Molecular variability of Schistonchus caprifici (Nematoda: Aphelenchoididae) from Ficus carica in Turkey

Nematology ◽  
2008 ◽  
Vol 10 (5) ◽  
pp. 639-649 ◽  
Author(s):  
Baris Gulcu ◽  
Selçuk Hazir ◽  
Robin M. Giblin-Davis ◽  
Weimin Ye ◽  
Natsumi Kanzaki ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Intraspecific Variation ◽  
Human Activities ◽  
Large Subunit ◽  
Ficus Carica ◽  
Lsu Rdna ◽  
Molecular Analyses ◽  
Molecular Variability ◽  
Geographic Patterns ◽  
Fig Trees

Abstract An extensive biogeographical survey was conducted from 2004 through part of 2007 of nematodes associated with the edible fig, Ficus carica, in seven different regions of Turkey. Figs (syconia) were collected, dissected and harvested for nematodes from 308 apparently wild or naturalised F. carica trees along roadsides and trails. Nematode specimens were examined morphologically and molecular analyses of sequences of the D2/D3 expansion segments of the large subunit (LSU) rDNA and partial mitochondrial DNA COI (mtCOI) were done. Of the 308 fig trees, 150 (49%) were positive for what was morphologically confirmed to be Schistonchus caprifici. Figs on one tree in Kahramanmaras city, South East Turkey, were found to contain S. caprifici and dauer juveniles of what appears to be a diplogastrid nematode. Molecular analyses produced congruent trees for both sequenced loci supporting the hypothesis that S. caprifici from different locations in Turkey are part of a well supported clade with some inherent variability. No geographic patterns were observed for either locus suggesting that the sequences generated represent inherent intraspecific variation for S. caprifici and that human activities related to the culture of the edible fig have allowed for mixing of any previously allopatric lineages.

Bradynema listronoti n. sp. (Nematoda: Allantonematidae), a parasite of the carrot weevil Listronotus oregonensis (Coleoptera: Curculionidae) in Quebec, Canada

Nematology ◽  
2007 ◽  
Vol 9 (5) ◽  
pp. 608-622 ◽  
Author(s):  
Kelley Thomas ◽  
Guy Boivin ◽  
Guy Bélair ◽  
Robin Giblin-Davis ◽  
Yongsan Zeng ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Molecular Analysis ◽  
New Genus ◽  
Large Subunit ◽  
Ventral Side ◽  
The Other ◽  
Lsu Rdna ◽  
Listronotus Oregonensis ◽  
Carrot Weevil ◽  
Shared Characteristic

AbstractBradynema listronoti n. sp. was collected from the haemocoel of adults and the environment of the carrot weevil, Listronotus oregonensis in Quebec, Canada. It is the first species of Bradynema to be reported from weevils and is described and illustrated herein. Bradynema listronoti n. sp. appears to be closest to B. trixagi because of the shared characteristic of a peloderan bursa in males which is not present in the other seven described species in the genus. Bradynema listronoti n. sp. can be differentiated from all members of the genus by the possession of a degenerate, but sometimes visible, stylet remnant, non-degenerate pharynx in males and by the often dorsally-curved C-shaped body (ventral side is convex) of parasitic females. The vestigial stylet in all stages argues for placement of B. listronoti n. sp. within the genus Bradynema, but some characteristics, such as a non-degenerate pharynx in males, suggest placement in a new genus or affinities with other genera in the Allantonematidae, e.g., Allantonema. Molecular analysis of the near full length SSU, D2/D3 expansion segments of the large subunit (LSU) rDNA and partial mitochondrial DNA COI (mtCOI) suggest that this nematode is unique and D2/D3 analysis supports monophyly with B. rigidum, the only other member of the genus to be sequenced.

Acanthocotyle gurgesiella n. sp. (Monogenea: Acanthocotylidae) from the deep-sea skate Gurgesiella furvescens (Rajidae) in the south-eastern Pacific

2017 ◽  
Vol 92 (2) ◽  
pp. 223-227 ◽  
Author(s):  
L.A. Ñacari ◽  
F.A. Sepulveda ◽  
R. Escribano ◽  
M.E. Oliva
Keyword(s):  
New Species ◽  
Deep Sea ◽  
Dna Analysis ◽  
Mitochondrial Gene ◽  
Large Subunit ◽  
Morphological Characteristics ◽  
Molecular Data ◽  
Full Description ◽  
Lsu Rdna ◽  
Molecular Analyses

AbstractLittle is known about the diversity of parasites of the deep-sea fish of the world's oceans. Here, a new species of monogenean parasite of the deep-sea skate Gurgesiella furvescens is described. Specimens of parasites were obtained from the skin of two specimens of the dusky finless skate, G. furvescens (Rajidae), in the vicinity of Valparaiso (33°S, 72°W), central Chile, from midwater trawl fishing at depths of 350–450 m. Both morphological and molecular analyses were conducted to provide a full description of the new species, named Acanthocotyle gurgesiella. For the molecular analyses, nuclear large subunit (LSU) rDNA and the mitochondrial gene cytochrome c oxidase 1 (COI) were used. From the morphological analysis and a comparison with the known species of the genus, A. gurgesiella can be identified by a combination of morphological characteristics, including the number of testes, number of radial rows of sclerites in the pseudohaptor, aperture of the genital pore and shape of the vitelline follicles. The results from the DNA analysis indicated that A. gurgesiella has a genetic divergence of 3.2–3.7% (LSU rDNA gene) from A. urolophi, the only congener species for which molecular data are available.

scholarly journals Cryptococcus rajasthanensis sp. nov., an anamorphic yeast species related to Cryptococcus laurentii, isolated from Rajasthan, India

2007 ◽  
Vol 57 (2) ◽  
pp. 414-418 ◽  
Author(s):  
Puja Saluja ◽  
G. S. Prasad
Keyword(s):  
Large Subunit ◽  
Its Region ◽  
Molecular Data ◽  
Lsu Rdna ◽  
Cryptococcus Laurentii ◽  
The Novel ◽  
D2 Domain ◽  
Its Regions ◽  
Anamorphic Yeast ◽  
Physiological Tests

Two novel anamorphic yeast strains (S-15LT and 3-C1) were isolated from the inflorescences of plants collected in two different towns in Rajasthan State, India. Sequencing of the D1/D2 domains of the large-subunit (LSU) rDNA and the internal transcribed spacer (ITS) regions suggested they are strains of the same species. Phenotypic characteristics such as the absence of fermentation, the absence of sexual structures and ballistoconidia, the assimilation of myo-inositol and d-glucuronate, and positive Diazonium blue B and urease reactions indicated that these strains belong to the genus Cryptococcus. The novel strains differed from Cryptococcus laurentii in six physiological tests and differed from other related species in more than six tests. A phylogenetic analysis of the sequences of the D1/D2 domains of the LSU rDNA and the ITS regions placed these strains in the Bulleromyces clade within the order Tremellales, with C. laurentii as their closest described relative. The novel strains showed 1.6 and 7.5 % divergence in the D1/D2 domain of the LSU rDNA and ITS regions, respectively, with respect to C. laurentii. The divergence from other species was more than 3 % for the D1/D2 domain and more than 9 % for the ITS region. On the basis of the phenotypic and molecular data, strains S-15LT and 3-C1 represent a novel species within the genus Cryptococcus, for which the name Cryptococcus rajasthanensis sp. nov. is proposed. The type strain is S-15LT (=MTCC 7075T=CBS 10406T).

Morphometrics and molecular analysis ofOzolaimus linstowin. sp. (Oxyuroidea: Pharyngodonidae) from the green lizardIguana iguana

2015 ◽  
Vol 90 (2) ◽  
pp. 186-198 ◽  
Author(s):  
S.V. Malysheva
Keyword(s):  
Body Size ◽  
Large Subunit ◽  
Buccal Capsule ◽  
Small Subunit ◽  
Present Species ◽  
Lsu Rdna ◽  
Adult Males ◽  
Spicule Length ◽  
Males And Females ◽  
Characteristic Features

AbstractOzolaimus linstowin. sp. is described from the large intestine ofIguana iguanaLinnaeus, 1758 from Mexico. The present species can be easily distinguished fromO. megatyphlonandO. cirratusby the presence of a long and slender pharynx not divided into sections, more similar to the remaining two species,O. monhysteraandO. ctenosauri. Ozolaimus linstowin. sp. can be differentiated fromO. monhysteraby the shorter spicule length and smaller body size of both males and females. Males ofO. linstowin. sp. are morphologically close to those ofO. ctenosauri, but females possess a markedly smaller body size and differ in the organization of the oral cuticular armature. Adult males ofO. linstowin. sp. bear some characteristic features of the J3 juvenile morphology in terms of the cuticular organization of the oral and buccal capsule. Phylogenetic analysis ofO.linstowin. sp. using partial small subunit (SSU) and D2–D3 large subunit (LSU) rDNA shows relationships with several Oxyuridae genera.

scholarly journals Metataxonomic comparison between internal transcribed spacer and 26S ribosomal large subunit (LSU) rDNA gene

2019 ◽  
Vol 290 ◽  
pp. 132-140 ◽  
Author(s):  
Jatziri Mota-Gutierrez ◽  
Ilario Ferrocino ◽  
Kalliopi Rantsiou ◽  
Luca Cocolin
Keyword(s):  
Internal Transcribed Spacer ◽  
Large Subunit ◽  
Lsu Rdna ◽  
Rdna Gene

scholarly journals Molecular variability in Amerindians: widespread but uneven information

2002 ◽  
Vol 74 (2) ◽  
pp. 223-263 ◽  
Author(s):  
FRANCISCO M. SALZANO
Keyword(s):  
Mitochondrial Dna ◽  
Ancient Dna ◽  
Genetic Heterogeneity ◽  
Applied Research ◽  
South American ◽  
Chromosome Variation ◽  
North Central ◽  
Molecular Variability ◽  
Present Trend ◽  
Made In

A review was made in relation to the molecular variability present in North, Central, and South American Indian populations. It involved results from ancient DNA, mitochondrial DNA in extant populations, HLA and other autosomal markers, X and Y chromosome variation, as well as data from parasitic viruses which could show coevolutionary changes. The questions considered were their origin, ways in which the early colonization of the continent took place, types and levels of the variability which developed, peculiarities of the Amerindian evolutionary processes, and eventual genetic heterogeneity which evolved in different geographical areas. Although much information is already available, it is highly heterogeneous in relation to populations and types of genetic systems investigated. Unfortunately, the present trend of favoring essentially applied research suggest that the situation will not basically improve in the future.

Morphometrical and molecular evidence suggests cryptic diversity among hookworms (Nematoda: Uncinaria) that parasitize pinnipeds from the south-eastern Pacific coasts

2018 ◽  
Vol 94 ◽  
Author(s):  
M.T. González ◽  
Z. López ◽  
J.J. Nuñez ◽  
K.I. Calderón-Mayo ◽  
C. Ramírez ◽  
...  
Keyword(s):  
Large Subunit ◽  
Principal Component ◽  
Eastern Pacific ◽  
Lsu Rdna ◽  
Molecular Evidence ◽  
South American ◽  
Southern Chile ◽  
The South ◽  
South Eastern ◽  
Neophoca Cinerea

AbstractHookworms of the genus Uncinaria parasitize pinniped pups in various locations worldwide. Four species have been described, two of which parasitize pinniped pups in the southern hemisphere: Uncinaria hamiltoni parasitizes Otaria flavescens and Arctocephalus australis from the South American coast, and Uncinaria sanguinis parasitizes Neophoca cinerea from the Australian coast. However, their geographical ranges and host specificity are unknown. Uncinaria spp. are morphologically similar, but molecular analyses have allowed the recognition of new species in the genus Uncinaria. We used nuclear genetic markers (internal transcribed spacer (ITS) and large subunit (LSU) rDNA) and a mitochondrial genetic marker (cytochrome c oxidase subunit I (COI)) to evaluate the phylogenetic relationships of Uncinaria spp. parasitizing A. australis and O. flavescens from South American coasts (Atlantic and Pacific coasts). We compared our sequences with published Uncinaria sequences. A Generalized Mixed Yule Coalescent (GMYC) analysis was also used to delimit species, and principal component analysis was used to compare morphometry among Uncinaria specimens. Parasites were sampled from A. australis from Peru (12°S), southern Chile (42°S), and the Uruguayan coast, and from O. flavescens from northern Chile (24°S) and the Uruguayan coast. Morphometric differences were observed between Uncinaria specimens from both South American coasts and between Uncinaria specimens from A. australis in Peru and southern Chile. Phylogenetic and GMYC analyses suggest that south-eastern Pacific otariid species harbour U. hamiltoni and an undescribed putative species of Uncinaria. However, more samples from A. australis and O. flavescens are necessary to understand the phylogenetic patterns of Uncinaria spp. across the South Pacific.

scholarly journals Colletotrichum isolates related to Anthracnose of cashew trees in Brazil: morphological and molecular description using LSU rDNA sequences

2010 ◽  
Vol 53 (4) ◽  
pp. 741-752 ◽  
Author(s):  
Ana Maria Queijeiro Lopez ◽  
John Alexander Lucas
Keyword(s):  
Mycelial Growth ◽  
Host Plants ◽  
Large Subunit ◽  
Lsu Rdna ◽  
Rdna Sequences ◽  
D2 Domain ◽  
The One ◽  
High Degree ◽  
Molecular Description ◽  
28S Ribosomal Dna

Thirty six isolates of fungi obtained from anthracnose lesions of cashew and associated host plants in Brazil, were compared by their cultural, morphological and partial sequences of the 28S ribosomal DNA characters. They showed a high degree of cultural variability. The average mycelial growth rate on all tested media ranged from 10.2-13.3 mm/day between the isolates. Most of them produced perithecia (sterile and fertile) and some produced setae (sterile and fertile). All the isolates produced acervuli with predominantly cylindrical conidia (12.4-17.7 µmX 4.8-6.0 µm in width) with round ends, which became septate on germination, and produced unlobed or slightlylobed appressoria. Comparison of the D2 domain of the large subunit (LSU) rDNA sequences with those of other defined species of Colletotrichum and Glomerella grouped 35 of the isolates with known strains of C. gloeosporioides from different hosts (> 98.9% homology). The one exception (LARS 921) was identical to G. cingulata (LARS 238) from Vigna unguiculata.

Cyrea Szymborska Gen. Et Sp. Nov., a New Textulariid Foraminifer from the Mediterranean Sea

2018 ◽  
Vol 48 (2) ◽  
pp. 156-163
Author(s):  
Maria Holzmann ◽  
Sylvain Rigaud ◽  
Shahrouz Amini ◽  
Ivan Voltski ◽  
Jan Pawlowski
Keyword(s):  
Mediterranean Sea ◽  
New Genus ◽  
Wall Structure ◽  
Lsu Rdna ◽  
Molecular Analyses ◽  
Rdna Sequences ◽  
Paraphyletic Group ◽  
The Mediterranean ◽  
Genus One ◽  
A New Species

Abstract Textulariid foraminifera are characterized by a multichambered test with an agglutinated wall structure. Recent molecular work has shown that the order Textulariida appears as a paraphyletic group within the class Globothalamea. While larger members of the textulariids are fairly well known, smaller forms like the ones described here are often overlooked or synonymized with known species. A new species and genus was isolated from algal samples collected on the French coast of the Mediterranean Sea. Cyrea szymborska gen. and sp. nov., has a trochospiral chamber arrangement, measuring 100–210 µm in diameter. The organic wall is brownish, opaque, and sparsely agglutinated with diatom frustules and mineral grains, mostly 20 µm or smaller in size. The proloculus is not agglutinated. The extra-umbilical aperture forms a low arch. It is smooth, not agglutinated, and located on the last chamber. The biochemistry of the organic wall was investigated using Raman spectroscopy, showing that it is made of a meshwork of proteoglycans. A combined analysis of SSU and LSU rDNA sequences confirms the position of Cyrea among textulariids, distantly from all other genera. Molecular analyses revealed two phylotypes belonging to the new genus, one of which is formally described here.

Male identification, generic classification and sexual dimorphism of Micronychus pardus (Kazantsev, 2018) comb. nov. (Coleoptera: Lycidae: Calochrominae)

Zootaxa ◽  
2019 ◽  
Vol 4657 (1) ◽  
pp. 177-182 ◽  
Author(s):  
MICHAL MOTYKA
Keyword(s):  
Mitochondrial Dna ◽  
Sexual Dimorphism ◽  
Species Identification ◽  
Dna Sequences ◽  
Morphological Characters ◽  
Molecular Data ◽  
Large Specimen ◽  
Molecular Analyses ◽  
Almost All ◽  
First Time

Almost all net-winged beetles are members of Müllerian complexes and their similarity due to phenotypic coevolution sometimes complicates species identification and generic placement. Therefore, large specimen series, detailed exhaustive examination of morphological characters and molecular data are needed to clarify the taxonomic placement. Using mitochondrial DNA sequences, I investigated the sexual dimorphism and generic placement of the recently described species Calochromus pardus Kazantsev, 2018. I found that the species does not belong in Calochromus Guérin-Méneville, 1833 and all morphological characters and molecular analyses point to its placement in Micronychus Motschulsky, 1861. Therefore, Micronychus pardus (Kazantsev, 2018), comb. nov. is proposed. Additionally, the male is described here for the first time showing the sexual dimorphism in the species. Unlike the females, the males do not superficially resemble members of Xylobanus Waterhouse, 1879 with bright coloured elytral costae and black background, but mimics the sympatrically occurring yellow and black lycids in the genus Cautires Waterhouse, 1879. 

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