scholarly journals Marker-assisted selection: an approach for precision plant breeding in the twenty-first century

2007 ◽  
Vol 363 (1491) ◽  
pp. 557-572 ◽  
Author(s):  
Bertrand C.Y Collard ◽  
David J Mackill

DNA markers have enormous potential to improve the efficiency and precision of conventional plant breeding via marker-assisted selection (MAS). The large number of quantitative trait loci (QTLs) mapping studies for diverse crops species have provided an abundance of DNA marker–trait associations. In this review, we present an overview of the advantages of MAS and its most widely used applications in plant breeding, providing examples from cereal crops. We also consider reasons why MAS has had only a small impact on plant breeding so far and suggest ways in which the potential of MAS can be realized. Finally, we discuss reasons why the greater adoption of MAS in the future is inevitable, although the extent of its use will depend on available resources, especially for orphan crops, and may be delayed in less-developed countries. Achieving a substantial impact on crop improvement by MAS represents the great challenge for agricultural scientists in the next few decades.

2020 ◽  
Author(s):  
Gayatri Kumawat ◽  
Chander Kanta Kumawat ◽  
Kailash Chandra ◽  
Saurabh Pandey ◽  
Subhash Chand ◽  
...  

Burgeoning the human population with its required food demand created a burden on ever-decreasing cultivated land and our food production systems. This situation prompted plant scientists to breed crops in a short duration with specific traits. Marker-assisted selection (MAS) has emerged as a potential tool to achieve desirable results in plants with the help of molecular markers and improves the traits of interest in a short duration. The MAS has comprehensively been used in plant breeding to characterize germplasm, diversity analysis, trait stacking, gene pyramiding, multi-trait introgression, and genetic purity of different cereals, pulses, oilseeds, and fiber crops, etc. Mapping studies pointed out several marker-trait associations from different crop species, which specifies the potential application of MAS in accelerating crop improvement. This chapter presents an overview of molecular markers, their genesis, and potential use in plant breeding.


2021 ◽  
Vol 22 (11) ◽  
pp. 5585
Author(s):  
Sajid Fiaz ◽  
Sunny Ahmar ◽  
Sajjad Saeed ◽  
Aamir Riaz ◽  
Freddy Mora-Poblete ◽  
...  

A world with zero hunger is possible only through a sustainable increase in food production and distribution and the elimination of poverty. Scientific, logistical, and humanitarian approaches must be employed simultaneously to ensure food security, starting with farmers and breeders and extending to policy makers and governments. The current agricultural production system is facing the challenge of sustainably increasing grain quality and yield and enhancing resistance to biotic and abiotic stress under the intensifying pressure of climate change. Under present circumstances, conventional breeding techniques are not sufficient. Innovation in plant breeding is critical in managing agricultural challenges and achieving sustainable crop production. Novel plant breeding techniques, involving a series of developments from genome editing techniques to speed breeding and the integration of omics technology, offer relevant, versatile, cost-effective, and less time-consuming ways of achieving precision in plant breeding. Opportunities to edit agriculturally significant genes now exist as a result of new genome editing techniques. These range from random (physical and chemical mutagens) to non-random meganucleases (MegaN), zinc finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs), clustered regularly interspaced short palindromic repeats (CRISPR)/associated protein system 9 (CRISPR/Cas9), the CRISPR system from Prevotella and Francisella1 (Cpf1), base editing (BE), and prime editing (PE). Genome editing techniques that promote crop improvement through hybrid seed production, induced apomixis, and resistance to biotic and abiotic stress are prioritized when selecting for genetic gain in a restricted timeframe. The novel CRISPR-associated protein system 9 variants, namely BE and PE, can generate transgene-free plants with more frequency and are therefore being used for knocking out of genes of interest. We provide a comprehensive review of the evolution of genome editing technologies, especially the application of the third-generation genome editing technologies to achieve various plant breeding objectives within the regulatory regimes adopted by various countries. Future development and the optimization of forward and reverse genetics to achieve food security are evaluated.


OCL ◽  
2018 ◽  
Vol 25 (6) ◽  
pp. D606 ◽  
Author(s):  
Patrick Vincourt ◽  
Pierre Carolo

The Participatory Plant Breeding (PPB) concept emerged twenty years ago, particularly with the aim to build alternative organizations of the plant breeding activities in developing countries. It now as well questions the developed countries, in the frame of a more global expectation to make all the stakeholders more involved in the agricultural production, from the farmers to its final clients. We discuss here some of the questions addressed by this trend with regard to the definition of the ideotype: (a) different forms of PPB? (b) changing the paradigm: Client Oriented Breeding? (c) a new way to manage {genotype * environment} interactions? (d) mainly societal concerns at stake? (e) biodiversity and ideotypes. As the same key, technical, limiting factors are involved in both PPB and classical breeding, it is suggested to consider PPB as one of the ways in the frame of a general expectation for diversification, thus eventually resulting in the promotion of alternative ideotypes, rather than an alternative process.


1970 ◽  
Vol 2 (1) ◽  
pp. 72-89
Author(s):  
Umesh R Rosyara ◽  
Bal K Joshi

DNA-based molecular markers have been extensively utilized for mapping of genes and quantitative trait loci (QTL) of interest based on linkage analysis in mapping populations. This is in contrast to human genetics that use of linkage disequilibrium (LD)-based mapping for fine mapping of QTLs using single nucleotide polymorphisms. LD based association mapping (AM) has promise to be used in plants. Possible use of such approach may be for fine mapping of genes / QTLs, identifying favorable alleles for marker aided selection and cross validation of results from linkage mapping for precise location of genes / QTLs of interest. In the present review, we discuss different mapping populations, approaches, prospects and limitations of using association mapping in plant breeding populations. This is expected to create awareness in plant breeders in use of AM in crop improvement activities.Key words: Association mapping; plant breeding; DNA marker; quantitative trait lociDOI: http://dx.doi.org/10.3126/njb.v2i1.5686  Nepal Journal of Biotechnology Jan.2012, Vol.2(1): 72-89


Plants ◽  
2021 ◽  
Vol 10 (10) ◽  
pp. 2017
Author(s):  
Ferdoushi Rahaman ◽  
Abdul Shukor Juraimi ◽  
Mohd Y. Rafii ◽  
Md. Kamal Uddin ◽  
Lutful Hassan ◽  
...  

Rice has been subjected to a great deal of stress during its brief existence, but it nevertheless ranked first among cereal crops in terms of demand and productivity. Weeds are characterized as one of the major biotic stresses by many researchers. This research aims to determine the most potential allelopathic rice variety among selected rice accessions. For obtaining preeminent varieties, seventeen rice genotypes were collected from Bangladesh and Malaysia. Two prevalent procedures, relay seeding and the sandwich technique were employed to screen the seventeen rice (donor) accessions against barnyard grass (tested plant). In both approaches, only the BR17 variety demonstrated substantial inhibition of germination percentage, root length, and dry matter of barnyard grass. The rice variety BR17 exclusively took the zenith position, and it inhibited the development of barnyard grass by more than 40–41% on an average. BR17 is originated from KN-1B-361-1-8-6-10 (Indonesia) and developed by the Bangladesh Rice Research Institute (BRRI), Gazipur, Bangladesh in 1985, having a high yielding capacity of more than 6 t/ha. Our study suggested that the usage of the allelopathy-weed inverse relationship to treat the weed problem can be a fantastic choice in the twenty-first century.


2015 ◽  
pp. 65-88 ◽  
Author(s):  
P. Kadirvel ◽  
S. Senthilvel ◽  
S. Geethanjali ◽  
M. Sujatha ◽  
K. S. Varaprasad

Author(s):  
Penna Suprasanna

Abstract The basic tenet of crop improvement is the novel genetic variability that is achieved through selection, hybridization, mutation and recombination. The new technological innovations of plant breeding offer scope for transforming crop improvement with more precision and resolution. Advances in genomic-based tools and high-throughput phenotyping have enabled the analysis of genetic variation and identification of molecular signatures of agronomic traits. Molecular markers and molecular-marker-assisted breeding have facilitated the speedy selection of new, novel genetic combinations in breeding for high-yielding, stress-tolerant and nutritionally enriched crops. Transgenic methods have revolutionized modification for stress tolerance and higher productivity, and several genetically modified crops are under cultivation. Availability of genome sequencing platforms and genomic resources has significantly contributed to accessing novel genes and validating their functions. Genome-editing tools and recent advances of prime editing are now accessible for precise genetic alteration of plant traits. The new plant breeding tools will certainly foster development of highly productive, improved crop varieties for achieving food security and climate resilience.


Traditional plant breeding depends on spontaneous and induced mutations available in the crop plants. Such mutations are rare and occur randomly. By contrast, molecular breeding and genome editing are advanced breeding techniques that can enhance the selection process and produce precisely targeted modifications in any crop. Identification of molecular markers, based on SSRs and SNPs, and the availability of high-throughput (HTP) genotyping platforms have accelerated the process of generating dense genetic linkage maps and thereby enhanced application of marker-assisted breeding for crop improvement. Advanced molecular biology techniques that facilitate precise, efficient, and targeted modifications at genomic loci are termed as “genome editing.” The genome editing tools include “zinc-finger nucleases (ZNFs),” “transcription activator-like effector nucleases (TALENs),” oligonucleotide-directed mutagenesis (ODM), and “clustered regularly interspersed short palindromic repeats (CRISPER/Cas) system,” which can be used for targeted gene editing. Concepts of molecular plant breeding and genome editing systems are presented in this chapter.


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