scholarly journals The Geometry of Information Coding in Correlated Neural Populations

2021 ◽  
Vol 44 (1) ◽  
Author(s):  
Rava Azeredo da Silveira ◽  
Fred Rieke

Neurons in the brain represent information in their collective activity. The fidelity of this neural population code depends on whether and how variability in the response of one neuron is shared with other neurons. Two decades of studies have investigated the influence of these noise correlations on the properties of neural coding. We provide an overview of the theoretical developments on the topic. Using simple, qualitative, and general arguments, we discuss, categorize, and relate the various published results. We emphasize the relevance of the fine structure of noise correlation, and we present a new approach to the issue. Throughout this review, we emphasize a geometrical picture of how noise correlations impact the neural code. Expected final online publication date for the Annual Review of Neuroscience, Volume 44 is July 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

2022 ◽  
Vol 40 (1) ◽  
Author(s):  
Lewis W. Yu ◽  
Gulistan Agirman ◽  
Elaine Y. Hsiao

The gut microbiome influences many host physiologies, spanning gastrointestinal function, metabolism, immune homeostasis, neuroactivity, and behavior. Many microbial effects on the host are orchestrated by bidirectional interactions between the microbiome and immune system. Imbalances in this dialogue can lead to immune dysfunction and immune-mediated conditions in distal organs including the brain. Dysbiosis of the gut microbiome and dysregulated neuroimmune responses are common comorbidities of neurodevelopmental, neuropsychiatric, and neurological disorders, highlighting the importance of the gut microbiome–neuroimmune axis as a regulator of central nervous system homeostasis. In this review, we discuss recent evidence supporting a role for the gut microbiome in regulating the neuroimmune landscape in health and disease. Expected final online publication date for the Annual Review of Immunology, Volume 40 is April 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Karthik Shekhar ◽  
Joshua R. Sanes

It has been known for over a century that the basic organization of the retina is conserved across vertebrates. It has been equally clear that retinal cells can be classified into numerous types, but only recently have methods been devised to explore this diversity in unbiased, scalable, and comprehensive ways. Advances in high-throughput single-cell RNA-sequencing (scRNA-seq) have played a pivotal role in this effort. In this article, we outline the experimental and computational components of scRNA-seq and review studies that have used them to generate retinal atlases of cell types in several vertebrate species. These atlases have enabled studies of retinal development, responses of retinal cells to injury, expression patterns of genes implicated in retinal disease, and the evolution of cell types. Recently, the inquiry has expanded to include the entire eye and visual centers in the brain. These studies have enhanced our understanding of retinal function and dysfunction and provided tools and insights for exploring neural diversity throughout the brain. Expected final online publication date for the Annual Review of Vision Science, Volume 7 is September 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


2017 ◽  
Author(s):  
Matthew G. Perich ◽  
Juan A. Gallego ◽  
Lee E. Miller

AbstractLong-term learning of language, mathematics, and motor skills likely requires plastic changes in the cortex, but behavior often requires faster changes, sometimes based even on single errors. Here, we show evidence of one mechanism by which the brain can rapidly develop new motor output, seemingly without altering the functional connectivity between or within cortical areas. We recorded simultaneously from hundreds of neurons in the premotor (PMd) and primary motor (M1) cortices, and computed models relating these neural populations throughout adaptation to reaching movement perturbations. We found a signature of learning in the “null subspace” of PMd with respect to M1. Earlier experiments have shown that null subspace activity allows the motor cortex to alter preparatory activity without directly influencing M1. In our experiments, the null subspace planning activity evolved with the adaptation, yet the “potent” mapping that captures information sent to M1 was preserved. Our results illustrate a population-level mechanism within the motor cortices to adjust the output from one brain area to its downstream structures that could be exploited throughout the brain for rapid, online behavioral adaptation.


2021 ◽  
Vol 84 (1) ◽  
Author(s):  
Holly A. Ingraham ◽  
Candice B. Herber ◽  
William C. Krause

The role of central estrogen in cognitive, metabolic, and reproductive health has long fascinated the lay public and scientists alike. In the last two decades, insight into estrogen signaling in the brain and its impact on female physiology is beginning to catch up with the vast information already established for its actions on peripheral tissues. Using newer methods to manipulate estrogen signaling in hormone-sensitive brain regions, neuroscientists are now identifying the molecular pathways and neuronal subtypes required to establish crucial sex differences in energy allocation. However, the immense cellular complexity of these hormone-sensitive brain regions makes it clear that more research is needed to fully appreciate how estrogen modulates neural circuits to regulate physiological and behavioral end points. Such insight is essential for understanding how natural or drug-induced hormone fluctuations across lifespan affect women's health. Expected final online publication date for the Annual Review of Physiology, Volume 84 is February 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Timothy J. Buschman

Working memory is central to cognition, flexibly holding the variety of thoughts needed for complex behavior. Yet, despite its importance, working memory has a severely limited capacity, holding only three to four items at once. In this article, I review experimental and computational evidence that the flexibility and limited capacity of working memory reflect the same underlying neural mechanism. I argue that working memory relies on interactions between high-dimensional, integrative representations in the prefrontal cortex and structured representations in the sensory cortex. Together, these interactions allow working memory to flexibly maintain arbitrary representations. However, the distributed nature of working memory comes at the cost of causing interference between items in memory, resulting in a limited capacity. Finally, I discuss several mechanisms used by the brain to reduce interference and maximize the effective capacity of working memory. Expected final online publication date for the Annual Review of Vision Science, Volume 7 is September 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


2021 ◽  
Vol 73 (1) ◽  
Author(s):  
Jean-Paul Noel ◽  
Dora E. Angelaki

Navigating by path integration requires continuously estimating one's self-motion. This estimate may be derived from visual velocity and/or vestibular acceleration signals. Importantly, these senses in isolation are ill-equipped to provide accurate estimates, and thus visuo-vestibular integration is an imperative. After a summary of the visual and vestibular pathways involved, the crux of this review focuses on the human and theoretical approaches that have outlined a normative account of cue combination in behavior and neurons, as well as on the systems neuroscience efforts that are searching for its neural implementation. We then highlight a contemporary frontier in our state of knowledge: understanding how velocity cues with time-varying reliabilities are integrated into an evolving position estimate over prolonged time periods. Further, we discuss how the brain builds internal models inferring when cues ought to be integrated versus segregated—a process of causal inference. Lastly, we suggest that the study of spatial navigation has not yet addressed its initial condition: self-location. Expected final online publication date for the Annual Review of Psychology, Volume 73 is January 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


Author(s):  
Benjamin Schuman ◽  
Shlomo Dellal ◽  
Alvar Prönneke ◽  
Robert Machold ◽  
Bernardo Rudy

Many of our daily activities, such as riding a bike to work or reading a book in a noisy cafe, and highly skilled activities, such as a professional playing a tennis match or a violin concerto, depend upon the ability of the brain to quickly make moment-to-moment adjustments to our behavior in response to the results of our actions. Particularly, they depend upon the ability of the neocortex to integrate the information provided by the sensory organs (bottom-up information) with internally generated signals such as expectations or attentional signals (top-down information). This integration occurs in pyramidal cells (PCs) and their long apical dendrite, which branches extensively into a dendritic tuft in layer 1 (L1). The outermost layer of the neocortex, L1 is highly conserved across cortical areas and species. Importantly, L1 is the predominant input layer for top-down information, relayed by a rich, dense mesh of long-range projections that provide signals to the tuft branches of the PCs. Here, we discuss recent progress in our understanding of the composition of L1 and review evidence that L1 processing contributes to functions such as sensory perception, cross-modal integration, controlling states of consciousness, attention, and learning. Expected final online publication date for the Annual Review of Neuroscience, Volume 44 is July 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


Author(s):  
Jingqi Chen ◽  
Guiying Dong ◽  
Liting Song ◽  
Xingzhong Zhao ◽  
Jixin Cao ◽  
...  

The accumulation of vast amounts of multimodal data for the human brain, in both normal and disease conditions, has provided unprecedented opportunities for understanding why and how brain disorders arise. Compared with traditional analyses of single datasets, the integration of multimodal datasets covering different types of data (i.e., genomics, transcriptomics, imaging, etc.) has shed light on the mechanisms underlying brain disorders in greater detail across both the microscopic and macroscopic levels. In this review, we first briefly introduce the popular large datasets for the brain. Then, we discuss in detail how integration of multimodal human brain datasets can reveal the genetic predispositions and the abnormal molecular pathways of brain disorders. Finally, we present an outlook on how future data integration efforts may advance the diagnosis and treatment of brain disorders. Expected final online publication date for the Annual Review of Biomedical Data Science, Volume 4 is July 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


2016 ◽  
Vol 28 (2) ◽  
pp. 305-326 ◽  
Author(s):  
Xue-Xin Wei ◽  
Alan A. Stocker

Fisher information is generally believed to represent a lower bound on mutual information (Brunel & Nadal, 1998 ), a result that is frequently used in the assessment of neural coding efficiency. However, we demonstrate that the relation between these two quantities is more nuanced than previously thought. For example, we find that in the small noise regime, Fisher information actually provides an upper bound on mutual information. Generally our results show that it is more appropriate to consider Fisher information as an approximation rather than a bound on mutual information. We analytically derive the correspondence between the two quantities and the conditions under which the approximation is good. Our results have implications for neural coding theories and the link between neural population coding and psychophysically measurable behavior. Specifically, they allow us to formulate the efficient coding problem of maximizing mutual information between a stimulus variable and the response of a neural population in terms of Fisher information. We derive a signature of efficient coding expressed as the correspondence between the population Fisher information and the distribution of the stimulus variable. The signature is more general than previously proposed solutions that rely on specific assumptions about the neural tuning characteristics. We demonstrate that it can explain measured tuning characteristics of cortical neural populations that do not agree with previous models of efficient coding.


2017 ◽  
Author(s):  
Joel Zylberberg

AbstractTo study sensory representations, neuroscientists record neural activities while presenting different stimuli to the animal. From these data, we identify neurons whose activities depend systematically on each aspect of the stimulus. These neurons are said to be “tuned” to that stimulus feature. It is typically assumed that these tuned neurons represent the stimulus feature in their firing, whereas any “untuned” neurons do not contribute to its representation. Recent experimental work questioned this assumption, showing that in some circumstances, neurons that are untuned to a particular stimulus feature can contribute to its representation. These findings suggest that, by ignoring untuned neurons, our understanding of population coding might be incomplete. At the same time, several key questions remain unanswered: Are the impacts of untuned neurons on population coding due to weak tuning that is nevertheless below the threshold the experimenters set for calling neurons tuned (vs untuned)? Do these effects hold for different population sizes and/or correlation structures? And could neural circuit function ever benefit from having some untuned neurons vs having all neurons be tuned to the stimulus? Using theoretical calculations and analyses of in vivo neural data, I answer those questions by: a) showing how, in the presence of correlated variability, untuned neurons can enhance sensory information coding, for a variety of population sizes and correlation structures; b) demonstrating that this effect does not rely on weak tuning; and c) identifying conditions under which the neural code can be made more informative by replacing some of the tuned neurons with untuned ones. These conditions specify when there is a functional benefit to having untuned neurons.Author SummaryIn the visual system, most neurons’ firing rates are tuned to various aspects of the stimulus (motion, contrast, etc.). For each stimulus feature, however some neurons appear to be untuned: their firing rates do not depend on that stimulus feature. Previous work on information coding in neural populations ignored untuned neurons, assuming that only the neurons tuned to a given stimulus feature contribute to its encoding. Recent experimental work questioned this assumption, showing that neurons with no apparent tuning can sometimes contribute to information coding. However, key questions remain unanswered. First, how do the untuned neurons contribute to information coding, and could this effect rely on those neurons having weak tuning that was overlooked? Second, does the function of a neural circuit ever benefit from having some neurons untuned? Or should every neuron be tuned (even weakly) to every stimulus feature? Here, I use mathematical calculations and analyses of data from the mouse visual cortex to answer those questions. First, I show how (and why) correlations between neurons enable the untuned neurons to contribute to information coding. Second, I show that neural populations can often do a better job of encoding a given stimulus feature when some of the neurons are untuned for that stimulus feature. Thus, it may be best for the brain to segregate its tuning, leaving some neurons untuned for each stimulus feature. Along with helping to explain how the brain processes external stimuli, this work has strong implications for attempts to decode brain signals, to control brain-machine interfaces: better performance could be obtained if the activities of all neurons are decoded, as opposed to only those with strong tuning.


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