scholarly journals Fine-Scale Population Structure but Limited Genetic Differentiation in a Cooperatively Breeding Paper Wasp

2020 ◽  
Vol 12 (5) ◽  
pp. 701-714 ◽  
Author(s):  
Sarah E Bluher ◽  
Sara E Miller ◽  
Michael J Sheehan
Keyword(s):  
Population Structure ◽  
Genetic Differentiation ◽  
Cooperative Breeding ◽  
Isolation By Distance ◽  
Spatial Scales ◽  
Paper Wasp ◽  
Paper Wasps ◽  
Natal Philopatry ◽  
Continental Scale ◽  
Cooperatively Breeding

Abstract Relatively little is known about the processes shaping population structure in cooperatively breeding insect species, despite the long-hypothesized importance of population structure in shaping patterns of cooperative breeding. Polistes paper wasps are primitively eusocial insects, with a cooperative breeding system in which females often found nests in cooperative associations. Prior mark-recapture studies of Polistes have documented extreme female philopatry, although genetic studies frequently fail to detect the strong population structure expected for highly philopatric species. Together these findings have led to lack of consensus on the degree of dispersal and population structure in these species. This study assessed population structure of female Polistes fuscatus wasps at three scales: within a single site, throughout Central New York, and across the Northeastern United States. Patterns of spatial genetic clustering and isolation by distance were observed in nuclear and mitochondrial genomes at the continental scale. Remarkably, population structure was evident even at fine spatial scales within a single collection site. However, P. fuscatus had low levels of genetic differentiation across long distances. These results suggest that P. fuscatus wasps may employ multiple dispersal strategies, including extreme natal philopatry as well as longer-distance dispersal. We observed greater genetic differentiation in mitochondrial genes than in the nuclear genome, indicative of increased dispersal distances in males. Our findings support the hypothesis that limited female dispersal contributes toward population structure in paper wasps.

Genetic isolation by distance and localized fjord population structure in Pacific cod (Gadus macrocephalus): limited effective dispersal in the northeastern Pacific Ocean

2009 ◽  
Vol 66 (1) ◽  
pp. 153-166 ◽  
Author(s):  
Kathryn Maja Cunningham ◽  
Michael Francis Canino ◽  
Ingrid Brigette Spies ◽  
Lorenz Hauser
Keyword(s):  
Population Structure ◽  
Pacific Ocean ◽  
Isolation By Distance ◽  
Spatial Scales ◽  
Puget Sound ◽  
Pacific Cod ◽  
Genetic Population ◽  
Pacific Cod Gadus Macrocephalus ◽  
Gadus Macrocephalus ◽  
Northeastern Pacific

Genetic population structure of Pacific cod, Gadus macrocephalus , was examined across much of its northeastern Pacific range by screening variation at 11 microsatellite DNA loci. Estimates of FST (0.005 ± 0.002) and RST (0.010 ± 0.003) over all samples suggested that effective dispersal is limited among populations. Genetic divergence was highly correlated with geographic distance in an isolation-by-distance (IBD) pattern along the entire coastal continuum in the northeastern Pacific Ocean (~4000 km; r2 = 0.83), extending from Washington State to the Aleutian Islands, and over smaller geographic distances for three locations in Alaska (~1700 km; r2 = 0.56). Slopes of IBD regressions suggested average dispersal distance between birth and reproduction of less than 30 km. Exceptions to this pattern were found in samples taken from fjord environments in the Georgia Basin (the Strait of Georgia (Canada) and Puget Sound (USA)), where populations were differentiated from coastal cod. Our results showed population structure at spatial scales relevant to fisheries management, both caused by limited dispersal along the coast and by sharp barriers to migration isolating smaller stocks in coastal fjord environments.

scholarly journals Birds are islands for parasites

2014 ◽  
Vol 10 (8) ◽  
pp. 20140255 ◽  
Author(s):  
Jennifer A. H. Koop ◽  
Karen E. DeMatteo ◽  
Patricia G. Parker ◽  
Noah K. Whiteman
Keyword(s):  
Population Structure ◽  
Genetic Structure ◽  
Population Genetic Structure ◽  
Population Genetic ◽  
Evolutionary Biology ◽  
Isolation By Distance ◽  
Spatial Scales ◽  
Island Populations ◽  
Louse Species ◽  
Parasite Populations

Understanding the mechanisms driving the extraordinary diversification of parasites is a major challenge in evolutionary biology. Co-speciation, one proposed mechanism that could contribute to this diversity is hypothesized to result from allopatric co-divergence of host–parasite populations. We found that island populations of the Galápagos hawk ( Buteo galapagoensis ) and a parasitic feather louse species ( Degeeriella regalis ) exhibit patterns of co-divergence across variable temporal and spatial scales. Hawks and lice showed nearly identical population genetic structure across the Galápagos Islands. Hawk population genetic structure is explained by isolation by distance among islands. Louse population structure is best explained by hawk population structure, rather than isolation by distance per se , suggesting that lice tightly track the recent population histories of their hosts. Among hawk individuals, louse populations were also highly structured, suggesting that hosts serve as islands for parasites from an evolutionary perspective. Altogether, we found that host and parasite populations may have responded in the same manner to geographical isolation across spatial scales. Allopatric co-divergence is likely one important mechanism driving the diversification of parasites.

scholarly journals Population structure and dispersal across small and large spatial scales in a direct developing marine isopod

2020 ◽  
Author(s):  
William S. Pearman ◽  
Sarah J. Wells ◽  
Olin K. Silander ◽  
Nikki E. Freed ◽  
James Dale
Keyword(s):  
Population Structure ◽  
Gene Flow ◽  
Population Genetic ◽  
Isolation By Distance ◽  
Spatial Scales ◽  
Population Connectivity ◽  
Clear Pattern ◽  
Small Spatial Scale ◽  
Cook Strait ◽  
Genetic Break

AbstractMarine organisms generally exhibit one of two developmental modes: biphasic, with distinct adult and larval morphology, and direct development, in which larvae resemble adults. Developmental mode is thought to significantly influence dispersal, with direct developers expected to have much lower dispersal potential. However, in contrast to our relatively good understanding of dispersal and population connectivity for biphasic species, comparatively little is known about direct developers. In this study, we use a panel of 8,020 SNPs to investigate population structure and gene flow for a direct developing species, the New Zealand endemic marine isopod Isocladus armatus. On a small spatial scale (20 kms), gene flow between locations is extremely high and suggests an island model of migration. However, over larger spatial scales (600km), populations exhibit a clear pattern of isolation-by-distance. Because our sampling range is intersected by two well-known biogeographic barriers (the East Cape and the Cook Strait), our study provides an opportunity to understand how such barriers influence dispersal in direct developers. Our results indicate that I. armatus exhibits significant migration across these barriers, and suggests that ocean currents associated with these locations do not present a barrier to dispersal. Interestingly, we do find evidence of a north-south population genetic break occurring between Māhia and Wellington, two locations where there are no obvious biogeographic barriers between them. We conclude that developmental life history largely predicts dispersal in intertidal marine isopods. However, localised biogeographic processes can disrupt this expectation.

scholarly journals Stable genetic structure and connectivity in pollution-adapted and nearby pollution-sensitive populations of Fundulus heteroclitus

2018 ◽  
Vol 5 (5) ◽  
pp. 171532 ◽  
Author(s):  
Joaquin C. B. Nunez ◽  
Leann M. Biancani ◽  
Patrick A. Flight ◽  
Diane E. Nacci ◽  
David M. Rand ◽  
...  
Keyword(s):  
Population Structure ◽  
Genetic Variation ◽  
Fundulus Heteroclitus ◽  
Isolation By Distance ◽  
Spatial Scales ◽  
Purifying Selection ◽  
Spatial Distance ◽  
Estuarine Fish ◽  
Synonymous Mutations ◽  
Microsatellite Analyses

Populations of the non-migratory estuarine fish Fundulus heteroclitus inhabiting the heavily polluted New Bedford Harbour (NBH) estuary have shown inherited tolerance to local pollutants introduced to their habitats in the past 100 years. Here we examine two questions: (i) Is there pollution-driven selection on the mitochondrial genome across a fine geographical scale? and (ii) What is the pattern of migration among sites spanning a strong pollution gradient? Whole mitochondrial genomes were analysed for 133 F. heteroclitus from seven nearby collection sites: four sites along the NBH pollution cline (approx. 5 km distance), which had pollution-adapted fish, as well as one site adjacent to the pollution cline and two relatively unpolluted sites about 30 km away, which had pollution-sensitive fish. Additionally, we used microsatellite analyses to quantify genetic variation over three F. heteroclitus generations in both pollution-adapted and sensitive individuals collected from two sites at two different time points (1999/2000 and 2007/2008). Our results show no evidence for a selective sweep of mtDNA in the polluted sites. Moreover, mtDNA analyses revealed that both pollution-adapted and sensitive populations harbour similar levels of genetic diversity. We observed a high level of non-synonymous mutations in the most polluted site. This is probably associated with a reduction in N e and concomitant weakening of purifying selection, a demographic expansion following a pollution-related bottleneck or increased mutation rates. Our demographic analyses suggest that isolation by distance influences the distribution of mtDNA genetic variation between the pollution cline and the clean populations at broad spatial scales. At finer scales, population structure is patchy, and neither spatial distance, pollution concentration or pollution tolerance is a good predictor of mtDNA variation. Lastly, microsatellite analyses revealed stable population structure over the last decade.

scholarly journals Inclusive-fitness logic of cooperative breeding with benefits of natal philopatry

2014 ◽  
Vol 369 (1642) ◽  
pp. 20130361 ◽  
Author(s):  
Geoff Wild ◽  
Cody Koykka
Keyword(s):  
Computer Simulation ◽  
Life History ◽  
Cooperative Breeding ◽  
Inclusive Fitness ◽  
Social Groups ◽  
Reproductive Skew ◽  
Natal Philopatry ◽  
Evolutionary Transition ◽  
Model Predictions ◽  
Cooperatively Breeding

In cooperatively breeding species, individuals help to raise offspring that are not their own. We use two inclusive-fitness models to study the advantage of this kind of helpful behaviour in social groups with high reproductive skew. Our first model does not allow for competition among relatives to occur but our second model does. Specifically, our second model assumes a competitive hierarchy among nest-mates, with non-breeding helpers ranked higher than their newborn siblings. For each model, we obtain an expression for the change in inclusive fitness experienced by a helpful individual in a selfish population. The prediction suggested by each expression is confirmed with computer simulation. When model predictions are compared to one another, we find that helping emerges under a broader range of conditions in the second model. Although competition among kin occurs in our second model, we conclude that the life-history features associated with this competition also act to promote the evolutionary transition from solitary to cooperative breeding.

scholarly journals Population level genetic differentiation among temperate Neoconocephalus katydids

2017 ◽  
Author(s):  
◽  
Gideon Ney
Keyword(s):  
Genetic Differentiation ◽  
Gulf Coast ◽  
Isolation By Distance ◽  
Population Level ◽  
Genetic Isolation ◽  
Continental Scale ◽  
Pattern Of Variation ◽  
Habitat Generalist ◽  
Species Specific ◽  
The Impact

Recent work indicates that radiation events may play a significant role in shaping species diversity across entire continents. Here we quantify population level genetic differentiation in several species of Neoconocephalus katydids in order to determine the mechanisms of genetic isolation across a continental scale. Patterns of genetic isolation can be generalized into four types: isolation by resistance (IBR), isolation by barrier (IBB), isolation by distance (IBD), and epigenetic incompatibility. N. melanorhinus is a salt marsh specialist restricted to a narrow corridor along the Atlantic and Gulf coasts. IBD was the predominant pattern of variation across their range. In addition, we saw evidence of two possible biogeographic barriers to gene flow (IBB), one at the Atlantic-Gulf divide and the other along the Gulf coast. We investigated the impact of IBR by comparing genetic differentiation between a habitat specialist, N. bivocatus, and a habitat generalist, N. robustus. Similar levels of genetic diversity and genetic differentiation were present within populations of both species. Genetic variation and epigenetic changes can diverge between populations in isolation. We found significant variation in total methylation levels between N. bivocatus and N. robustus. Genetic differentiation did a better job of explaining species-specific phenotypes than epigenetic differentiation. Epigenetic differentiation, although present between species, is likely the result of an interaction between genetic and epigenetic loci.

scholarly journals Complex population structure of the Atlantic puffin revealed by whole genome analyses

2020 ◽  
Author(s):  
Oliver Kersten ◽  
Bastiaan Star ◽  
Deborah M. Leigh ◽  
Tycho Anker-Nilssen ◽  
Hallvard Strøm ◽  
...  
Keyword(s):  
Population Structure ◽  
Gene Flow ◽  
Isolation By Distance ◽  
Spatial Scales ◽  
Secondary Contact ◽  
Whole Genome ◽  
Genome Data ◽  
Complex Population ◽  
Genome Analyses ◽  
Atlantic Puffin

AbstractThe factors underlying gene flow and genomic population structure in vagile seabirds are notoriously difficult to understand due to their complex ecology with diverse dispersal barriers and extensive periods at sea. Yet, such understanding is vital for conservation management of seabirds that are globally declining at alarming rates. Here, we elucidate the population structure of the Atlantic puffin (Fratercula arctica) by assembling its reference genome and analyzing genome-wide resequencing data of 72 individuals from 12 colonies. We identify four large, genetically distinct clusters, observe isolation-by-distance between colonies within these clusters, and obtain evidence for a secondary contact zone. These observations disagree with the current taxonomy, and show that a complex set of contemporary biotic factors impede gene flow over different spatial scales. Our results highlight the power of whole genome data to reveal unexpected population structure in vagile marine seabirds and its value for seabird taxonomy, evolution and conservation.

Prominent genetic structure across native and introduced ranges of Pluchea indica, a mangrove associate, as revealed by microsatellite markers

2020 ◽  
Vol 13 (3) ◽  
pp. 341-353
Author(s):  
Yuting Lin ◽  
Achyut Kumar Banerjee ◽  
Haidan Wu ◽  
Fengxiao Tan ◽  
Hui Feng ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Genetic Variation ◽  
Genetic Structure ◽  
Genetic Differentiation ◽  
Spatial Scales ◽  
Large Spatial Scale ◽  
Introduced Range ◽  
Native And Introduced Ranges ◽  
Mangrove Associate

Abstract Aims Pluchea indica is a mangrove-associate species, known for its medicinal properties in its native range and being invasive in part of its introduced range. This study aimed to assess geographic distribution of genetic variation of this species across its distribution range, identify the factors influencing its genetic structure and use this information to suggest conservation and management strategies in its native and introduced ranges, respectively. Methods We assessed the genetic diversity and population structure of 348 individuals from 31 populations across its native (Asia) and introduced (USA) ranges for 15 nuclear microsatellite loci. The spatial pattern of genetic variation was investigated at both large and regional spatial scales with the hypothesis that geographic distance and natural geographic barriers would influence the population structure with varying levels of differentiation across spatial scales. Important Findings We found relatively high genetic diversity at the population level and pronounced genetic differentiation in P. indica, as compared with the genetic diversity parameters of mangroves and mangrove associates in this region. Most of the populations showed heterozygote deficiency, primarily due to inbreeding and impediment of gene flow. Analysis of population structures at large spatial scale revealed the presence of two major clusters across the species’ natural range separating populations in China from those in Indonesia, Malaysia, Singapore, Thailand, Cambodia and Philippines, and that the USA population might have been introduced from the population cluster in China. Genetic differentiation between populations was also observed at the regional scale. A large number of populations showed evidence of genetic bottleneck, thereby emphasizing the risk of local extinction. Based on these findings, our study recommends in situ conservation strategies, such as to prioritize populations for conservation actions and to maintain genetic diversity.

scholarly journals Estimation of the Genetic Diversity and Population Structure of Thailand’s Rice Landraces Using SNP Markers

Agronomy ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 995
Author(s):  
Wanchana Aesomnuk ◽  
Siriphat Ruengphayak ◽  
Vinitchan Ruanjaichon ◽  
Tanee Sreewongchai ◽  
Chanate Malumpong ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Genetic Differentiation ◽  
Isolation By Distance ◽  
Mantel Test ◽  
Snp Markers ◽  
High Yield ◽  
Rice Varieties ◽  
Rice Landraces ◽  
Geographical Regions

Rice is a staple food for more than half of the world’s population. Modern rice varieties have been developed for high yield and quality; however, there has been a substantial loss of diversity. A greater number of genetically dynamic landraces could offer valuable and useful genetic resources for rice improvement. In this study, the genetic diversity and population structure of 365 accessions of lowland and upland landraces from four populations from different geographical regions of Thailand were investigated using 75 SNP markers. Clustering analyses using maximum likelihood, Principal Coordinate Analysis (PCoA), and Discriminant Analysis of Principal Components (DAPC) clustered these landraces into two main groups, corresponding to indica and japonica groups. The indica group was further clustered into two subgroups according to the DAPC and STRUCTURE analyses (K = 3). The analysis of molecular variance (AMOVA) analysis results revealed that 91% of the variation was distributed among individuals, suggesting a high degree of genetic differentiation among rice accessions within the populations. Pairwise FST showed the greatest genetic differentiation between the northeastern and southern populations and the smallest genetic differentiation between the northern and northeastern populations. Isolation-by-distance analysis based on a Mantel test indicated a significant relationship between the genetic distance and geographic distance among the Thai rice landraces. The results from this study provide insight into the genetic diversity of Thai rice germplasm, which will enhance the germplasm characterization, conservation, and utilization in rice genetics and breeding.

scholarly journals Genetic Differentiation Within and Between Two Habitats

Genetics ◽  
1999 ◽  
Vol 151 (1) ◽  
pp. 397-407 ◽  
Author(s):  
François Rousset
Keyword(s):  
Population Structure ◽  
Genetic Differentiation ◽  
Population Differentiation ◽  
Gene Diversity ◽  
Isolation By Distance ◽  
Host Races ◽  
Wide Range ◽  
Parameter Values ◽  
Ecological Types ◽  
F Statistics

Abstract We investigate the usefulness of analyses of population differentiation between different ecological types, such as host races of parasites or sources and sink habitats. To that aim, we formulate a model of population structure involving two classes of subpopulations found in sympatry. Extensions of previous results for Wright's F-statistics in island and isolation-by-distance models of dispersal are given. It is then shown that source and sinks cannot in general be distinguished by F-statistics nor by their gene diversities. The excess differentiation between two partially isolated classes with respect to differentiation within classes is shown to decrease with distance, and for a wide range of parameter values it should be difficult to detect. In the same circumstances little differentiation will be observed in “hierarchical analyses between pools of samples from each habitat, and differences between levels of differentiation within each habitat will only reflect differences between levels of gene diversity within each habitat. Exceptions will indicate strong isolation between the different classes or habitat-related divergent selection.

Sign in / Sign up

Export Citation Format

Share Document