Individual and Combined Effects of 2'Fucosyllactose and Bifidobacterium longum subsp. infantis on the Gut Microbiota Composition of Piglets

Abstract Objectives Human milk is a source of oligosaccharides that promote the growth of beneficial bacteria. Bifidobacterium longum subsp. infantis, a dominant species in breastfed infants, has the capacity to utilize milk oligosaccharides. Herein, the effects of 2'fucosyllactose (2'FL), B. infantis Bi-26 (Bi-26), and a combination thereof on piglet gut microbiota composition and volatile fatty acid (VFA) concentrations were assessed. Methods Fifty-two intact male pigs were provided ad libitum access to a nutritionally-adequate milk replacer without (CON) or with 1.0 g/L 2’FL (FL) from postnatal day 2 to 34/35. Pigs were further stratified to receive either 12% glycerol or Bi-26 in glycerol orally, 109 colony-forming unit/day (BI and FLBI). Ascending colon (AC) and rectal contents were collected. Gut microbiota profiles were assessed by 16S rRNA gene sequencing and real-time PCR and VFA were determined by gas chromatography. Results Neither 2'FL nor Bi-26 affected the overall microbiota composition (P > 0. 05); however, alpha diversity and the relative abundances of bacterial genera were influenced by the treatments. Shannon indices were lower in AC of piglets fed Bi-26 (P = 0.048). Proportions of Clostridia UCG-014, Lachnoclostridium, Christensenellaceae R-7 group and Anaerovoracaceae family XIII AD3011 group were lower, while Faecalibacterium was higher in AC of piglets receiving 2'FL (P < 0.05). Bi-26 decreased (P < 0.05) colonic abundances of Parabacteroides, Fusobacterium, Butyricimonas and uncultured Prevotellaceae. In rectal contents,7 bacterial genera were impacted by 2'FL and 3 by Bi-26 (P < 0.05). Interactive effects were observed for several bacterial genera and acetate concentrations (P < 0.05). In AC, Lachnospiraceae CAG-56 was higher in CON than all other groups and Allisonella was lower in BI piglets vs. CON. Rectal contents Bacteroides was higher in BI piglets than CON. Compared to CON, acetate concentrations were higher in AC of FL piglets (P < 0.05). Conclusions 2'FL and Bi-26 supplemented to milk replacer exerted individual and synbiotic influences on gut bacterial composition, and 2'FL alone increased specific VFA concentration, demonstrating its prebiotic potential. Funding Sources DuPont Nutrition and Biosciences.

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IgA-deficient humans exhibit gut microbiota dysbiosis despite secretion of compensatory IgM

Scientific Reports ◽

10.1038/s41598-019-49923-2 ◽

2019 ◽

Vol 9 (1) ◽

Cited By ~ 24

Author(s):

Jason R. Catanzaro ◽

Juliet D. Strauss ◽

Agata Bielecka ◽

Anthony F. Porto ◽

Francis M. Lobo ◽

...

Keyword(s):

Gut Microbiota ◽

16S Rrna Gene Sequencing ◽

Iga Deficiency ◽

Secretory Iga ◽

Rrna Gene ◽

Healthy Controls ◽

Microbiota Composition ◽

Antibody Isotype ◽

Selective Iga Deficiency ◽

Gut Microbiota Composition

Abstract Immunoglobulin A is the dominant antibody isotype found in mucosal secretions and enforces host-microbiota symbiosis in mice, yet selective IgA-deficiency (sIgAd) in humans is often described as asymptomatic. Here, we determined the effects of IgA deficiency on human gut microbiota composition and evaluated the possibility that mucosal secretion of IgM can compensate for a lack of secretory IgA. We used 16S rRNA gene sequencing and bacterial cell sorting to evaluate gut microbiota composition and taxa-specific antibody coating of the gut microbiota in 15 sIgAd subjects and matched controls. Despite the secretion of compensatory IgM into the gut lumen, sIgAd subjects displayed an altered gut microbiota composition as compared to healthy controls. These alterations were characterized by a trend towards decreased overall microbial diversity as well as significant shifts in the relative abundances of specific microbial taxa. While secretory IgA in healthy controls targeted a defined subset of the microbiota via high-level coating, compensatory IgM in sIgAd subjects showed less specificity than IgA and bound a broader subset of the microbiota. We conclude that IgA plays a critical and non-redundant role in controlling gut microbiota composition in humans and that secretory IgA has evolved to maintain a diverse and stable gut microbial community.

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Osteopontin-Enriched Algae Modulates the Gut Microbiota Composition in Weaning Piglets Infected with Enterotoxigenic Escherichia Coli (P06-069-19)

Current Developments in Nutrition ◽

10.1093/cdn/nzz031.p06-069-19 ◽

2019 ◽

Vol 3 (Supplement_1) ◽

Cited By ~ 1

Author(s):

Mei Wang ◽

Brooke Smith ◽

Brock Adams ◽

Miller Tran ◽

Ryan Dilger ◽

...

Keyword(s):

Escherichia Coli ◽

Gut Microbiota ◽

Alpha Diversity ◽

Enterotoxigenic Escherichia Coli ◽

Farm Animals ◽

Future Research ◽

Rrna Gene ◽

Microbiota Composition ◽

Wild Type ◽

Gut Microbiota Composition

Abstract Objectives Enterotoxigenic Escherichia coli (ETEC) are an important cause of diarrhea in human infants and young farm animals. Osteopontin (OPN), a glycoprotein present in high concentration in human milk, has immunomodulatory functions, which could indirectly impact the microbiota. Furthermore, a previous study has shown fecal microbiota composition differs between wild-type and OPN knockout mice. Herein, the effects of OPN-enriched algae on the gut microbiota composition and volatile fatty acid (VFA) concentrations of ETEC-infected piglets were assessed. Methods Naturally-farrowed piglets were sow-reared for 21 days and then randomized to two weaning diets: WT (formula + 1% wild-type algae) or OPN (formula + 1% OPN-enriched algae). On postnatal day (PND) 31, all piglets were infected orally with a live culture of ETEC (1010 colony-forming unit/3 mL dose) daily for three consecutive days. On PND 41, ascending colon (AC) contents were collected. Gut microbiota was assessed by sequencing V3-V4 regions of 16S rRNA gene and VFAs were determined by gas chromatography. Alpha-diversity and VFAs were analyzed using PROC MIXED procedure of SAS. Beta-diversity was evaluated by permutational multivariate analysis of variance (PERMANOVA) and differential abundance analysis on the bacterial genera was performed using DESeq2 package of R. Results Shannon indices were lower in the AC contents of OPN piglets compared to WT piglets. The overall colonic microbiota of OPN piglets differed from that of WT piglets (PERMANOVA P = 0.015). At genus level, OPN-enriched algae increased the abundance of Streptococcus, decreased the abundances of Sutterella, Candidatus Soleaferrea, dga-11 gut group, Rikenellaceae RC9 gut group, Ruminococcaceae UCG-010, unculturedRuminococcaceae, Prevotella 2 and 7 compared to piglets consuming wild-type algae (P < 0. 05). OPN piglets also had higher (P < 0.05) concentrations of acetate, propionate, butyrate and valerate compared to WT. Conclusions In ETEC infected piglets, 1% OPN-enriched algae decreased alpha-diversity and modulated the microbiota composition and VFA profiles compared to 1% WT algae. Other studies have shown that OPN inhibits biofilm formation in vitro, but future research is needed to assess in vivo microbiome-modulation mechanisms. Funding Sources Triton Algae Innovations.

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Gut Microbiota Composition and Metabolomic Profiles of Wild and Captive Chinese Monals (Lophophorus lhuysii)

10.21203/rs.3.rs-32587/v2 ◽

2020 ◽

Author(s):

Dandan Jiang ◽

Xin He ◽

Marc Valitutto ◽

Li Chen ◽

Qin Xu ◽

...

Keyword(s):

Gut Microbiota ◽

High Performance ◽

Bird Species ◽

Alpha Diversity ◽

Integrated Approach ◽

Fecal Microbiota ◽

Rrna Gene ◽

Microbiota Composition ◽

Metabolomic Profile ◽

Gut Microbiota Composition

Abstract Background：The Chinese monal (Lophophorus lhuysii) is an endangered bird species, with a wild population restricted to the mountains of southwest China, and only one known captive population in the world. We investigated the fecal microbiota and metabolome of wild and captive Chinese monals to explore differences and similarities in nutritional status and digestive characteristics. An integrated approach combining 16S ribosomal RNA (16S rRNA) gene sequencing and ultra-high performance liquid chromatography (UHPLC) based metabolomics were used to examine the fecal microbiota composition and the metabolomic profile of Chinese monals. Results: The results showed that the alpha diversity of gut microbes in the wild group were significantly higher than that in the captive group and the core bacterial taxa in the two groups showed remarkable differences at phylum, class, order, and family levels. Metabolomic profiling also revealed differences, mainly related to galactose, starch and sucrose metabolism, fatty acid, bile acid biosynthesis and bile secretion. Furthermore, strong correlations of metabolite types and bacterial genus were detected. Conclusions: There were remarkable differences in the gut microbiota composition and metabolomic profile between wild and captive Chinese monals. This study has established a baseline for a normal gut microbiota and metabolomic profile for wild Chinese monals, thus allowing us to evaluate if differences seen in captive organisms have an impact on their overall health and reproduction.

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Effects of 12 weeks of resistance training on gut microbiota composition of rats

Journal of Experimental Biology ◽

10.1242/jeb.242543 ◽

2021 ◽

Author(s):

Alinne P. Castro ◽

Keemilyn K. S. Silva ◽

Claudia S. A. Medeiros ◽

Fernanda Alves ◽

Ronaldo C. Araujo ◽

...

Keyword(s):

Body Weight ◽

Resistance Training ◽

Gut Microbiota ◽

16S Rrna Gene Sequencing ◽

Tolerance Test ◽

Rrna Gene ◽

Microbiota Composition ◽

Lower Body Weight ◽

Rrna Gene Sequencing ◽

Gut Microbiota Composition

In addition to its health benefits, exercise training has been pointed out as modulator of the gut microbiota. However, the effects of resistance training (RT) on gut microbiota composition remain unknown. Wistar rats underwent 12 weeks of RT. Body weight, glucose tolerance test, visceral body fat, triglyceride concentration, and food consumption were evaluated. The gut microbiota was analyzed by 16S rRNA gene sequencing. Rats that underwent RT showed lower body weight (p=0.0005), lower fat content (p=0.02), and better glucose kinetics (p=0.047) when compared to the control. Improvements in the diversity and composition of the gut microbiota were identified in the RT group. The relative abundance of Pseudomonas, Serratia, and Comamonas decreased significantly after 12 weeks of RT (p<0.001). These results suggest that RT has the potential to enhance the diversity of the gut microbiota and improve its biological functions.

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Gut Microbiota Composition across Normal Range Prostate-Specific Antigen Levels

Journal of Personalized Medicine ◽

10.3390/jpm11121381 ◽

2021 ◽

Vol 11 (12) ◽

pp. 1381

Author(s):

Han-Na Kim ◽

Jae-Heon Kim ◽

Yoosoo Chang ◽

Dongmin Yang ◽

Hyung-Lae Kim ◽

...

Keyword(s):

Gut Microbiota ◽

Prostate Specific Antigen ◽

Specific Antigen ◽

16S Rrna Gene Sequencing ◽

Rrna Gene ◽

Microbiota Composition ◽

Sequencing Data ◽

Normal Range ◽

Cross Sectional ◽

Gut Microbiota Composition

Animal studies have shown the interaction between androgens and the gut microbiome directly and indirectly; however, limited evidence from human studies is available. To evaluate the association between prostate-specific antigen (PSA) levels within the normal range, reflective of androgen receptor activity, and the gut microbiota composition, a cross-sectional analysis was performed in 759 Korean men aged between 25 and 78 years with normal PSA levels of ≤4.0 ng/mL. We evaluated the biodiversity of gut microbiota as well as the taxonomic and functional signatures associated with PSA levels using 16S rRNA gene sequencing data. PSA levels within the normal range were categorized into three groups: lowest quartile (G1), interquartile range (G2, reference), and highest quartile (G3). The G3 group had higher microbial richness than the G2 group, although it was dominated by a few bacteria. An increase in Escherichia/Shigella abundance and a reduction in Megamonas abundance in the G3 group were also detected. A U-shaped relationship was observed between the three groups across most analyses, including biodiversity, taxonomic composition, and inferred pathways in the gut microbiota. This study showed different microbiota patterns across PSA levels within the normal range. Further studies are required to elucidate the role of microbiota in regulating PSA levels.

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Alterations of gut microbiota composition in post-finasteride patients: a pilot study

Journal of Endocrinological Investigation ◽

10.1007/s40618-020-01424-0 ◽

2020 ◽

Author(s):

F. Borgo ◽

A. D. Macandog ◽

S. Diviccaro ◽

E. Falvo ◽

S. Giatti ◽

...

Keyword(s):

Sexual Dysfunction ◽

Gut Microbiota ◽

16S Rrna Gene Sequencing ◽

Fecal Microbiota ◽

Rrna Gene ◽

Microbiota Composition ◽

Sample Collection ◽

Persistent Symptoms ◽

Α Diversity ◽

Gut Microbiota Composition

Abstract Purpose Post-finasteride syndrome (PFS) has been reported in a subset of patients treated with finasteride (an inhibitor of the enzyme 5alpha-reductase) for androgenetic alopecia. These patients showed, despite the suspension of the treatment, a variety of persistent symptoms, like sexual dysfunction and cognitive and psychological disorders, including depression. A growing body of literature highlights the relevance of the gut microbiota-brain axis in human health and disease. For instance, alterations in gut microbiota composition have been reported in patients with major depressive disorder. Therefore, we have here analyzed the gut microbiota composition in PFS patients in comparison with a healthy cohort. Methods Fecal microbiota of 23 PFS patients was analyzed by 16S rRNA gene sequencing and compared with that reported in ten healthy male subjects. Results Sexual dysfunction, psychological and cognitive complaints, muscular problems, and physical alterations symptoms were reported in more than half of the PFS patients at the moment of sample collection. The quality sequence check revealed a low library depth for two fecal samples. Therefore, the gut microbiota analyses were conducted on 21 patients. The α-diversity was significantly lower in PFS group, showing a reduction of richness and diversity of gut microbiota structure. Moreover, when visualizing β-diversity, a clustering effect was found in the gut microbiota of a subset of PFS subjects, which was also characterized by a reduction in Faecalibacterium spp. and Ruminococcaceae UCG-005, while Alloprevotella and Odoribacter spp were increased compared to healthy control. Conclusion Gut microbiota population is altered in PFS patients, suggesting that it might represent a diagnostic marker and a possible therapeutic target for this syndrome.

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Gut microbiota composition and metabolomic profiles of wild and captive Chinese monals (Lophophorus lhuysii)

Frontiers in Zoology ◽

10.1186/s12983-020-00381-x ◽

2020 ◽

Vol 17 (1) ◽

Author(s):

Dandan Jiang ◽

Xin He ◽

Marc Valitutto ◽

Li Chen ◽

Qin Xu ◽

...

Keyword(s):

Gut Microbiota ◽

High Performance ◽

Bird Species ◽

Alpha Diversity ◽

Integrated Approach ◽

Fecal Microbiota ◽

Rrna Gene ◽

Microbiota Composition ◽

Metabolomic Profile ◽

Gut Microbiota Composition

Abstract Background The Chinese monal (Lophophorus lhuysii) is an endangered bird species, with a wild population restricted to the mountains in southwest China, and only one known captive population in the world. We investigated the fecal microbiota and metabolome of wild and captive Chinese monals to explore differences and similarities in nutritional status and digestive characteristics. An integrated approach combining 16S ribosomal RNA (16S rRNA) gene sequencing and ultra-high performance liquid chromatography (UHPLC) based metabolomics were used to examine the fecal microbiota composition and the metabolomic profile of Chinese monals. Results The results showed that the alpha diversity of gut microbes in the wild group were significantly higher than that in the captive group and the core bacterial taxa in the two groups showed remarkable differences at phylum, class, order, and family levels. Metabolomic profiling also revealed differences, mainly related to galactose, starch and sucrose metabolism, fatty acid, bile acid biosynthesis and bile secretion. Furthermore, strong correlations between metabolite types and bacterial genus were detected. Conclusions There were remarkable differences in the gut microbiota composition and metabolomic profile between wild and captive Chinese monals. This study has established a baseline for a normal gut microbiota and metabolomic profile for wild Chinese monals, thus allowing us to evaluate if differences seen in captive organisms have an impact on their overall health and reproduction.

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Gut Microbiota Associations with Metabolic Health and Obesity Status in Older Adults

Nutrients ◽

10.3390/nu12082364 ◽

2020 ◽

Vol 12 (8) ◽

pp. 2364 ◽

Cited By ~ 1

Author(s):

Xiaozhong Zhong ◽

Janas M. Harrington ◽

Seán R. Millar ◽

Ivan J. Perry ◽

Paul W. O’Toole ◽

...

Keyword(s):

Older Adults ◽

Health Status ◽

Gut Microbiota ◽

Gut Microbiome ◽

Alpha Diversity ◽

Metabolic Health ◽

Rrna Gene ◽

Phylogenetic Distance ◽

Microbiota Composition ◽

Gut Microbiota Composition

Emerging evidence links the gut microbiota with several chronic diseases. However, the relationships between metabolic syndrome (MetS), obesity and the gut microbiome are inconsistent. This study aimed to investigate associations between gut microbiota composition and diversity and metabolic health status in older adults (n = 382; median age = 69.91 [± 5 years], male = 50.79%) with and without obesity. Gut microbiome composition was determined by sequencing 16S rRNA gene amplicons. Results showed that alpha diversity and richness, as indicated by the Chao1 index (p = 0.038), phylogenetic diversity (p = 0.003) and observed species (p = 0.038) were higher among the metabolically healthy non-obese (MHNO) individuals compared to their metabolically unhealthy non-obese (MUNO) counterparts. Beta diversity analysis revealed distinct differences between the MHNO and MUNO individuals on the phylogenetic distance scale (R2 = 0.007, p = 0.004). The main genera contributing to the gut composition among the non-obese individuals were Prevotella, unclassified Lachnospiraceae, and unclassified Ruminococcaceae. Prevotella, Blautia, Bacteroides, and unclassified Ruminococcaceae mainly contributed to the variation among the obese individuals. Co-occurrence network analysis displayed different modules pattern among different metabolic groups and revealed groups of microbes significantly correlated with individual metabolic health markers. These findings confirm relationships between metabolic health status and gut microbiota composition particularly, among non-obese older adults.

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Plasma Metabolites Related to Peripheral and Hepatic Insulin Sensitivity Are Not Directly Linked to Gut Microbiota Composition

Nutrients ◽

10.3390/nu12082308 ◽

2020 ◽

Vol 12 (8) ◽

pp. 2308

Author(s):

Annefleur M. Koopen ◽

Nicolien C. de Clercq ◽

Moritz V. Warmbrunn ◽

Hilde Herrema ◽

Mark Davids ◽

...

Keyword(s):

Insulin Sensitivity ◽

Gut Microbiota ◽

Prediction Models ◽

Alpha Diversity ◽

Amplicon Sequencing ◽

Plasma Metabolites ◽

Rrna Gene ◽

Microbiota Composition ◽

Cross Sectional ◽

Gut Microbiota Composition

Plasma metabolites affect a range of metabolic functions in humans, including insulin sensitivity (IS). A subset of these plasma metabolites is modified by the gut microbiota. To identify potential microbial–metabolite pathways involved in IS, we investigated the link between plasma metabolites, gut microbiota composition, and IS, using the gold-standard for peripheral and hepatic IS measurement in a group of participants with metabolic syndrome (MetSyn). In a cross-sectional study with 115 MetSyn participants, fasting plasma samples were collected for untargeted metabolomics analysis and fecal samples for 16S rRNA gene amplicon sequencing. A two-step hyperinsulinemic euglycemic clamp was performed to assess peripheral and hepatic IS. Collected data were integrated and potential interdependence between metabolites, gut microbiota, and IS was analyzed using machine learning prediction models. Plasma metabolites explained 13.2% and 16.7% of variance in peripheral and hepatic IS, respectively. Fecal microbiota composition explained 4.2% of variance in peripheral IS and was not related to hepatic IS. Although metabolites could partially explain the variances in IS, the top metabolites related to peripheral and hepatic IS did not significantly correlate with gut microbiota composition (both on taxonomical level and alpha-diversity). However, all plasma metabolites could explain 18.5% of the variance in microbial alpha-diversity (Shannon); the top 20 metabolites could even explain 44.5% of gut microbial alpha-diversity. In conclusion, plasma metabolites could partially explain the variance in peripheral and hepatic IS; however, these metabolites were not directly linked to the gut microbiota composition, underscoring the intricate relation between plasma metabolites, the gut microbiota, and IS in MetSyn

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Association of Moderate Beer Consumption with the Gut Microbiota and SCFA of Healthy Adults

Molecules ◽

10.3390/molecules25204772 ◽

2020 ◽

Vol 25 (20) ◽

pp. 4772

Author(s):

Natalia González-Zancada ◽

Noemí Redondo-Useros ◽

Ligia E. Díaz ◽

Sonia Gómez-Martínez ◽

Ascensión Marcos ◽

...

Keyword(s):

Gut Microbiota ◽

Butyric Acid ◽

16S Rrna Gene Sequencing ◽

Consumption Pattern ◽

Rrna Gene ◽

Microbiota Composition ◽

Beer Consumption ◽

Β Diversity ◽

Total Alcohol ◽

Gut Microbiota Composition

Fermented alcoholic drinks’ contribution to the gut microbiota composition is mostly unknown. However, intestinal microorganisms can use compounds present in beer. This work explored the associations between moderate consumption of beer, microbiota composition, and short chain fatty acid (SCFA) profile. Seventy eight subjects were selected from a 261 healthy adult cohort on the basis of their alcohol consumption pattern. Two groups were compared: (1) abstainers or occasional consumption (ABS) (n = 44; <1.5 alcohol g/day), and (2) beer consumption ≥70% of total alcohol (BEER) (n = 34; 200 to 600 mL 5% vol. beer/day; <15 mL 13% vol. wine/day; <15 mL 40% vol. spirits/day). Gut microbiota composition (16S rRNA gene sequencing) and SCFA concentration were analyzed in fecal samples. No differences were found in α and β diversity between groups. The relative abundance of gut bacteria showed that Clostridiaceae was lower (p = 0.009), while Blautia and Pseudobutyrivibrio were higher (p = 0.044 and p = 0.037, respectively) in BEER versus ABS. In addition, Alkaliphilus, in men, showed lower abundance in BEER than in ABS (p = 0.025). Butyric acid was higher in BEER than in ABS (p = 0.032), and correlated with Pseudobutyrivibrio abundance. In conclusion, the changes observed in a few taxa, and the higher butyric acid concentration in consumers versus non-consumers of beer, suggest a potentially beneficial effect of moderate beer consumption on intestinal health.

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