scholarly journals Genomic and metabolic adaptations of biofilms to ecological windows of opportunities in glacier-fed streams

2021 ◽  
Author(s):  
Susheel Bhanu Busi ◽  
Massimo Bourquin ◽  
Stilianos Fodelianakis ◽  
Grégoire Michoud ◽  
Tyler J. Kohler ◽  
...  
Keyword(s):  
Low Temperatures ◽  
Selective Pressure ◽  
Ecosystem Processes ◽  
Phylogenomic Analysis ◽  
Adaptive Traits ◽  
Energy Capture ◽  
Microbial Biofilms ◽  
Windows Of Opportunity ◽  
Metabolic Adaptations

AbstractMicroorganisms dominate life in cryospheric ecosystems. In glacier-fed streams (GFSs), ecological windows of opportunities allow complex microbial biofilms to develop and transiently form the basis of the food web, thereby controlling key ecosystem processes. Here, using high-resolution metagenomics, we unravel strategies that allow biofilms to seize this opportunity in an ecosystem otherwise characterized by harsh environmental conditions. We found a diverse microbiome spanning the entire tree of life and including a rich virome. Various and co-existing energy acquisition pathways point to diverse niches and the simultaneous exploitation of available resources, likely fostering the establishment of complex biofilms in GFSs during windows of opportunity. The wide occurrence of rhodopsins across metagenome-assembled genomes (MAGs), besides chlorophyll, highlights the role of solar energy capture in these biofilms. Concomitantly, internal carbon and nutrient cycling between photoautotrophs and heterotrophs may help overcome constraints imposed by the high oligotrophy in GFSs. MAGs also revealed mechanisms potentially protecting bacteria against low temperatures and high UV-radiation. The selective pressure of the GFS environment is further highlighted by the phylogenomic analysis, differentiating the representatives of the genus Polaromonas, an important component of the GFS microbiome, from those found in other ecosystems. Our findings reveal key genomic underpinnings of adaptive traits that contribute to the success of complex biofilms to exploit environmental opportunities in GFSs, now rapidly changing owing to global warming.

The Role of Zinc in Thyroid Hormones Metabolism

2019 ◽  
Vol 89 (1-2) ◽  
pp. 80-88 ◽  
Author(s):  
Juliana Soares Severo ◽  
Jennifer Beatriz Silva Morais ◽  
Taynáh Emannuelle Coelho de Freitas ◽  
Ana Letícia Pereira Andrade ◽  
Mayara Monte Feitosa ◽  
...  
Keyword(s):  
Thyroid Hormones ◽  
Scientific Evidence ◽  
Thyroid Stimulating Hormone ◽  
Zinc Transporters ◽  
Serum Concentrations ◽  
Metabolic Adaptations ◽  
Serum T3 ◽  
Regulatory Effects ◽  
Shed Light

Abstract. Thyroid hormones play an important role in body homeostasis by facilitating metabolism of lipids and glucose, regulating metabolic adaptations, responding to changes in energy intake, and controlling thermogenesis. Proper metabolism and action of these hormones requires the participation of various nutrients. Among them is zinc, whose interaction with thyroid hormones is complex. It is known to regulate both the synthesis and mechanism of action of these hormones. In the present review, we aim to shed light on the regulatory effects of zinc on thyroid hormones. Scientific evidence shows that zinc plays a key role in the metabolism of thyroid hormones, specifically by regulating deiodinases enzymes activity, thyrotropin releasing hormone (TRH) and thyroid stimulating hormone (TSH) synthesis, as well as by modulating the structures of essential transcription factors involved in the synthesis of thyroid hormones. Serum concentrations of zinc also appear to influence the levels of serum T3, T4 and TSH. In addition, studies have shown that Zinc transporters (ZnTs) are present in the hypothalamus, pituitary and thyroid, but their functions remain unknown. Therefore, it is important to further investigate the roles of zinc in regulation of thyroid hormones metabolism, and their importance in the treatment of several diseases associated with thyroid gland dysfunction.

The Role of the Initiator System in the Synthesis of Acidic Multifunctional Nanoparticles Designed for Molecular Imprinting of Proteins

2020 ◽  
Vol 65 (1) ◽  
pp. 28-41
Author(s):  
Marwa Aly Ahmed ◽  
Júlia Erdőssy ◽  
Viola Horváth
Keyword(s):  
Acrylic Acid ◽  
Binding Affinity ◽  
Molecular Imprinting ◽  
Low Temperatures ◽  
Ammonium Persulfate ◽  
Sodium Bisulfite ◽  
Multifunctional Nanoparticles ◽  
High Affinity ◽  
Initiator System

Multifunctional nanoparticles have been shown earlier to bind certain proteins with high affinity and the binding affinity could be enhanced by molecular imprinting of the target protein. In this work different initiator systems were used and compared during the synthesis of poly (N-isopropylacrylamide-co-acrylic acid-co-N-tert-butylacrylamide) nanoparticles with respect to their future applicability in molecular imprinting of lysozyme. The decomposition of ammonium persulfate initiator was initiated either thermally at 60 °C or by using redox activators, namely tetramethylethylenediamine or sodium bisulfite at low temperatures. Morphology differences in the resulting nanoparticles have been revealed using scanning electron microscopy and dynamic light scattering. During polymerization the conversion of each monomer was followed in time. Striking differences were demonstrated in the incorporation rate of acrylic acid between the tetramethylethylenediamine catalyzed initiation and the other systems. This led to a completely different nanoparticle microstructure the consequence of which was the distinctly lower lysozyme binding affinity. On the contrary, the use of sodium bisulfite activation resulted in similar nanoparticle structural homogeneity and protein binding affinity as the thermal initiation.

Microbial Biofilms and Biotechnology – Some Perceptions

2020 ◽  
Vol 09 ◽  
Author(s):  
Subba Rao Toleti
Keyword(s):  
Tissue Culture ◽  
Synthetic Biology ◽  
Industrial Effluents ◽  
Aquatic Environments ◽  
Biochemical Processes ◽  
Microbial Biofilms ◽  
Biofilm Bacteria ◽  
Prophylactic Vaccines ◽  
Design Construction

: The review is an attempt to introduce the readers in brief about biofilms and their implications as well as some new perceptions in biotechnology. Biofilms are adherent microbial communities, which are developed on submerged surfaces in aquatic environments. Biofilms play a significant role in exopolymer production, material deterioration and also cause harmful infections. Further, the role of corrosion causing biofilm bacteria in deterioration of different materials, microbial biofilms and their enzymatic processes in reducing the toxicity of pollutants in industrial effluents are elaborated, along with clean technologies for wastewater treatment. Biotechnology is defined as any technological application that uses biological systems to synthesize or modify products or processes. The applications include biochemical processes, medical care, cell and tissue culture as well as synthetic biology and others. Synthetic biology details about the design, construction of new biological components and systems for useful purposes. Finally, to overcome the limitations that are inherent to the use of cellular host’s, cell-free systems as critical platforms for synthetic biology applications. This mini-review also mentions about new diagnostic products based on enzymes, monoclonal antibodies and engineered proteins as well as novel prophylactic vaccines.

First comparison of quantitative estimates of termite biomass and abundance reveals strong intercontinental differences

2014 ◽  
Vol 30 (2) ◽  
pp. 143-152 ◽  
Author(s):  
Cecilia A.L. Dahlsjö ◽  
Catherine L. Parr ◽  
Yadvinder Malhi ◽  
Homathevi Rahman ◽  
Patrick Meir ◽  
...  
Keyword(s):  
Functional Groups ◽  
Functional Diversity ◽  
Ecosystem Processes ◽  
Global Scale ◽  
Species Density ◽  
Abundance Data ◽  
Standardized Protocol ◽  
Biogeographical Distribution ◽  
Belt Transect

Abstract:Termite species and functional groups differ among regions globally (the functional-diversity anomaly). Here we investigate whether similar differences in biomass and abundance of termites occur among continents. Biomass and abundance data were collected with standardized sampling in Cameroon, Malaysia and Peru. Data from Peru were original to this study, while data from Cameroon and Malaysia were compiled from other sources. Species density data were sampled using a standardized belt transect (100 × 2 m) while the biomass and abundance measurements were sampled using a standardized protocol based on 2 × 2-m quadrats. Biomass and abundance data confirmed patterns found for species density and thus the existence of the functional diversity anomaly: highest estimates for biomass and abundance were found in Cameroon (14.5 ± 7.90 g m−2 and 1234 ± 437 ind m−2) followed by Malaysia (0.719 ± 0.193 g m−2 and 327 ± 72 ind m−2) and then Peru (0.345 ± 0.103 g m−2 and 130 ± 39 ind m−2). The biomass and abundance for each functional group were significantly different across sites for most termite functional groups. Biogeographical distribution of lineages was the primary cause for the functional diversity anomaly with true soil-feeding termites dominating in Cameroon and the absence of fungus-growing termites from Peru. These findings are important as the biomass and abundance of functional groups may be linked to ecosystem processes. Although this study allowed for comparisons between data from different regions further comparable data are needed to enhance the understanding of the role of termites in ecosystem processes on a global scale.

scholarly journals Cognition and the evolution of camouflage

2016 ◽  
Vol 283 (1825) ◽  
pp. 20152890 ◽  
Author(s):  
John Skelhorn ◽  
Candy Rowe
Keyword(s):  
Cognitive Processes ◽  
Selective Pressure ◽  
Animal Cognition ◽  
Future Research ◽  
Ecological Context ◽  
The Past ◽  
Camouflage Patterns ◽  
Predator Defence

Camouflage is one of the most widespread forms of anti-predator defence and prevents prey individuals from being detected or correctly recognized by would-be predators. Over the past decade, there has been a resurgence of interest in both the evolution of prey camouflage patterns, and in understanding animal cognition in a more ecological context. However, these fields rarely collide, and the role of cognition in the evolution of camouflage is poorly understood. Here, we review what we currently know about the role of both predator and prey cognition in the evolution of prey camouflage, outline why cognition may be an important selective pressure driving the evolution of camouflage and consider how studying the cognitive processes of animals may prove to be a useful tool to study the evolution of camouflage, and vice versa. In doing so, we highlight that we still have a lot to learn about the role of cognition in the evolution of camouflage and identify a number of avenues for future research.

The role of Pt in α-MoC on the water-gas shift reaction at low temperatures

Joule ◽  
2021 ◽  
Vol 5 (3) ◽  
pp. 521-523
Author(s):  
Tiago J. Goncalves ◽  
Samira Siahrostami
Keyword(s):  
Low Temperatures ◽  
Water Gas Shift ◽  
Water Gas Shift Reaction ◽  
Shift Reaction ◽  
Water Gas

scholarly journals Adaptation of Newcastle Disease Virus (NDV) in Feral Birds and their Potential Role in Interspecies Transmission

2018 ◽  
Vol 12 (1) ◽  
pp. 52-68 ◽  
Author(s):  
Aziz-ul- Rahman ◽  
Momena Habib ◽  
Muhammad Zubair Shabbir
Keyword(s):  
Newcastle Disease ◽  
Potential Role ◽  
Vital Role ◽  
Wild Birds ◽  
Avian Species ◽  
Phylogenomic Analysis ◽  
Susceptible Host ◽  
Domestic Poultry ◽  
Wide Range

Introduction:Newcastle Disease (ND), caused by Avian avulavirus 1 (AAvV 1, avulaviruses), is a notifiable disease throughout the world due to the economic impact on trading restrictions and its embargoes placed in endemic regions. The feral birds including aquatic/migratory birds and other wild birds may act as natural reservoir hosts of ND Viruses (NDVs) and may play a remarkable role in the spread of the virus in environment. In addition, other 19 avulaviruses namely: AAvV 2 to 20, have been potentially recognized from feral avian species.Expalantion:Many previous studies have investigated the field prevailing NDVs to adapt a wide range of susceptible host. Still the available data is not enough to declare the potential role of feral birds in transmission of the virus to poultry and/or other avian birds. In view of the latest evidence related to incidences of AAvVs in susceptible avian species, it is increasingly important to understand the potential of viruses to transmit within the domestic poultry and other avian hosts. Genomic and phylogenomic analysis of several investigations has shown the same (RK/RQRR↓F) motif cleavage site among NDV isolates with same genotypes from domestic poultry and other wild hosts. So, the insight of this, various semi-captive/free-ranging wild avian species could play a vital role in the dissemination of the virus, which is an important consideration to control the disease outbreaks. Insufficient data on AAvV 1 transmission from wild birds to poultry and vice versa is the main constraint to understand about its molecular biology and genomic potential to cause infection in all susceptible hosts.Conclusion:The current review details the pertinent features of several historical and contemporary aspects of NDVs and the vital role of feral birds in its molecular epidemiology and ecology.

scholarly journals ACCUMULATION BEHAVIOUR OF ALLANTOIN IN THE UNDERGROUND PHYTOMASS OF THE BORAGINACEAE FAMILY AND ITS ROLE IN ADAPTING THE PLANTS TO ADVERSE ENVIRONMENTAL FACTORS

2019 ◽  
Vol 14 (1) ◽  
pp. 126-136
Author(s):  
A. Ya. Tamakhina ◽  
A. A. Akhkubekova ◽  
A. B. Ittiev
Keyword(s):  
Solar Radiation ◽  
Sea Level ◽  
Low Temperatures ◽  
High Performance ◽  
Growing Season ◽  
Stress Factors ◽  
Adaptation To Stress ◽  
Plant Adaptation ◽  
The Family

Aim.The aim of the work described herein was to study the dynamics of allantoin accumulation in the underground phytomass ofEchium vulgareL.,Symphytum caucasicumM. Bieb. andS. asperumLepech. as well as to clarify the role of allantoin in plant adaptation to stress factors.Methods.We studied the roots of plants growing in the foothill (Nalchik, 490–512 m above sea level) and the mountain zones of the Kabardino-Balkarian Republic (Terskol village, 2530 m above sea level; Verkhnyaya Balkaria village, 2680 m above sea level). The roots were collected at the stages of rosetting, flowering, fruiting and at the end of the growing season. Aqueous-alcoholic extracts of shredded roots were analyzed by high-performance liquid chromatography.Results.The highest content of allantoin in the roots ofEchium vulgare,Symphytum caucasicum,S. asperumplants was noted at the end of the growing season, respectively 0.915; 0.342–0.658; 2,842–3,426%. Under conditions of low temperatures and increased solar radiation, the content of allantoin in the roots increases 1.2–1.9 times as compared with the plants of the foothill zone.Conclusion.Allantoin plays an important role in the process of adapting species of the family Boraginaceae to oxidative stress caused by hypothermia and increased solar radiation.

Effect of temperature on transition and transversion mutagenesis: characterization of wild type and a mutator T4 DNA polymerase mutant

1984 ◽  
Vol 26 (3) ◽  
pp. 386-389 ◽  
Author(s):  
Linda J. Reha-Krantz ◽  
Sükran Parmaksizoglu
Keyword(s):  
Dna Polymerase ◽  
Low Temperatures ◽  
Bacteriophage T4 ◽  
Effect Of Temperature ◽  
In Vitro Mutagenesis ◽  
Wild Type ◽  
Mutational Site

The effect of temperature on genetically well-defined mutational pathways was examined in the bacteriophage T4. The mutational site was a T4 rII ochre mutant which could revert to rII+ via a transversion or to the amber convertant via a transition. Temperature did not strongly affect any of the pathways examined in a wild-type background; however, increased temperature reduced the mutational activity of a mutator DNA polymerase mutant. Possible models to explain the role of temperature in mutagenesis are discussed as well as the significance of low temperatures for in vitro mutagenesis reactions.Key words: bacteriophage T4, mutator, transition, transversion, temperature effects.

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