scholarly journals The abiotic and biotic environment together predict plant, mammal, and bird diversity and turnover across the United States

2021 ◽  
Author(s):  
Amanda S Gallinat ◽  
William D Pearse

The distribution of taxonomic, phylogenetic, and functional biodiversity results from a combination of abiotic and biotic drivers which are scale dependent. Parsing the relative influence of these drivers is critical to understanding the processes underlying species assembly and generating predictions of biodiversity across taxonomic groups and for novel sites. However, doing so requires data that capture a spatial extent large enough to reflect broad-scale dynamics such as speciation and biogeography, and a spatial grain fine enough to detect local-scale dynamics like environmental filtering and biotic interactions. We used species inventories of vascular plants, birds, and mammals collected by the U.S. National Ecological Observatory Network (NEON) at 38 terrestrial field sites, to explore the processes underlying taxonomic, phylogenetic, and functional diversity and turnover. We found that, for both species richness (alpha-diversity) and turnover (beta-diversity), taxonomic, phylogenetic, and functional diversity are weak proxies for one-another, and thus may capture different species assembly processes. All diversity metrics were best predicted by a combination of abiotic and biotic variables. Taxonomic and phylogenetic richness tended to be higher at warmer, wetter sites, reflecting the role energy inputs play in driving broad-scale diversity. However, plant diversity was negatively correlated with bird phylogenetic and mammal functional diversity, implying trait conservation in plant communities may limit niche availability for consumer species. Equally, turnover in bird and mammal species across sites were associated with plant turnover. That the biodiversity of one taxon is predictive of another across these North American sites, even when controlling for environment, supports a role for the cross-clade biotic environment in driving species assembly.

Ecology ◽  
2021 ◽  
Author(s):  
Jani Heino ◽  
Luis Mauricio Bini

In the last two decades, community ecology has matured to consider biotic communities as a product of both local and regional processes. Therefore, local communities are currently thought to be connected by the dispersal of organisms, thereby forming a metacommunity. A metacommunity is organized by multiple processes, including environmental filtering, biotic interactions, dispersal, and ecological drift. Thus, spatial variations in local diversity (i.e., alpha diversity) and community composition (i.e., beta diversity) result from the relative roles of these major processes. In turn, these processes are mediated by organisms’ characteristics, environmental heterogeneity, and the connectivity between localities in a metacommunity. For a given environmental gradient, the role of environmental filtering is likely to be dependent on the dispersal rates shown by organisms. Unsuitable habitat patches (i.e., sinks), in terms of biotic and abiotic characteristics, may be occupied by different species due to high dispersal rates from suitable habitat patches (i.e., sources). Thus, mass effects occur when species are established at localities where their populations cannot be self-maintained. Even though it may be difficult to prove the action of mass effects per se, given the complex interactions between different mechanisms shaping biotic communities, there is some empirical evidence supporting their importance in nature. In addition, high dispersal rates that lead to mass effects may have important implications for biomonitoring and biodiversity conservation. This is because species occurring at sites beyond their niche requirements may provide false information about a site’s ecological quality or result in misleading plans to conserve species at sites where they cannot persist in the absence of continuous influx of propagules.


2013 ◽  
Vol 24 (5) ◽  
pp. 853-864 ◽  
Author(s):  
L. Chalmandrier ◽  
T. Münkemüller ◽  
L. Gallien ◽  
F. de Bello ◽  
F. Mazel ◽  
...  

2021 ◽  
Vol 53 (1) ◽  
pp. 3-19
Author(s):  
Robert Lücking

AbstractPeter D. Crittenden served as senior editor of The Lichenologist, the flagship journal in the field of lichenological research, for a period of two decades, between 2000 and 2019. A review of the development of the journal and the publication output during this period is provided. The number of papers published during this period (1197) matches that of all papers published under the three previous senior editors, Peter W. James, David L. Hawksworth and Dennis H. Brown, during a much longer period of 42 years from 1958 to 1999. Peter oversaw important editorial changes to the layout and content of the journal: an increased size with a modern cover design, leaving behind the classic mint-coloured cover of more than 40 years; the addition of ‘thematic issues’ and encouragement of large monographs; implementation of substantial changes to the Code, such as effective electronic publication and obligate registration of new fungal names; and more recently a new policy to reject so-called ‘single naked species descriptions’. Shortly before Peter took over as senior editor, The Lichenologist had received its first impact factor, and Peter managed to continuously increase this measure from around 0.9 to lately up to over 1.5, higher than most other competing journals. The 1197 papers between 2000 and 2019 were published by a total of 1138 different authors, more than half of whom appeared just once as author, whereas a small number participated in numerous (up to 93) papers. There was a continuous increase in the mean number of authors per paper per year, from below 2.5 to around 3.5, the highest numbers ranging between 11 and 30; still, c. 75% of all papers between 2000 and 2019 were single-authored or had up to three authors. Based on affiliations at the time of publication, two thirds of author contributions came from Europe (66%), 13% from North America, 9% from Asia and 7% from Latin America. Likewise, almost half of the study areas were located in Europe and around 10% each in North America, South America and Asia. The countries with the highest number of studies included, in descending order, the United States, Spain, the United Kingdom, Norway and Sweden. North America and Europe were over-represented in terms of author contributions, whereas Africa, Latin America, Australia and Oceania were over-represented in terms of study areas. The 1197 papers analyzed encompassed a broad diversity of topics, classified into 32 categories. Taxonomy of lichenized fungi was the most frequent component, representing the focal point in almost half of all studies, followed by phylogeny and evolution, ecology, and the taxonomy of lichenicolous fungi. Around two thirds of the currently accepted genera of lichenized fungi were treated, with a significant correlation between known species richness and the number of papers in which a genus was treated, underlining the taxonomic representativity of papers published in the journal during the past two decades. Examples of genera that were treated more frequently than expected included commonly studied model organisms, such as Lobaria, and those frequently featured in ecological or other non-taxonomic studies, such as Xanthoria. Species-rich tropical genera, particularly in the Graphidaceae, were generally under-represented. Mean number of authors per paper per volume and total number of country origins of authors per volume were the best predictors of impact factor, followed by diversity of study countries per volume, mean number of study countries per paper per volume, mean number of topics per paper per volume, and proportion of studies with phylogenetic components per volume. Individual papers that contributed to high impact factors included broad-scale revisionary treatments and worldwide keys to species-rich taxa, substantial phylogenetic reclassifications of known taxonomic groups, papers dealing with novel methodological approaches of broad interest, and broad-scale studies related to environmental change and lichen biomonitoring.


2021 ◽  
Author(s):  
Michaeline B. N. Albright ◽  
Stilianos Louca ◽  
Daniel E. Winkler ◽  
Kelli L. Feeser ◽  
Sarah-Jane Haig ◽  
...  

AbstractMicrobiome engineering is increasingly being employed as a solution to challenges in health, agriculture, and climate. Often manipulation involves inoculation of new microbes designed to improve function into a preexisting microbial community. Despite, increased efforts in microbiome engineering inoculants frequently fail to establish and/or confer long-lasting modifications on ecosystem function. We posit that one underlying cause of these shortfalls is the failure to consider barriers to organism establishment. This is a key challenge and focus of macroecology research, specifically invasion biology and restoration ecology. We adopt a framework from invasion biology that summarizes establishment barriers in three categories: (1) propagule pressure, (2) environmental filtering, and (3) biotic interactions factors. We suggest that biotic interactions is the most neglected factor in microbiome engineering research, and we recommend a number of actions to accelerate engineering solutions.


2021 ◽  
Vol 27 (2) ◽  
pp. 253-279
Author(s):  
Lindsay Zafir

This article examines the gay French author Jean Genet’s 1970 tour of the United States with the Black Panther Party, using Genet’s unusual relationship with the Panthers as a lens for analyzing the possibilities and pitfalls of radical coalition politics in the long sixties. I rely on mainstream and alternative media coverage of the tour, articles by Black Panthers and gay liberationists, and Genet’s own writings and interviews to argue that Genet’s connection with the Panthers provided a queer bridge between the Black Power and gay liberation movements. Their story challenges the neglect of such coalitions by historians of the decade and illuminates some of the reasons the Panthers decided to support gay liberation. At the same time, Genet distanced himself from the gay liberation movement, and his unusual connection with the Panthers highlights some of the difficulties activists faced in building and sustaining such alliances on a broad scale.


2019 ◽  
Vol 4 (2) ◽  
pp. 75-83
Author(s):  
Federico Morelli ◽  
Zbigniew Kwieciński ◽  
Piotr Indykiewicz ◽  
Łukasz Jankowiak ◽  
Paweł Szymański ◽  
...  

Abstract Farmland landscapes are recognized as important ecosystems, not only for their rich biodiversity but equally so for the human beings who live and work in these places. However, biodiversity varies among sites (spatial change) and among seasons (temporal change). In this work, we tested the hypothesis that bird diversity hotspots distribution for breeding is congruent with bird diversity hotspots for wintering season, focusing also the representation of protected areas for the conservation of local hotspots. We proposed a framework based on the use of species richness, functional diversity, and evolutionary distinctiveness to characterize avian communities. Although our findings show that the spatial distribution of local bird hotspots differed slightly between seasons, the protected areas’ representation was similar in both seasons. Protected areas covered 65% of the most important zones for breeding and 71% for the wintering season in the farmland studied. Functional diversity showed similar patterns as did bird species richness, but this measure can be most effective for highlighting differences on bird community composition. Evolutionary distinctiveness was less congruent with species richness and functional diversity, among seasons. Our findings suggest that inter-seasonal spatial congruence of local hotspots can be considered as suitable areas upon which to concentrate greater conservation efforts. However, even considering the relative congruence of avian diversity metrics at a local spatial scale, simultaneous analysis of protected areas while inter-seasonally considering hotspots, can provide a more complete representation of ecosystems for assessing the conservation status and designating priority areas.


PeerJ ◽  
2016 ◽  
Vol 4 ◽  
pp. e2039 ◽  
Author(s):  
Marcela Suarez-Rubio ◽  
Todd R. Lookingbill

Housing development beyond the urban fringe (i.e., exurban development) is one of the fastest growing forms of land-use change in the United States. Exurban development’s attraction to natural and recreational amenities has raised concerns for conservation and represents a potential threat to wildlife. Although forest-dependent species have been found particularly sensitive to low housing densities, it is unclear how the spatial distribution of houses affects forest birds. The aim of this study was to assess forest bird responses to changes in the spatial pattern of exurban development and also to examine species responses when forest loss and forest fragmentation were considered. We evaluated landscape composition around North American Breeding Bird Survey stops between 1986 and 2009 by developing a compactness index to assess changes in the spatial pattern of exurban development over time. Compactness was defined as a measure of how clustered exurban development was in the area surrounding each survey stop at each time period considered. We used Threshold Indicator Taxa Analysis to detect the response of forest and forest-edge species in terms of occurrence and relative abundance along the compactness gradient at two spatial scales (400-m and 1-km radius buffer). Our results showed that most forest birds and some forest-edge species were positively associated with high levels of compactness at the larger spatial scale; the proportion of forest in the surrounding landscape also had a significant effect when forest loss and forest fragmentation were accounted for. In contrast, the spatial configuration of exurban development was an important predictor of occurrence and abundance for only a few species at the smaller spatial scale. The positive response of forest birds to compactness at the larger scale could represent a systematic trajectory of decline and could be highly detrimental to bird diversity if exurban growth continues and creates more compacted development.


Therya ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 213-236
Author(s):  
Amanda K. Jones ◽  
Schuyler W. Liphardt ◽  
Jonathan L. Dunnum

A study of the mammals of the Gila region of New Mexico was conducted from 2012 through 2020, with 2,919 voucher specimens collected through fieldwork and collaborations with commercial trappers, in addition to data from camera traps, review of major holdings at 46 museums (n = 12,505 georeferenced specimens), and literature review.  Specimens cover a 170-year span, dating back to 1850 and were unevenly distributed spatially and temporally across the Gila region.  Most areas were very poorly represented and when summed across all mammal species, ranged from 0.02 to 3.7 specimens per km2.  The survey documented 108 species (104 now extant) for the region.  High species richness, greater than that reported for 38 states in the United States, is likely due to the juxtaposition of multiple biomes in the Gila, including the Sonoran, Chihuahuan, and Great Basin deserts, the Rocky Mountains and Sierra Madre Occidental, and nearby “sky islands’’ of the Southwest.  Two species, Leptonycteris yerbabuenae and Zapus luteus, are documented for the first time from the study area.  Expansions of the known range of these species, and Sciurus arizonensis are described from specimen and camera data.  Preliminary phylogeographic studies of four species (Notiosorex crawfordi, Neotoma albigula, Perognathus flavus, and Thomomys bottae) using the mitochondrial cytochrome-b gene reveal the dynamic biogeographic history of the region and reinforce how landscape complexity and climate change have jointly contributed to diversification and thus high mammalian diversity in the region.


2021 ◽  
Author(s):  
Ning-Jiun Jan ◽  
Noah Oakland ◽  
Pankaj Kumar ◽  
Girija Ramakrishnan ◽  
Brian W. Behm ◽  
...  

Background: Clostridioides difficile infection (CDI) is the most common hospital-acquired infection in the United States. Antibiotic-induced dysbiosis is the primary cause of susceptibility and fecal microbiota transplantation (FMT) has emerged as an effective therapy for recurrence. We previously demonstrated in the mouse model of CDI that antibiotic-induced dysbiosis reduced colonic expression of IL-25, and that FMT protected in part by restoring gut commensal bacteria-mediated IL-25 signaling. Here we conducted a prospective clinical trial to test the impact of FMT on immunity, specifically testing in humans if FMT induced IL-25 expression in the colon. Methods: Subjects received colonic biopsies and blood sampling at the time of FMT and 60-days later. Colon biopsies were assayed for IL-25 by immunoassay, for mRNA by RNAseq, and for bacterial content by 16 S rDNA sequencing. High dimensional flow cytometry was also conducted on peripheral blood mononuclear cells pre- and post-FMT. Results: All 10 subjects who received FMT had no CDI recurrences over a 2 year follow-up post FMT. FMT increased alpha diversity of the colonic microbiota and was associated with several immunologic changes. The cytokine IL-25 was increased in colonic tissue. In addition, increased expression of homeostatic genes and repression of inflammatory genes was observed in colonic mRNA transcripts. Finally, circulating Th17 cells were decreased post-FMT. Conclusion: The increase in the cytokine IL-25 accompanied by decreased inflammation is consistent with FMT acting in part to protect from recurrent CDI via restoration of commensal activation of type 2 immunity.


PLoS ONE ◽  
2016 ◽  
Vol 11 (6) ◽  
pp. e0157442 ◽  
Author(s):  
Cássio Alencar Nunes ◽  
Rodrigo Fagundes Braga ◽  
José Eugênio Cortes Figueira ◽  
Frederico de Siqueira Neves ◽  
G. Wilson Fernandes

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