scholarly journals A Greenhouse Method to Evaluate Sunflower Quantitative Resistance to Basal Stalk Rot Caused by Sclerotinia sclerotiorum

Plant Disease ◽  
2020 ◽  
pp. PDIS-08-19-1790 ◽  
Author(s):  
William Underwood ◽  
Christopher G. Misar ◽  
Charles Block ◽  
Thomas J. Gulya ◽  
Zahirul Talukder ◽  
...  
Keyword(s):  
Sclerotinia Sclerotiorum ◽  
Quantitative Resistance ◽  
Field Observations ◽  
Strongly Correlated ◽  
Stalk Rot ◽  
Pot Size ◽  
Inoculation Procedure ◽  
The Impact ◽  
Resistant Genotypes ◽  
Mapping Populations

Resistance of sunflower to basal stalk rot (BSR) caused by the fungus Sclerotinia sclerotiorum is quantitative, controlled by multiple genes contributing small effects. Consequently, artificial inoculation procedures allowing sufficient throughput and resolution of resistance are needed to identify highly resistant sunflower germplasm resources and to map loci contributing to resistance. The objective of this study was to develop a greenhouse-based method for evaluating sunflower quantitative resistance to BSR that would be simple, space- and time-efficient, high throughput, high resolution, and correlated with field observations. Experiments were conducted with 5-week-old sunflower plants and Sclerotinia-infested millet seed as inoculum to assess the impact of pot size and temperature and to determine the most favorable inoculum rate and placement. Subsequently, an additional experiment was performed to assess the correlation of the greenhouse inoculation procedure with field results by using a panel of 32 sunflower genotypes with known field response to BSR previously determined in multiyear, multilocation artificially inoculated trials. Experimental observations indicated that the newly developed greenhouse inoculation procedure provided improved resolution to identify highly resistant genotypes and was strongly correlated with field observations. This method will be useful for screening of sunflower experimental and breeding materials, disease phenotyping of genetic mapping populations, and evaluation of resistance to different pathogen isolates.

Modeling of pollution from the wastewater discharge of the city of Limassol

1995 ◽  
Vol 32 (9-10) ◽  
pp. 197-204
Author(s):  
G. C. Christodoulou ◽  
I. Ioakeim ◽  
K. Ioannou
Keyword(s):  
Field Observations ◽  
Wastewater Discharge ◽  
Dispersion Models ◽  
Preliminary Assessment ◽  
Westerly Winds ◽  
Dimensional Finite Element ◽  
The Impact ◽  
The City ◽  
Oceanographic Conditions ◽  
Continuous Loading

The paper presents a numerical modeling study aimed at a preliminary assessment of the impact of the planned sea outfall of the city of Limassol, Cyprus, on the waters of Akrotiri bay. First the local meteorological and oceanographic conditions as well as the loading characteristics are briefly reviewed. Two-dimensional finite element hydrodynamic and dispersion models are subsequently applied to the study area. The results of the former show an eastbound flow pattern under the prevailing westerly winds, in general agreement with available field observations. The spread of BOD and N under continuous loading is then examined for eastward as well as for westward flow as an indicator for the extent of pollution to be expected. The computed concentrations are generally low and confined to the shallower parts of the bay.

Analysis of the journal impact factor and related bibliometric indicators in education and educational research category

2021 ◽  
pp. 1-22
Author(s):  
Metin Orbay ◽  
Orhan Karamustafaoğlu ◽  
Ruben Miranda
Keyword(s):  
Impact Factor ◽  
Educational Research ◽  
Journal Impact Factor ◽  
Impact Factors ◽  
Bibliometric Indicators ◽  
Strongly Correlated ◽  
Starting Point ◽  
Consistent Assessment ◽  
The Impact ◽  
Journal Impact

This study analyzes the journal impact factor and related bibliometric indicators in Education and Educational Research (E&ER) category, highlighting the main differences among journal quartiles, using Web of Science (Social Sciences Citation Index, SSCI) as the data source. High impact journals (Q1) publish only slightly more papers than expected, which is different to other areas. The papers published in Q1 journal have greater average citations and lower uncitedness rates compared to other quartiles, although the differences among quartiles are lower than in other areas. The impact factor is only weakly negative correlated (r=-0.184) with the journal self-citation but strongly correlated with the citedness of the median journal paper (r= 0.864). Although this strong correlation exists, the impact factor is still far to be the perfect indicator for expected citations of a paper due to the high skewness of the citations distribution. This skewness was moderately correlated with the citations received by the most cited paper of the journal (r= 0.649) and the number of papers published by the journal (r= 0.484), but no important differences by journal quartiles were observed. In the period 2013–2018, the average journal impact factor in the E&ER has increased largely from 0.908 to 1.638, which is justified by the field growth but also by the increase in international collaboration and the share of papers published in open access. Despite their inherent limitations, the use of impact factors and related indicators is a starting point for introducing the use of bibliometric tools for objective and consistent assessment of researcher.

scholarly journals A Phantom Study to Investigate Robustness and Reproducibility of Grey Level Co-Occurrence Matrix (GLCM)-Based Radiomics Features for PET

2021 ◽  
Vol 11 (2) ◽  
pp. 535
Author(s):  
Mahbubunnabi Tamal
Keyword(s):  
Textural Features ◽  
Strongly Correlated ◽  
Segmentation Method ◽  
Diagnosis And Prognosis ◽  
Radiotracer Uptake ◽  
Positron Emission ◽  
Occurrence Matrix ◽  
The Impact ◽  
Robust To Noise

Quantification and classification of heterogeneous radiotracer uptake in Positron Emission Tomography (PET) using textural features (termed as radiomics) and artificial intelligence (AI) has the potential to be used as a biomarker of diagnosis and prognosis. However, textural features have been predicted to be strongly correlated with volume, segmentation and quantization, while the impact of image contrast and noise has not been assessed systematically. Further continuous investigations are required to update the existing standardization initiatives. This study aimed to investigate the relationships between textural features and these factors with 18F filled torso NEMA phantom to yield different contrasts and reconstructed with different durations to represent varying levels of noise. The phantom was also scanned with heterogeneous spherical inserts fabricated with 3D printing technology. All spheres were delineated using: (1) the exact boundaries based on their known diameters; (2) 40% fixed; and (3) adaptive threshold. Six textural features were derived from the gray level co-occurrence matrix (GLCM) using different quantization levels. The results indicate that homogeneity and dissimilarity are the most suitable for measuring PET tumor heterogeneity with quantization 64 provided that the segmentation method is robust to noise and contrast variations. To use these textural features as prognostic biomarkers, changes in textural features between baseline and treatment scans should always be reported along with the changes in volumes.

Corrigendum to: Integrated transcriptomics and metabolomics reveal induction of hierarchies of resistance genes in potato against late blight

2016 ◽  
Vol 43 (12) ◽  
pp. 1205 ◽  
Author(s):  
Kalenahalli N. Yogendra ◽  
Ajjamada C. Kushalappa
Keyword(s):  
Late Blight ◽  
Resistance Genes ◽  
Quantitative Resistance ◽  
Potato Production ◽  
Metabolic Reprogramming ◽  
Specific Gene ◽  
Molecular Events ◽  
Pathway Regulation ◽  
Molecular And Biochemical Mechanisms ◽  
Resistant Genotypes

Late blight caused by Phytophthora infestans is a devastating disease affecting potato production worldwide. The quantitative resistance is durable, but the underlying molecular and biochemical mechanisms are poorly understood, limiting its application in breeding. Integrated transcriptomics and metabolomics approach was used for the first time to study the hierarchies of molecular events occurring, following inoculation of resistant and susceptible potato genotypes with P. infestans. RNA sequencing revealed a total of 4216 genes that were differentially expressed in the resistant than in the susceptible genotype. Genes that were highly expressed and associated with their biosynthetic metabolites that were highly accumulated, through metabolic pathway regulation, were selected. Quantitative real-time PCR was performed to confirm the RNA-seq expression levels. The induced leucine-rich repeat receptor-like kinases (LRR-RLKs) are considered to be involved in pathogen recognition. These receptor genes are considered to trigger downstream oxidative burst, phytohormone signalling-related genes, and transcription factors that regulated the resistance genes to produce resistance related metabolites to suppress the pathogen infection. It was noted that several resistance genes in metabolic pathways related to phenylpropanoids, flavonoids, alkaloids and terpenoid biosynthesis were strongly induced in the resistant genotypes. The pathway specific gene induction provided key insights into the metabolic reprogramming of induced defence responses in resistant genotypes.

scholarly journals The leaf-feeding beetle, Cassida rubiginosa, has no impact on Carduus pycnocephalus (slender winged thistle) regardless of physical constraints on plant growth

2020 ◽  
Vol 73 ◽  
pp. 49-56
Author(s):  
Jonty Mills ◽  
Sarah Jackman ◽  
Chikako Van Koten ◽  
Michael Cripps
Keyword(s):  
New Zealand ◽  
Biocontrol Agents ◽  
Plant Performance ◽  
Feeding Damage ◽  
Physical Constraints ◽  
Pot Size ◽  
Californian Thistle ◽  
The Impact ◽  
Growth Constraint ◽  
Cassida Rubiginosa

The leaf-feeding beetle, Cassida rubiginosa, is an oligophagous biocontrol agent capable of feeding on most species in the tribe Cardueae (thistles and knapweeds). The beetle was released in New Zealand in 2007, primarily to control Cirsium arvense (Californian thistle), with the recognition that it had potential to control multiple thistle weeds. The objective of this study was to test the impact of different densities of Cassida rubiginosa larvae (0, 50, 100, or 200 per plant) on the growth and reproductive performance of the annual thistle weed, Carduus pycnocephalus (slender winged thistle). Since the effectiveness of biocontrol agents is often enhanced when plants are stressed, different levels of growth constraint were imposed by growing the weed in different pot sizes (0.5, 1, 5, and 12 litres). We hypothesised that feeding damage by Cassida rubiginosa larvae would have a greater impact on the weed when grown in smaller pots, since root growth would be constrained, and the weed’s ability to compensate for feeding damage would be restricted. Contrary to our hypothesis, pot size had no effect on feeding damage by Cassida rubiginosa on Carduus pycnocephalus. As expected, most measures of plant performance increased with larger pot sizes, including plant height, biomass, and the number of seedheads per plant. The results of this study indicate that Cassida rubiginosa is unlikely to contribute to the control of Carduus pycnocephalus. Additional oligophagous biocontrol agents targeting the rosette stage and seed production should be considered for release in New Zealand.

scholarly journals Assessing the effect of phenotyping scoring systems and SNP calling and filtering methods on detection of QTL associated with reaction of Brassica napus to Sclerotinia sclerotiorum

2021 ◽  
Author(s):  
Fereshteh Shahoveisi ◽  
Atena Oladzad ◽  
Luis E. del Rio Mendoza ◽  
Seyedali Hosseinirad ◽  
Susan Ruud ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Missing Data ◽  
Sclerotinia Sclerotiorum ◽  
Scoring Systems ◽  
Mortality Data ◽  
Lesion Length ◽  
Data Sets ◽  
Qtl Detection ◽  
Snp Calling ◽  
The Impact

The polyploid nature of canola (Brassica napus) represents a challenge for the accurate identification of single nucleotide polymorphisms (SNPs) and the detection of quantitative trait loci (QTL). In this study, combinations of eight phenotyping scoring systems and six SNP calling and filtering parameters were evaluated for their efficiency in detection of QTL associated with response to Sclerotinia stem rot, caused by Sclerotinia sclerotiorum, in two doubled haploid (DH) canola mapping populations. Most QTL were detected in lesion length, relative areas under the disease progress curve (rAUDPC) for lesion length, and binomial-plant mortality data sets. Binomial data derived from lesion size were less efficient in QTL detection. Inclusion of additional phenotypic sets to the analysis increased the numbers of significant QTL by 2.3-fold; however, the continuous data sets were more efficient. Between two filtering parameters used to analyze genotyping by sequencing (GBS) data, imputation of missing data increased QTL detection in one population with a high level of missing data but not in the other. Inclusion of segregation-distorted SNPs increased QTL detection but did not impact their R2 values significantly. Twelve of the 16 detected QTL were on chromosomes A02 and C01, and the rest were on A07, A09, and C03. Marker A02-7594120, associated with a QTL on chromosome A02 was detected in both populations. Results of this study suggest the impact of genotypic variant calling and filtering parameters may be population dependent while deriving additional phenotyping scoring systems such as rAUDPC datasets and mortality binary may improve QTL detection efficiency.

The Impact of a Video-Mediated Communication on Separated Perinatal Couples in Japan

2017 ◽  
Vol 29 (2) ◽  
pp. 202-211
Author(s):  
Ryoko Furukawa ◽  
Martha Driessnack ◽  
Eiko Kobori
Keyword(s):  
Visual Cues ◽  
Perinatal Period ◽  
Marital Relationships ◽  
Control Group ◽  
Strongly Correlated ◽  
Mediated Communication ◽  
Mixed Methods Approach ◽  
Data Collection And Analysis ◽  
Japanese Communication ◽  
The Impact

Japanese communication relies heavily on nonverbal cues and context. The purpose of this study was to examine the impact of video-mediated communication (VMC) on communication satisfaction and marital relationships in young couples separated during the perinatal period as they honor the Japanese tradition of Satogaeri Bunben. Couples were assigned to the VMC treatment group ( n = 14) or control group ( n = 13). A mixed-methods approach to data collection and analysis was used. Longitudinal quantitative analysis from the Primary Communication Inventory and Intimate Bond Measure revealed significant differences between the Husband groups. Primary Communication Inventory and Intimate Bond Measure were strongly correlated regardless of group. Qualitative analysis of participant diaries revealed the addition of visual cues helped create a sense of “virtual co-presence,” which was both positive and negative. In conclusion, VMC appears to improve communication in the separated Japanese perinatal couples, especially through the addition of visual cues provided with VMC.

scholarly journals Vegetation and Fluvial Geomorphology Dynamics after an Urban Fire

Geosciences ◽  
2020 ◽  
Vol 10 (8) ◽  
pp. 317
Author(s):  
Lauren E. H. Mathews ◽  
Alicia M. Kinoshita
Keyword(s):  
Laser Scanning ◽  
Small Sample Size ◽  
Arundo Donax ◽  
Small Sample ◽  
Giant Reed ◽  
Grass Species ◽  
Native Vegetation ◽  
Absolute Maximum ◽  
Field Observations ◽  
The Impact

The goal of this research was to characterize the impact of invasive riparian vegetation on burn severity patterns and fluvial topographic change in an urban Mediterranean riverine system (Med-sys) after fire in San Diego, California. We assessed standard post-fire metrics under urban conditions with non-native vegetation and utilized field observations to quantify vegetation and fluvial geomorphic processes. Field observations noted both high vegetation loss in the riparian area and rapidly resprouting invasive grass species such as Arundo donax (Giant Reed) after fire. Satellite-based metrics that represent vegetation biomass underestimated the initial green canopy loss, as did volumetric data derived from three-dimensional terrestrial laser scanning data. Field measurements were limited to a small sample size but demonstrated that the absolute maximum topographic changes were highest in stands of Arundo donax (0.18 to 0.67 m). This work is the first quantification of geomorphic alterations promoted by non-native vegetation after fire and highlights potential grass–fire feedbacks that can contribute to geomorphic disruption. Our results support the need for ground-truthing or higher resolution when using standard satellite-based indices to assess post-fire conditions in urban open spaces, especially when productive invasive vegetation are present, and they also emphasize restoring urban waterways to native vegetation conditions.

scholarly journals The Relationship between Severity of Hearing Loss and Subjective Tinnitus Loudness among Patients Seen in a Specialist Tinnitus and Hyperacusis Therapy Clinic in UK

2019 ◽  
Vol 30 (08) ◽  
pp. 712-719 ◽  
Author(s):  
Hashir Aazh ◽  
Richard Salvi
Keyword(s):  
Hearing Loss ◽  
Regression Model ◽  
Pure Tone ◽  
Cross Sectional Study ◽  
Emotional Disturbances ◽  
Self Report ◽  
Strongly Correlated ◽  
Cross Sectional ◽  
The Impact ◽  
The Relationship

AbstractHearing loss is often associated with the phantom sound of tinnitus. However, the degree of the association between severity of hearing loss and tinnitus loudness taking into account the impact of other variables (e.g., emotional disturbances) is not fully understood. This is an important question for audiologists who are specialized in tinnitus rehabilitation as patients often ask whether the loudness of their tinnitus will increase if their hearing gets worse.To explore the relationship between tinnitus loudness and pure tone hearing thresholds.This was a retrospective cross-sectional study.445 consecutive patients who attended a Tinnitus and Hyperacusis Therapy Specialist Clinic in UK were included.The results of audiological tests and self-report questionnaires were gathered retrospectively from the records of the patients. Multiple-regression analysis was used to assess the relationship between tinnitus loudness, hearing loss and other variables.The regression model showed a significant relationship between the pure tone average (PTA) at the frequencies 0.25, 0.5, 1, 2, and 4 kHz of the better ear and the tinnitus loudness as measured via visual analogue scale (VAS), r (regression coefficient) = 0.022 (p < 0.001). Other variables significantly associated with tinnitus loudness were tinnitus annoyance (r = 0.49, p < 0.001) and the effect of tinnitus on life (r = 0.09, p = 0.006). The regression model explained 52% of the variance of tinnitus loudness.Although increased tinnitus loudness was associated with worse PTA, the relationship was very weak. Tinnitus annoyance and impact of tinnitus on life were more strongly correlated with tinnitus loudness than PTA.

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