scholarly journals M171. THE GENE-SHARING RELATIONSHIP OF SCHIZOPHRENIA WITH OTHER MENTAL OR SYSTEMIC DISORDERS: A DISEASE-SIMILARITY NETWORK ANALYSIS FOCUSED ON EGOCENTRIC NETWORK

2020 ◽  
Vol 46 (Supplement_1) ◽  
pp. S201-S202
Author(s):  
Seong Hoon Jeong ◽  
Hee-Yeon Jung ◽  
In Won Chung ◽  
Yong Sik Kim

Abstract Background Schizophrenia is an archetypal example that a psychiatric illness may not merely be a mental or a brain disorder but rather a systemic illness. It can be glimpsed from a wide range of biomarkers that span all the imaginable body systems, and from higher co-morbidity with other systemic illnesses. However, quantitative analysis of schizophrenia’s relationship with other diseases are not yet satisfactory. Genome-wide association studies have identified more than hundreds of genetic loci associated with schizophrenia. In turn, these loci are associated with a wide variety of other diseases. From this gene-disease relationship, a bipartite network can be built which, after appropriate projection, could help to map a complex disease-similarity network. In case of schizophrenia, it would reveal the position of schizophrenia among the broader categories of systemic illnesses. Methods DisGeNET is a discovery platform which contains one of the largest collections of gene-disease association data. The major source of the integrated data is the automatized curation from MEDLINE abstract. Therefore, it contains the timestamp of reported gene-disease association. Gene-disease-timestamp (year of publication) triplet was fed into a Neo4J graph database platform. From this, disease-disease relationships with shared gene count and Jaccard similarity score was extracted. The network structure of level 1.5 egocentric network centered upon schizophrenia was inspected. Louvain community detection algorithm was applied to expose underlying group structure among the 1st order alters. For comparison, similar ego-networks centered upon several major psychiatric illnesses were also inspected. Finally, the yearly variation of Jaccard score which reflected the accumulation of research data were monitored. Results The diseases which showed the highest Jaccard score (j) were bipolar disorder (j=0.203) and depressive disorder (j=0.190) as expected. Other diseases with meaningful similarity could be grouped into three communities: 1) psychiatric illness including bipolar/depressive disorder, 2) a variety of malignancies including neuroblastoma (j=0.083), stomach cancer (j=0.070) and pancreatic cancer (j=0.065) 3) other systemic illnesses including multiple sclerosis (j=0.088), metabolic syndrome (j=0.076), myocardial infarction (j=0.073), rheumatoid arthritis (j=0.070), lupus erythematosus (0.056). The gene-sharing relationship with systemic illnesses (malignancies and other) began to be revealed after 2005. Since then, more and more evidences were accumulated to solidify the schizophrenia’s link with systemic illnesses. Discussion Recently, a couple of large-scale epidemiological studies verified the significant correlation between prevalence of schizophrenia and cancer/autoimmune disorders. The present study results may augment these epidemiological data and thus strongly support the concept of schizophrenia as a systemic illness. Gene-sharing and its reflection in prevalence data would indicate deeper link at the level of pathogenesis with systemic illnesses. Recently, many authors contemplated the possible link between schizophrenia and cancer in terms of cell cycle regulation and control of apoptosis. Likewise, others suspected immunological disturbance as the fundamental mechanism of schizophrenia. In this vein, the need for extending the concept of mental disorders as a focused manifestation of systemic illness seems gaining impetus.

2021 ◽  
Vol 12 ◽  
Author(s):  
Jianlin Wang ◽  
Wenxiu Wang ◽  
Chaokun Yan ◽  
Junwei Luo ◽  
Ge Zhang

Drug repositioning is used to find new uses for existing drugs, effectively shortening the drug research and development cycle and reducing costs and risks. A new model of drug repositioning based on ensemble learning is proposed. This work develops a novel computational drug repositioning approach called CMAF to discover potential drug-disease associations. First, for new drugs and diseases or unknown drug-disease pairs, based on their known neighbor information, an association probability can be obtained by implementing the weighted K nearest known neighbors (WKNKN) method and improving the drug-disease association information. Then, a new drug similarity network and new disease similarity network can be constructed. Three prediction models are applied and ensembled to enable the final association of drug-disease pairs based on improved drug-disease association information and the constructed similarity network. The experimental results demonstrate that the developed approach outperforms recent state-of-the-art prediction models. Case studies further confirm the predictive ability of the proposed method. Our proposed method can effectively improve the prediction results.


2015 ◽  
Author(s):  
Zheng Ning ◽  
Yakov A. Tsepilov ◽  
Sodbo Zh. Sharapov ◽  
Alexander K. Grishenko ◽  
Xiao Feng ◽  
...  

AbstractThe ever-growing genome-wide association studies (GWAS) have revealed widespread pleiotropy. To exploit this, various methods which consider variant association with multiple traits jointly have been developed. However, most effort has been put on improving discovery power: how to replicate and interpret these discovered pleiotropic loci using multivariate methods has yet to be discussed fully. Using only multiple publicly available single-trait GWAS summary statistics, we develop a fast and flexible multi-trait framework that contains modules for (i) multi-trait genetic discovery, (ii) replication of locus pleiotropic profile, and (iii) multi-trait conditional analysis. The procedure is able to handle any level of sample overlap. As an empirical example, we discovered and replicated 23 novel pleiotropic loci for human anthropometry and evaluated their pleiotropic effects on other traits. By applying conditional multivariate analysis on the 23 loci, we discovered and replicated two additional multi-trait associated SNPs. Our results provide empirical evidence that multi-trait analysis allows detection of additional, replicable, highly pleiotropic genetic associations without genotyping additional individuals. The methods are implemented in a free and open source R package MultiABEL.Author summaryBy analyzing large-scale genomic data, geneticists have revealed widespread pleiotropy, i.e. single genetic variation can affect a wide range of complex traits. Methods have been developed to discover such genetic variants. However, we still lack insights into the relevant genetic architecture - What more can we learn from knowing the effects of these genetic variants?Here, we develop a fast and flexible statistical analysis procedure that includes discovery, replication, and interpretation of pleiotropic effects. The whole analysis pipeline only requires established genetic association study results. We also provide the mathematical theory behind the pleiotropic genetic effects testing.Most importantly, we show how a replication study can be essential to reveal new biology rather than solely increasing sample size in current genomic studies. For instance, we show that, using our proposed replication strategy, we can detect the difference in genetic effects between studies of different geographical origins.We applied the method to the GIANT consortium anthropometric traits to discover new genetic associations, replicated in the UK Biobank, and provided important new insights into growth and obesity.Our pipeline is implemented in an open-source R package MultiABEL, sufficiently efficient that allows researchers to immediately apply on personal computers in minutes.


RSC Advances ◽  
2017 ◽  
Vol 7 (51) ◽  
pp. 32216-32224 ◽  
Author(s):  
Xiaoying Li ◽  
Yaping Lin ◽  
Changlong Gu

The NSIM integrates the disease similarity network, miRNA similarity network, and known miRNA-disease association network on the basis of cousin similarity to predict not only novel miRNA-disease associations but also isolated diseases.


Author(s):  
Lei Li ◽  
Zhen Gao ◽  
Chun-Hou Zheng ◽  
Yu Wang ◽  
Yu-Tian Wang ◽  
...  

MicroRNAs (miRNAs) that belong to non-coding RNAs are verified to be closely associated with several complicated biological processes and human diseases. In this study, we proposed a novel model that was Similarity Network Fusion and Inductive Matrix Completion for miRNA-Disease Association Prediction (SNFIMCMDA). We applied inductive matrix completion (IMC) method to acquire possible associations between miRNAs and diseases, which also could obtain corresponding correlation scores. IMC was performed based on the verified connections of miRNA–disease, miRNA similarity, and disease similarity. In addition, miRNA similarity and disease similarity were calculated by similarity network fusion, which could masterly integrate multiple data types to obtain target data. We integrated miRNA functional similarity and Gaussian interaction profile kernel similarity by similarity network fusion to obtain miRNA similarity. Similarly, disease similarity was integrated in this way. To indicate the utility and effectiveness of SNFIMCMDA, we both applied global leave-one-out cross-validation and five-fold cross-validation to validate our model. Furthermore, case studies on three significant human diseases were also implemented to prove the effectiveness of SNFIMCMDA. The results demonstrated that SNFIMCMDA was effective for prediction of possible associations of miRNA–disease.


2020 ◽  
Vol 21 (6) ◽  
pp. 2194 ◽  
Author(s):  
Emily Yi-Chih Ting ◽  
Albert C. Yang ◽  
Shih-Jen Tsai

Major depressive disorder (MDD), which is a leading psychiatric illness across the world, severely affects quality of life and causes an increased incidence of suicide. Evidence from animal as well as clinical studies have indicated that increased peripheral or central cytokine interleukin-6 (IL-6) levels play an important role in stress reaction and depressive disorder, especially physical disorders comorbid with depression. Increased release of IL-6 in MDD has been found to be a factor associated with MDD prognosis and therapeutic response, and may affect a wide range of depressive symptomatology. However, study results of the IL6 genetic effects in MDD are controversial. Increased IL-6 activity may cause depression through activation of hypothalamic-pituitary-adrenal axis or influence of the neurotransmitter metabolism. The important role of neuroinflammation in MDD pathogenesis has created a new perspective that the combining of blood IL-6 and other depression-related cytokine levels may help to classify MDD biological subtypes, which may allow physicians to identify the optimal treatment for MDD patients. To modulate the IL-6 activity by IL-6-related agents, current antidepressive agents, herb medication, pre-/probiotics or non-pharmacological interventions may hold great promise for the MDD patients with inflammatory features.


2019 ◽  
Vol 35 (21) ◽  
pp. 4364-4371 ◽  
Author(s):  
Jiajie Peng ◽  
Weiwei Hui ◽  
Qianqian Li ◽  
Bolin Chen ◽  
Jianye Hao ◽  
...  

Abstract Motivation A microRNA (miRNA) is a type of non-coding RNA, which plays important roles in many biological processes. Lots of studies have shown that miRNAs are implicated in human diseases, indicating that miRNAs might be potential biomarkers for various types of diseases. Therefore, it is important to reveal the relationships between miRNAs and diseases/phenotypes. Results We propose a novel learning-based framework, MDA-CNN, for miRNA-disease association identification. The model first captures interaction features between diseases and miRNAs based on a three-layer network including disease similarity network, miRNA similarity network and protein-protein interaction network. Then, it employs an auto-encoder to identify the essential feature combination for each pair of miRNA and disease automatically. Finally, taking the reduced feature representation as input, it uses a convolutional neural network to predict the final label. The evaluation results show that the proposed framework outperforms some state-of-the-art approaches in a large margin on both tasks of miRNA-disease association prediction and miRNA-phenotype association prediction. Availability and implementation The source code and data are available at https://github.com/Issingjessica/MDA-CNN. Supplementary information Supplementary data are available at Bioinformatics online.


RSC Advances ◽  
2017 ◽  
Vol 7 (71) ◽  
pp. 44961-44971 ◽  
Author(s):  
Changlong Gu ◽  
Bo Liao ◽  
Xiaoying Li ◽  
Lijun Cai ◽  
Haowen Chen ◽  
...  

According to the miRNA and disease similarity network, the unknown associations are predicted by combining the known miRNA-disease association network based on collaborative filtering recommendation algorithm.


2020 ◽  
Vol 11 (11) ◽  
pp. 17-27
Author(s):  
Vadim V. VOEVODIN ◽  
◽  
Marina V. SOKOLOVA ◽  
Viktor R. SOLOV’YEV ◽  
Nikolay Yu. LYSOV ◽  
...  

The results from an experimental study of impulse surface discharge occurring in an electrode system containing a dielectric plate are presented. On one of its sides, the plate had a corona-producing electrode made of 50 mm thick copper foil grounded through a current shunt for measuring the discharge current. On its other side, the plate had a high-voltage electrode, to which the voltage from a pulse generator was applied. The article presents the results from measurements of the initial voltage and the sizes of the surface discharge area in air when applying single voltage pulses with different pulse front steepness in the range 0,1–3,4 kV/ms and amplitude in the range 7–15 kV. The measurements were carried out for different dielectric barrier materials with the e values from 2 to 35. The dielectric barrier thickness was 0,9–1,8 mm. The study results have shown that the initial surface discharge ignition voltage depends essentially on the voltage pulse parameters, whereas the barrier characteristics have a weaker effect on this voltage. It has been determined that the discharge has different discharge zone length and different structure depending on the dielectric barrier properties and applied voltage parameters. The streamer zone sizes decrease with increasing the barrier material e value at the same voltage pulse steepness and increase with increasing the steepness for each barrier material. The data obtained for a wide range of external conditions can be used in numerical modeling of discharge.


Author(s):  
Сергей Иванович Вележев ◽  
Антон Михайлович Седогин

В представленной статье авторами рассматриваются вопросы уголовно-правовой охраны топливно-энергетического комплекса Российской Федерации от преступных проявлений, в том числе от коррупционной противоправной деятельности должностных лиц. Такие действия причиняют значительный ущерб нормальному функционированию предприятий топливно-энергетического комплекса. Авторами приводятся результаты исследования некоторых криминологических характеристик должностных лиц, совершивших преступления коррупционного характера. Дан анализ причин и условий, способствующих совершению вышеуказанных противоправных действий. Определена типовая модель преступника для данной категории преступлений и его характеристики: в первую очередь, это высокий уровень компетентности, специальное образование и т. д. Авторами отмечается высокий уровень латентной преступности в данной отрасли. Предложены некоторые пути профилактики данной категории правонарушений. Исследование проводилось на основе анализа конкретных уголовных дел, возбужденных следственными органами по результатам оперативно-розыскной деятельности правоохранительных органов. In the article the authors consider the issues of criminal and legal protection of the fuel and energy complex of the Russian Federation from criminal activity including corrupt illegal practices of officials. The authors cite the results of some criminological characteristics study of the fuel and energy complex staff committed corruption crimes. As a result of these illegal actions significant damage is caused to the normal functioning of the fuel and energy enterprises. Such officials` actions determine not only a wide range of other illegal activities, but also lead to public outcry and discredit the industry as a whole. The analysis of the reasons and conditions contributing to the above illegal actions commission is given. A typical model of a criminal for a given crime category and its characteristics are determined. First of all it is a high level competence, special education, etc. A high level of latent crime in this industry is shown. The study results are presented on the example of specific criminal cases initiated by the investigating authorities based on the results of the operation detection activities of law enforcement agencies. Some ways of preventing this category of offenses are proposed.


2020 ◽  
Vol 21 (6) ◽  
pp. 466-470
Author(s):  
Emine Kandemis ◽  
Gulten Tuncel ◽  
Ozen Asut ◽  
Sehime G. Temel ◽  
Mahmut C. Ergoren

Background: The use of psychoactive substances is one of the most dangerous social problems worldwide. Nicotine dependence results from the interaction between neurobiological, environmental and genetic factors. Serotonin is a neurotransmitter that has a wide range of central nervous system activities. The serotonin transporter gene has been previously linked to psychological traits. Objective: A variable number of tandem repeats within the serotonin transporter-linked polymorphic gene region are believed to alter the transcriptional efficiency of the 5-HTT gene. Therefore, we aimed to investigate the association between this polymorphic site and smoking behavior in the Turkish Cypriot population. Methods: A total of 259 (100 smokers, 100 non-smokers and 59 ex-smokers) Turkish Cypriots were included in this population-based cross-sectional study. Genomic DNA was extracted from peripheral blood samples and the 5-HTTVNTR2 polymorphisms were determined by the PCR-RFLP. Results: The allelic frequency and genotype distribution results of this study showed a strong association (P<0.0001) between smokers and non-smokers. No statistical significance was found between non-smokers and ex-smokers. Conclusion: This is the first genetic epidemiology study to investigate the allelic frequencies of 5-HTTVNTR2 polymorphisms associated with smoking behavior in the Turkish Cypriot population. Based on the results of this study, genome-wide association studies should be designed for preventive medicine in this population.


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