scholarly journals Microfluidic Studies of Biofilm Formation in Dynamic Environments

2016 ◽  
Vol 198 (19) ◽  
pp. 2589-2595 ◽  
Author(s):  
Yutaka Yawata ◽  
Jen Nguyen ◽  
Roman Stocker ◽  
Roberto Rusconi

The advent of microscale technologies, such as microfluidics, has revolutionized many areas of biology yet has only recently begun to impact the field of bacterial biofilms. By enabling accurate control and manipulation of physical and chemical conditions, these new microscale approaches afford the ability to combine important features of natural and artificial microbial habitats, such as fluid flow and ephemeral nutrient sources, with an unprecedented level of flexibility and quantification. Here, we review selected case studies to exemplify this potential, discuss limitations, and suggest that this approach opens new vistas into biofilm research over traditional setups, allowing us to expand our understanding of the formation and consequences of biofilms in a broad range of environments and applications.

2020 ◽  
pp. 823-845
Author(s):  
Stuart F. Simmons ◽  
Benjamin M. Tutolo ◽  
Shaun L.L. Barker ◽  
Richard J. Goldfarb ◽  
François Robert

Abstract Epithermal, Carlin, and orogenic Au deposits form in diverse geologic settings and over a wide range of depths, where Au precipitates from hydrothermal fluids in response to various physical and chemical processes. The compositions of Au-bearing sulfidic hydrothermal solutions across all three deposit types, however, are broadly similar. In most cases, they comprise low-salinity waters, which are reduced, have a near-neutral pH, and CO2 concentrations that range from <4 to >10 wt %. Experimental studies show that the main factor controlling the concentration of Au in hydrothermal solutions is the concentration of reduced S, and in the absence of Fe-bearing minerals, Au solubility is insensitive to temperature. In a solution containing ~300 ppm H2S, the maximum concentration of Au is ~1 ppm, representing a reasonable upper limit for many ore-forming solutions. Where Fe-bearing minerals are being converted to pyrite, Au solubility decreases as temperature cools due to the decreasing concentration of reduced S. High Au concentrations (~500 ppb) can also be achieved in strongly oxidizing and strongly acidic chloride solutions, reflecting chemical conditions that only develop during intense hydrolytic leaching in magmatic-hydrothermal high-sulfidation epithermal environments. Gold is also soluble at low to moderate levels (10–100 ppb) over a relatively wide range of pH values and redox states. The chemical mechanisms which induce Au deposition are divided into two broad groups. One involves achieving states of Au supersaturation through perturbations in solution equilibria caused by physical and chemical processes, involving phase separation (boiling), fluid mixing, and pyrite deposition via sulfidation of Fe-bearing minerals. The second involves the sorption of ionic Au on to the surfaces of growing sulfide crystals, mainly arsenian pyrite. Both groups of mechanisms have capability to produce ore, with distinct mineralogical and geochemical characteristics. Gold transport and deposition processes in the Taupo Volcanic Zone, New Zealand, show how ore-grade concentrations of Au can accumulate by two different mechanisms of precipitation, phase separation and sorption, in three separate hydrothermal environments. Phase separation caused by flashing, induced by depressurization and associated with energetic fluid flow in geothermal wells, produces sulfide precipitates containing up to 6 wt.% Au from a hydrothermal solution containing a few ppb Au. Sorption on to As-Sb-S colloids produces precipitates containing tens to hundreds of ppm Au in the Champagne Pool hot spring. Sorption on to As-rich pyrite also leads to anomalous endowments of Au of up to 1 ppm in hydrothermally altered volcanic rocks occurring in the subsurface. In all of these environments, Au-undersaturated solutions produce anomalous concentrations of Au that match and surpass typical ore-grade concentrations, indicating that near-saturated concentrations of dissolved metal are not a prerequisite for generating economic deposits of Au. The causes of Au deposition in epithermal deposits are related to sharp temperature-pressure gradients that induce phase separation (boiling) and mixing. In Carlin deposits, Au deposition is controlled by surface chemistry and sorption processes on to rims of As-rich pyrite. In orogenic deposits, at least two Au-depositing mechanisms appear to produce ore; one involves phase separation and the other involves sulfidation reactions during water-rock interaction that produces pyrite; a third mechanism involving codeposition of Au-As in sulfides might also be important. Differences in the regimes of hydrothermal fluid flow combined with mechanisms of Au precipitation play an important role in shaping the dimensions and geometries of ore zones. There is also a strong link between Au-depositing mechanisms and metallurgical characteristics of ores.


2003 ◽  
Vol 83 (3) ◽  
pp. 409-427 ◽  
Author(s):  
K. L. Anderson

The world of gastrointestinal (GI) bacteria is one of the most complex and intricate of the microbial domain. These bacteria are confronted with a constantly changing (and often hostile) environment, including fluctuations in both physical and chemical conditions. Neighboring microorganisms not only contend for substrate but even launch complex chemical attacks with the apparent purpose of disrupting the activity of their competitors. Yet, some species not only survive, they even flourish, in the GI tract because they possess the ability to adapt to these environmental fluctuations and assaults from other microbes. Such adaptation involves sophisticated programs in the bacterial cell that enable it to monitor its environment and make necessary adjustments of physiological activity and gene expression. Among these adjustments is the ability of cell-to-cell communication, biofilm formation, regulation of cytoplasmic pH, and maintenance of genetic diversity through mutation and horizontal gene transfer. As a consequence, bacteria in the GI tract often manifest very different physiological features than are observed for the same bacteria during routine laboratory cultivation. Key words: Gastrointestinal bacteria, bacteria, gastrointestinal tract, ruminal bacteria, biofilms, quorum-sensing, colonic bacteria


1993 ◽  
Vol 265 (2) ◽  
pp. H543-H552 ◽  
Author(s):  
Y. Yuan ◽  
W. M. Chilian ◽  
H. J. Granger ◽  
D. C. Zawieja

This study reports measurements of albumin permeability in isolated coronary venules. The isolated microvessel technique allows the quantification of transmural exchange of macromolecules under tightly controlled physical and chemical conditions. Transvenular exchange of albumin was studied in isolated coronary venules during alterations in filtration rate caused by changes in intravascular pressure. The apparent permeability coefficient of albumin (Pa) at an intraluminal pressure of 11 cmH2O was 3.92 +/- 0.43 x 10(-6) cm/s. Elevating intraluminal pressure to 16 and 21 cmH2O increased Pa to 5.13 +/- 0.57 x 10(-6) and 6.78 +/- 0.66 x 10(-6) cm/s, respectively. Calculation of the true diffusive permeability coefficient of albumin (Pd) at zero filtration rate was 1.54 x 10(-6) cm/s. The product of hydraulic conductance (Lp) and (1 - sigma), where sigma is the solute reflection coefficient, was 3.25 x 10(-7) cm.s-1 x cmH2O-1. At a net filtration pressure of 4-5 cmH2O, diffusion accounts for > 60% of total albumin transport across the venular wall. Transmural albumin flux is very sensitive to filtration rate, rising 6.7% for each cmH2O elevation of net filtration pressure. At 11 cmH2O net filtration pressure, convection accounts for nearly 70% of net albumin extravasation from the venular lumen. We suggest that the isolated coronary venule is a suitable preparation for the study of solute exchange in the heart.


Life ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 539
Author(s):  
Benton C. Clark ◽  
Vera M. Kolb ◽  
Andrew Steele ◽  
Christopher H. House ◽  
Nina L. Lanza ◽  
...  

Although the habitability of early Mars is now well established, its suitability for conditions favorable to an independent origin of life (OoL) has been less certain. With continued exploration, evidence has mounted for a widespread diversity of physical and chemical conditions on Mars that mimic those variously hypothesized as settings in which life first arose on Earth. Mars has also provided water, energy sources, CHNOPS elements, critical catalytic transition metal elements, as well as B, Mg, Ca, Na and K, all of which are elements associated with life as we know it. With its highly favorable sulfur abundance and land/ocean ratio, early wet Mars remains a prime candidate for its own OoL, in many respects superior to Earth. The relatively well-preserved ancient surface of planet Mars helps inform the range of possible analogous conditions during the now-obliterated history of early Earth. Continued exploration of Mars also contributes to the understanding of the opportunities for settings enabling an OoL on exoplanets. Favoring geochemical sediment samples for eventual return to Earth will enhance assessments of the likelihood of a Martian OoL.


2013 ◽  
Vol 41 (1) ◽  
pp. 393-398 ◽  
Author(s):  
Sabrina Fröls

Biofilms or multicellular structures become accepted as the dominant microbial lifestyle in Nature, but in the past they were only studied extensively in bacteria. Investigations on archaeal monospecies cultures have shown that many archaeal species are able to adhere on biotic and abiotic surfaces and form complex biofilm structures. Biofilm-forming archaea were identified in a broad range of extreme and moderate environments. Natural biofilms observed are mostly mixed communities composed of archaeal and bacterial species of various abundances. The physiological functions of the archaea identified in such mixed communities suggest a significant impact on the biochemical cycles maintaining the flow and recycling of the nutrients on earth. Therefore it is of high interest to investigate the characteristics and mechanisms underlying the archaeal biofilm formation. In the present review, I summarize and discuss the present investigations of biofilm-forming archaeal species, i.e. their diverse biofilm architectures in monospecies or mixed communities, the identified EPSs (extracellular polymeric substances), archaeal structures mediating surface adhesion or cell–cell connections, and the response to physical and chemical stressors implying that archaeal biofilm formation is an adaptive reaction to changing environmental conditions. A first insight into the molecular differentiation of cells within archaeal biofilms is given.


Author(s):  
Fitri Andriyani

Binuangeun Mangrove Ecosystem is located in the south western Java Island, in the area of ​​Lebak Regency, Banten Province. Mangrove ecosystems are ecosystems that located at the Coastal areas which are a habitat for a variety of marine animals which are associated with it, mostly fish, because of its complex or a very effective root structure which can provide a place for fish to be able to live, take shelter, develop, breed and also look for food. This research was conducted to determine the physical and chemical condition and the variety of fishes which found in the Binuangeu, Banten Mangrove Ecosystem. This research method uses literature study. Physical and chemical conditions of the Binuangeun Mangrove Ecosystem, Banten have degrees of temperature ranging from 28.20 - 32.20; acidity range between 7.00 - 8.09; turbidity ranges from 22.50 - 76.00 NTU; water current ranged from 0.079 to 0.189; phosphate content ranges from 0.02 - 0.008; salinity ranges from 30-35 PSU; and dissolved oxygen content ranges from 5.67 - 8.70. The types of fish found in the Binuangeun Mangrove Ecosystem, Banten are 45 species from 22 Family. The most abundant and relatively high species of existence is the Gobiidae with 10 species.   Keywords: Banten, Binuangeun, Ecosystems, Fish, Mangroves


2003 ◽  
Vol 185 (18) ◽  
pp. 5632-5638 ◽  
Author(s):  
Konstantin Agladze ◽  
Debra Jackson ◽  
Tony Romeo

ABSTRACT The complex architecture of bacterial biofilms inevitably raises the question of their design. Microstructure of developing Escherichia coli biofilms was analyzed under static and laminar flow conditions. Cell attachment during early biofilm formation exhibited periodic density patterns that persisted during development. Several models for the origination of biofilm microstructure are considered, including an activator-inhibitor or Turing model.


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