., decoys, broadcasted vocalizations) to manage bird distributions, yet it remains unclear when this approach is likely to succeed. We reviewed published studies to evaluate whether the strength of conspecific attraction in terrestrial birds is mediated by characteristics of species (life history traits), simulated cues (e.g., timing and duration), sites (e.g., quality), and how conspecific attraction was measured. We identified 31 experiments that simulated social cues and compared conspecific settlement between treatment and control sites. We then used phylogenetically controlled meta-regression to assess the impacts of 19 moderators on settlement. Nearly all species included in these experiments were migratory passerines, and social cues generally had a strong, positive influence on their settlement decisions, as the odds of site occupancy were 3.12× (95% CI: 0.81–11.69) greater in treatment sites relative to control sites. Within this group, conspecific attraction was evolutionarily conserved with ≥25.5% (95% CI: 5.1%–65.4%) of the variance in treatment effects explained by phylogenetic relatedness. However, we found no evidence that any covariates influenced the response to social cues, and we posit this stems from limited research specifically designed to identify the mechanisms mediating conspecific attraction. We therefore developed a research agenda that provides a framework for testing mechanistic hypotheses regarding how cue characteristics, species traits, and spatial contexts may mediate attraction to conspecifics. Evaluating these hypotheses will greatly advance the field by helping managers understand when, where, and why simulating social cues can be used to enhance populations of species that are of conservation concern.

scholarly journals Climate changes in mangrove forests and salt marshes

2016 ◽  
Vol 64 (spe2) ◽  
pp. 37-52 ◽  
Author(s):  
Yara Schaeffer-Novelli ◽  
Eduardo Juan Soriano-Sierra ◽  
Claudia Câmara do Vale ◽  
Elaine Bernini ◽  
André Scarlate Rovai ◽  
...  
Keyword(s):  
Salt Marsh ◽  
Early Warning ◽  
Salt Marshes ◽  
Regional Scale ◽  
Level Energy ◽  
Mangrove Forests ◽  
Coastal Zones ◽  
Coastal Habitat ◽  
Ecological Processes ◽  
Salt Marsh Species

Abstract This synthesis is framed within the scope of the Brazilian Benthic Coastal Habitat Monitoring Network (ReBentos WG 4: Mangroves and Salt Marshes), focusing on papers that examine biodiversity-climate interactions as well as human-induced factors including those that decrease systemic resilience. The goal is to assess difficulties related to the detection of climate and early warning signals from monitoring data. We also explored ways to circumvent some of the obstacles identified. Exposure and sensitivity of mangrove and salt marsh species and ecosystems make them extremely vulnerable to environmental impacts and potential indicators of sea level and climate-driven environmental change. However, the interpretation of shifts in mangroves and salt marsh species and systemic attributes must be scrutinized considering local and setting-level energy signature changes; including disturbance regime and local stressors, since these vary widely on a regional scale. The potential for adaptation and survival in response to climate change depends, in addition to the inherent properties of species, on contextual processes at the local, landscape, and regional levels that support resilience. Regardless of stressor type, because of the convergence of social and ecological processes, coastal zones should be targeted for anticipatory action to reduce risks and to integrate these ecosystems into adaptation strategies. Management must be grounded on proactive mitigation and collaborative action based on long-term ecosystem-based studies and well-designed monitoring programs that can 1) provide real-time early warning and 2) close the gap between simple correlations that provide weak inferences and process-based approaches that can yield increasingly reliable attribution and improved levels of anticipation.

Bedrock, foothills and kinship: reconstructing the funerary landscape of Eastern Sudan

2021 ◽  
Author(s):  
Stefano Costanzo ◽  
Filippo Brandolini ◽  
Habab Idriss Ahmed ◽  
Andrea Zerboni ◽  
Andrea Manzo
Keyword(s):  
Regional Scale ◽  
Local Scale ◽  
Point Pattern Analysis ◽  
Environmental Drivers ◽  
Point Pattern ◽  
Funerary Monuments ◽  
Funerary Architecture ◽  
The Creation ◽  
Cattle Breeders ◽  
Eastern Sudan

<p>Monumental funerary landscapes are paramount representations of the relationship between environment and superstructural human behavior. Their formation sometimes requires millennia and they cover wide territories, often adding up to complex palimpsests of monuments belonging to different time periods. In this regard, the funerary landscape of the semi-arid foothill region of Kassala (Eastern Sudan) represents a solid example. Therein, a comprehensive geoarchaeological investigation conducted by means of field survey and remote sensing allowed the creation of a regional geomorphological base-map and a dataset of funerary monuments. The latter comprises several thousand raised stone-built tombs spanning from the early first millennium AD clusters of tumuli (belonging to the pan-African traditions) to regionally exclusive variants of medieval Islamic funerary architecture (<em>qubbas</em>). Funerary monuments are found as eye-catching scatters of hundreds of elements along the foothills of the many rocky outcrops dotting the pediplain of the western periphery of the Eritrean Highlands. In this study, the two categories of monuments were not considered as separate <em>burialscapes</em>, but rather examined as a unique, diachronic funerary landscape in its relationship with the geological and geomorphological settings and constraints. Point Pattern Analysis (PPA) was employed to determine the main environmental drivers of their locations on a regional scale, as well as to assess the existence of superstructural factors acting on their aggregation at the local scale. Our results strongly suggest the presence of a geological/environmental/societal synthesis underlying the choice of monuments’ location: at the regional scale, the pattern follows a precise set of rules residing in the concomitant presence of stable, gently rolling slopes and available metamorphic rock slabs; at the local scale, the clustering is heavily conditioned by superstructural dynamics that most likely reside in kinship and collective social memory of local Beja people. We suggest that the creation of the funerary landscape of Eastern Sudan is the result of a repeated and well coded social behavior of the Beja people, semi-nomadic cattle breeders known to have inhabited the region since “time immemorial”. Despite their mobile lifestyle and cultural contact with other North African and Arabic cultures, the monumental palimpsest portrays how the funerary habits of this millennia-old society persisted almost undisturbed, valuing location and kinship over external influences.</p>

Serpentine Plant Assemblages: A Global Overview

2007 ◽  
Author(s):  
Earl B. Alexander ◽  
Roger G. Coleman ◽  
Todd Keeler-Wolfe ◽  
Susan P. Harrison
Keyword(s):  
Fire History ◽  
New Caledonia ◽  
Physical Factors ◽  
Ecological Processes ◽  
Global Trends ◽  
The World ◽  
Serpentine Vegetation ◽  
Global Patterns ◽  
Plant Assemblages ◽  
Local Levels

Serpentine substrates are found in many parts of the world, but there is considerable variation in the structure, composition, and diversity of the flora they support. To place western North America in a worldwide context, this chapter provides a brief sketch of global patterns in serpentine plant life, drawing on the reviews by Brooks (1987), Baker et al. (1992), and Roberts and Proctor (1992), as well as other sources. Following this is an overview of some of the main physical factors known to cause variation in the vegetation on serpentine both at the regional and local levels. Finally, we discuss what is known about the roles of competition, fire, herbivory, and other ecological processes in shaping plant assemblages on serpentine. The availability of botanical information varies considerably around the world. In most countries where serpentine occurs, it is possible to name at least some of the plant species and vegetation types found on it. But in countries where surveys are incomplete, or where information has not been synthesized at a national or larger level, it is generally not possible to estimate the number of serpentine-endemic taxa or to describe patterns of variation within the serpentine vegetation. Indonesia, Malaysia, the Phillippines, and Brazil are particularly notable as countries with serpentine floras that are potentially rich but in need of more study. With this caveat, however, some of the major global trends can be described based on available knowledge. Flora and vegetation of selected parts of the world are summarized in table 10-1, and global contrasts between the vegetation of serpentine and other soils are summarized in table 10-2. New Caledonia and Cuba lead the world in known serpentine endemic diversity with 900+ species each, >90% of which are also endemics to these islands. Depending on elevation, rainfall, and fire history, the serpentine vegetation on both islands varies from sclerophyllous scrubland that contrasts visibly with the neighboring vegetation, to medium-stature rainforest that is not strikingly different in appearance from the vegetation growing in other soils.

Introduction

2004 ◽  
Author(s):  
Vance T. Holliday
Keyword(s):  
Human Activity ◽  
Cultural Landscapes ◽  
Regional Scale ◽  
Site Formation ◽  
Site Formation Processes ◽  
Active Components ◽  
Ecological Processes ◽  
The Earth ◽  
Integral Component ◽  
Archaeological Materials

Soils are a potential source of much information in archaeological studies on site and feature-specific scales as well as on a regional scale. Soils are a part of the stage on which humans have evolved. As an integral component of most natural landscapes, soils also are an integral component of cultural landscapes. “Soils are active components of functioning ecosystems that reflect the spatial variability of ecological processes and at the same time have varying degrees of suitability for different kinds of human behavior” (Warren, 1982b, p. 47). Beyond physically supporting humans and their endeavors, however, soils are indicators of the nature and history of the physical and human landscape; they record the impact of human activity, they are a source of food and fuel, and they reflect the environment and record the passage of time. Soils also affect the nature of the cultural record left to archaeologists. They are a reservoir for artifacts and other traces of human activity, encasing archaeological materials and archaeological sites. Soil-forming processes also are an important component of site formation processes. Pedogenesis influences which artifacts, features, and environmental indicators (floral, faunal, and geological) are destroyed, which are preserved, and the degree of preservation. Those involved in field archaeology (as archaeologists, geoscientists, or bioscientists) routinely deal with soils—probably more so than most soil scientists or geologists (Birkeland, 1994, p. 143). However, what the soils or a soil scientist can tell archaeologists about the site and about the archaeological record is not always clear. In part, the integration of soil science in archaeology has been hampered by ambiguities in use of the term “soil” and confusion over what a soil is or is not. The bigger issue is that pedological research, particularly in the United States, has not traditionally been a component of geoarchaeology (the application of the earth science in archaeology) until recent years, in comparison with applications of other aspects of geoscience such as stratigraphy, sedimentology, or geomorphology. This situation evolved in large part because the academic study of soils typically is located in the agricultural sciences rather than the earth sciences.

Study of Potential Climate for Sugarcane Production in the State of Rio Grande Do Sul, Brazil, By Means of Geoprocessing

2011 ◽  
pp. 96-106
Author(s):  
Fernando Soares ◽  
José Alba ◽  
Elódio Sebem ◽  
Marcos Wrege
Keyword(s):  
Spatial Analysis ◽  
Spatial Data ◽  
Regional Scale ◽  
Rio Grande ◽  
Local Scale ◽  
The State ◽  
Rio Grande Do Sul ◽  
Gis Technology ◽  
Physiological Maturity ◽  
Climate Study

A potential climate study for sugarcane of a sector of Rio Grande do Sul State, Brazil is presented here. GIS technology was applied for evaluation of the risk of frost and for integration of spatial data. The problem was focused in regional scale and in local scale (Municipality of Jaguari). Results showed that cultivation can be programmed in order to obtain physiological maturity before the period of risk of frost, thus avoiding low production. Spatial analysis of the information allows rapid perspective for productivity of sugarcane in a specific territory. The Municipality of Jaguari has large potential for cultivation of sugarcane because of the absence of the risk of frost. Its productivity allows for expansion into suitable neighboring areas. Also, geoprocessing combined with the study of climate and soil appears as a significant tool for interpreting the areas with aptitude for production of sugarcane or for the industry of sugar and alcohol.

scholarly journals Use of Cap Analysis Gene Expression to detect human papillomavirus promoter activity patterns at different disease stages

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Ayumi Taguchi ◽  
Kazunori Nagasaka ◽  
Charles Plessy ◽  
Hiroe Nakamura ◽  
Yoshiko Kawata ◽  
...  
Keyword(s):  
Gene Expression ◽  
Human Papillomavirus ◽  
Promoter Activity ◽  
Clinical Samples ◽  
Viral Gene ◽  
Type B ◽  
Dominant Type ◽  
Pattern Dynamics ◽  
Hpv Types ◽  
Cap Analysis

Abstract Transcription of human papillomavirus (HPV) genes proceeds unidirectionally from multiple promoters. Direct profiling of transcription start sites (TSSs) by Cap Analysis Gene Expression (CAGE) is a powerful strategy for examining individual HPV promoter activity. The objective of this study was to evaluate alterations of viral promoter activity during infection using CAGE technology. We used CAGE-based sequencing of 46 primary cervical samples, and quantitatively evaluated TSS patterns in the HPV transcriptome at a single-nucleotide resolution. TSS patterns were classified into two types: early promoter-dominant type (Type A) and late promoter-dominant type (Type B). The Type B pattern was more frequently found in CIN1 and CIN2 lesions than in CIN3 and cancer samples. We detected transcriptomes from multiple HPV types in five samples. Interestingly, in each sample, the TSS patterns of both HPV types were the same. The viral gene expression pattern was determined by the differentiation status of the epithelial cells, regardless of HPV type. We performed unbiased analyses of TSSs across the HPV genome in clinical samples. Visualising TSS pattern dynamics, including TSS shifts, provides new insights into how HPV infection status relates to disease state.

scholarly journals Local-scale Arctic tundra heterogeneity affects regional-scale carbon dynamics

2020 ◽  
Vol 11 (1) ◽  
Author(s):  
M. J. Lara ◽  
A. D. McGuire ◽  
E. S. Euskirchen ◽  
H. Genet ◽  
S. Yi ◽  
...  
Keyword(s):  
Spatial Scale ◽  
Spatial Scales ◽  
Regional Scale ◽  
Hierarchical Cluster ◽  
Carbon Dynamics ◽  
Local Scale ◽  
Reduced Representation ◽  
Soil Carbon Dynamics ◽  
Biogeochemical Models ◽  
Northern Alaska

Abstract In northern Alaska nearly 65% of the terrestrial surface is composed of polygonal ground, where geomorphic tundra landforms disproportionately influence carbon and nutrient cycling over fine spatial scales. Process-based biogeochemical models used for local to Pan-Arctic projections of ecological responses to climate change typically operate at coarse-scales (1km2–0.5°) at which fine-scale (<1km2) tundra heterogeneity is often aggregated to the dominant land cover unit. Here, we evaluate the importance of tundra heterogeneity for representing soil carbon dynamics at fine to coarse spatial scales. We leveraged the legacy of data collected near Utqiaġvik, Alaska between 1973 and 2016 for model initiation, parameterization, and validation. Simulation uncertainty increased with a reduced representation of tundra heterogeneity and coarsening of spatial scale. Hierarchical cluster analysis of an ensemble of 21st-century simulations reveals that a minimum of two tundra landforms (dry and wet) and a maximum of 4km2 spatial scale is necessary for minimizing uncertainties (<10%) in regional to Pan-Arctic modeling applications.

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