Easily Implemented Methods of Radiometric Corrections for Hyperspectral–UAV—Application to Guianese Equatorial Mudbanks Colonized by Pioneer Mangroves

Hyper-DRELIO (Hyperspectral DRone for Environmental and LIttoral Observations) is a custom, mini-UAV (unmanned aerial vehicle) platform (<20 kg), equipped with a light push broom hyperspectral sensor combined with a navigation module measuring position and orientation. Because of the particularities of UAV surveys (low flight altitude, small spatial scale, and high resolution), dedicated pre-processing methods have to be developed when reconstructing hyperspectral imagery. This article presents light, easy-implementation, in situ methods, using only two Spectralon® and a field spectrometer, allowing performance of an initial calibration of the sensor in order to correct “vignetting effects” and a field standardization to convert digital numbers (DN) collected by the hyperspectral camera to reflectance, taking into account the time-varying illumination conditions. Radiometric corrections are applied to a subset of a dataset collected above mudflats colonized by pioneer mangroves in French Guiana. The efficiency of the radiometric corrections is assessed by comparing spectra from Hyper-DRELIO imagery to in situ spectrometer measurements above the intertidal benthic biofilm and mangroves. The shapes of the spectra were consistent, and the spectral angle mapper (SAM) distance was 0.039 above the benthic biofilm and 0.159 above the mangroves. These preliminary results provide new perspectives for quantifying and mapping the benthic biofilm and mangroves at the scale of the Guianese intertidal mudbanks system, given their importance in the coastal food webs, biogeochemical cycles, and the sediment stabilization.

Using Isotopic Data to Evaluate Esox lucius (Linnaeus, 1758) Natal Origins in a Hydrologically Complex River Basin

Otolith microchemistry has emerged as a powerful technique with which to identify the natal origins of fishes, but it relies on differences in underlying geology that may occur over large spatial scales. An examination of how small a spatial scale on which this technique can be implemented, especially in water bodies that share a large proportion of their flow, would be useful for guiding aquatic invasive species control efforts. We examined trace isotopic signatures in northern pike (Esox lucius) otoliths to estimate their provenance between two reservoirs in the Upper Yampa River Basin, Colorado, USA. This is a challenging study area as these reservoirs are only 11-rkm apart on the same river and thus share a high proportion of their inflow. We found that three isotopes (86Sr, 137Ba, and 55Mn) were useful in discriminating between these reservoirs, but their signatures varied annually, and the values overlapped. Strontium isotope ratios (87Sr/86Sr) were different between sites and relatively stable across three years, which made them an ideal marker for determining northern pike provenance. Our study demonstrates the usefulness of otolith microchemistry for natal origin determination within the same river over a relatively small spatial scale when there are geologic differences between sites, especially geologic differences underlying tributaries between sites.

Reproductive Ecology, Condition, and the Physical Environment of a Temperate Protogynous Hermaphrodite at a Small Scale

<p>Hermaphroditic reef fish display remarkable diversity in mating strategies, social structure, and the timing of sex change. Understanding spatial variation in reproductive ecology and physiological condition is important in the design of marine reserve systems and fisheries management for species that change sex. I investigated patterns in reproductive ecology, condition, and the influence of the underlying physical environment, for a temperate protogynous (female first) hermaphrodite, the spotty (Notolabrus celidotus) at a small spatial scale. First, I used SCUBA surveys to visually estimate density, sex ratio, and size-frequency to describe the social structure of two populations of spotties located at either end of a 9 km gradient in swell exposure. I then collected individuals from both locations to estimate growth, mortality, and the timing of maturation and sex change for each population. To estimate and compare physiological stress and condition of individuals sampled from these two locations, I used otoliths to quantify fluctuating asymmetry (a measure of stress) and I compared this to other commonly used condition indices. Lastly, I estimated spatial variation in social structure and a set of environmental variables at 30 sites along a gradient of swell exposure to investigate correlations between the physical environment and the density, sex ratio, and size-frequency of spotties. The results revealed that social structure differed markedly between two populations but not always as expected. A low ratio of males to females in sheltered Kau Bay suggested that the rate of sex change was constrained for this population (relative to Wahine Park, a more swell-exposed site, where males were more abundant in the population). Individuals from Kau Bay exhibited slower growth and higher mortality estimates, and in line with predictions of the size advantage model, females appeared to change sex at an early age and smaller size relative to Wahine Park. Contrary to expectations, however, low levels of fluctuating asymmetry suggested the population at Kau Bay was less stressed than Wahine Park, despite evidence for reduced physiological condition (Fulton’s condition factor K) and high density at Kau Bay. Differences in fluctuating asymmetry between sexes and size classes suggested that sex-specific fluctuating asymmetry and stressors later in the life history are important in these populations. Furthermore, correlations between social structure and the physical environment were inconclusive and highlight the necessity for large sampling efforts. Overall, this study concludes that availability of spawning-territory may limit the rate of sex change and influence reproductive potential in this species. This process may be applicable to other protogynous species that rely on territory-defense as a mating strategy. Sex-specific expression of fluctuating asymmetry should be considered in hermaphroditic reef fish and the impact of stressors acting on specific stages in the life history of individuals requires further investigation. Furthermore, my results suggest that condition indices and fluctuating asymmetry cannot be used interchangeably to estimate health for these populations (the metrics may provide complementary information). Overall, these results emphasise complex and variable patterns in the reproductive ecology of hermaphroditic species and my work is among the first to demonstrate such patterns over a small spatial scale. Further work can clarify questions raised in this study and benefit the conservation of hermaphroditic reef fish.</p>

Reproductive Ecology, Condition, and the Physical Environment of a Temperate Protogynous Hermaphrodite at a Small Scale

<p>Hermaphroditic reef fish display remarkable diversity in mating strategies, social structure, and the timing of sex change. Understanding spatial variation in reproductive ecology and physiological condition is important in the design of marine reserve systems and fisheries management for species that change sex. I investigated patterns in reproductive ecology, condition, and the influence of the underlying physical environment, for a temperate protogynous (female first) hermaphrodite, the spotty (Notolabrus celidotus) at a small spatial scale. First, I used SCUBA surveys to visually estimate density, sex ratio, and size-frequency to describe the social structure of two populations of spotties located at either end of a 9 km gradient in swell exposure. I then collected individuals from both locations to estimate growth, mortality, and the timing of maturation and sex change for each population. To estimate and compare physiological stress and condition of individuals sampled from these two locations, I used otoliths to quantify fluctuating asymmetry (a measure of stress) and I compared this to other commonly used condition indices. Lastly, I estimated spatial variation in social structure and a set of environmental variables at 30 sites along a gradient of swell exposure to investigate correlations between the physical environment and the density, sex ratio, and size-frequency of spotties. The results revealed that social structure differed markedly between two populations but not always as expected. A low ratio of males to females in sheltered Kau Bay suggested that the rate of sex change was constrained for this population (relative to Wahine Park, a more swell-exposed site, where males were more abundant in the population). Individuals from Kau Bay exhibited slower growth and higher mortality estimates, and in line with predictions of the size advantage model, females appeared to change sex at an early age and smaller size relative to Wahine Park. Contrary to expectations, however, low levels of fluctuating asymmetry suggested the population at Kau Bay was less stressed than Wahine Park, despite evidence for reduced physiological condition (Fulton’s condition factor K) and high density at Kau Bay. Differences in fluctuating asymmetry between sexes and size classes suggested that sex-specific fluctuating asymmetry and stressors later in the life history are important in these populations. Furthermore, correlations between social structure and the physical environment were inconclusive and highlight the necessity for large sampling efforts. Overall, this study concludes that availability of spawning-territory may limit the rate of sex change and influence reproductive potential in this species. This process may be applicable to other protogynous species that rely on territory-defense as a mating strategy. Sex-specific expression of fluctuating asymmetry should be considered in hermaphroditic reef fish and the impact of stressors acting on specific stages in the life history of individuals requires further investigation. Furthermore, my results suggest that condition indices and fluctuating asymmetry cannot be used interchangeably to estimate health for these populations (the metrics may provide complementary information). Overall, these results emphasise complex and variable patterns in the reproductive ecology of hermaphroditic species and my work is among the first to demonstrate such patterns over a small spatial scale. Further work can clarify questions raised in this study and benefit the conservation of hermaphroditic reef fish.</p>

Co-occurrence pattern of congeneric tree species provides conflicting evidence for competition relatedness hypothesis

In plants, negative reproductive interaction among closely related species (i.e., reproductive interference) is known to hamper the coexistence of congeneric species while facilitation can increase species persistence. Since reproductive interference in plants may occur through interspecific pollination, the effective range of reproductive interference may reflects the spatial range of interspecific pollination. Therefore, we hypothesized that the coexistence of congeners on a small spatial scale would be less likely to occur by chance but that such coexistence would be likely to occur on a scale larger than interspecific pollination frequently occur. In the present study, we tested this hypothesis using spatially explicit woody plant survey data. Contrary to our prediction, congeneric tree species often coexisted at the finest spatial scale and significant exclusive distribution was not detected. Our results suggest that cooccurrence of congeneric tree species is not structured by reproductive interference, and they indicate the need for further research to explore the factors that mitigate the effects of reproductive interference.

Deep genetic structure at a small spatial scale in the endangered land snail Xerocrassa montserratensis

Species with small geographic ranges do not tend to have a high genetic structure, but some land snail species seem to be an exception. Xerocrassa montserratensis, an endangered land snail endemic to Catalonia (northeastern Iberian Peninsula), is an excellent model to study the processes affecting the phylogeography of specialized species of conservation concern. This species is restricted to xerophilous stony slopes and occurs within a small and fragmented area of ca. 500 km2. We sequenced the COI barcode region of 152 individuals from eight sites covering the entire range of the species. We found four genetic groups mostly coincident with their geographic distribution: a central ancestral group containing shared haplotypes among five localities and three groups restricted to a single locality each. Two of these derived groups were geographically and genetically isolated, while the third and most differentiated group was not geographically isolated. Geomorphologic and paleoclimatic processes during the Pleistocene can explain the divergence found between populations of this low dispersal species with historical fragmentation and secondary contacts. Nonetheless, recent passive large dispersal through streams was also detected in the central group. Overall, our study uncovered four evolutionary units, partially matching morphologically described subspecies, which should be considered in future conservation actions.

Genetic differentiation over a small spatial scale in the smooth newt (Lissotriton vulgaris)

Understanding the distribution of genetic variation is central for both population biology and conservation genetics. Genetic population structure can be primarily affected by the species’ dispersal ability, which is assumed to be limited in many amphibians. In this study, we estimated allelic differentiation metrics and FST indices to investigate genetic variation among natural breeding ponds of smooth newts (Lissotriton vulgaris) over a small spatial scale. Based on six microsatellite loci, we found a small, but significant allelic differentiation among clusters of natural breeding ponds (i.e. ‘local regions’), which result was in line with the calculation of corresponding hierarchical FST values. Analysis of molecular variance also indicated significant between-region variation in the study area. Pairwise estimations showed that only the furthermost regions differed from each other in both differentiation measures, but this difference was not attributable to geographic distances between ponds. Our results provide evidence that hierarchical genetic structure can be characteristic to breeding ponds of smooth newts on a small spatial scale in their natural breeding habitat, but dispersal distance may be less limited than previously thought in these philopatric caudates.

Periinfarct rewiring supports recovery after primary motor cortex stroke

After stroke restricted to the primary motor cortex (M1), it is uncertain whether network reorganization associated with recovery involves the periinfarct or more remote regions. We studied 16 patients with focal M1 stroke and hand paresis. Motor function and resting-state MRI functional connectivity (FC) were assessed at three time points: acute (<10 days), early subacute (3 weeks), and late subacute (3 months). FC correlates of recovery were investigated at three spatial scales, (i) ipsilesional non-infarcted M1, (ii) core motor network (M1, premotor cortex (PMC), supplementary motor area (SMA), and primary somatosensory cortex), and (iii) extended motor network including all regions structurally connected to the upper limb representation of M1. Hand dexterity was impaired only in the acute phase ( P = 0.036). At a small spatial scale, clinical recovery was more frequently associated with connections involving ipsilesional non-infarcted M1 (Odds Ratio = 6.29; P = 0.036). At a larger scale, recovery correlated with increased FC strength in the core network compared to the extended motor network (rho = 0.71; P = 0.006). These results suggest that FC changes associated with motor improvement involve the perilesional M1 and do not extend beyond the core motor network. Core motor regions, and more specifically ipsilesional non-infarcted M1, could hence become primary targets for restorative therapies.

Frequent coexistence of closely related tree species on a small scale in temperate evergreen forests in Japan

Understanding how biotic interaction affects species composition and distribution is a major challenge in community ecology. In plants, negative reproductive interaction among closely related species (i.e., reproductive interference) is known to hamper the coexistence of congenic species. Since the magnitude of reproductive interference in plants depends on pollen flow distance, we hypothesized that the coexistence of congeners on a small spatial scale would be less likely to occur by chance but that such coexistence would be likely to occur on a scale larger than pollen flow distance. In the present study, we tested this hypothesis using spatially explicit woody plant survey data. Contrary to our prediction, congenic tree species often coexisted at the finest spatial scale and significant exclusive distribution was not detected. Our results suggest that cooccurrence of congenic tree species is not structured by reproductive interference, and they indicate the need for further research to explore the factors that mitigate the effects of reproductive interference.