Out of place and out of time – towards a more integrated approach to heterochrony

2006 ◽  
Vol 56 (4) ◽  
pp. 487-502 ◽  
Author(s):  
Simon Rundle ◽  
John Spicer

AbstractHeterochrony (changes in the relative timing of development between species) has been studied almost exclusively using morphological characters, with a focus on changes in size and shape (as a surrogate for time) between ancestral species and their descendents. Such an approach is restrictive in that it precludes the investigation of heterochronies in other, non-morphological traits and, therefore, hampers a more integrated approach to heterochrony. Such an integrated approach, where cellular, molecular and genetic approaches are used within a comparative phylogenetic framework to investigate developmental sequences, has been advocated by workers such as Smith and Raff. Here we suggest that equal emphasis should be given to the importance of physiological and ecological mechanisms that relate to changes in developmental sequence. Reviews of the history and status of physiological and ecological heterochrony reveal several examples for each, although progress has been hampered to some degree by a lack of recognition of physiological heterochrony and a lack of mechanistic understanding (heterochronies in evolutionary ecology). What emerges is that each discipline potentially brings something quite different, and complementary, to the study of heterochrony. The emergence of physiological heterochrony has arguably put the emphasis back on the object of selection and how the developing organism works: studies relating ecology and heterochrony have sought to establish whether or not there is an adaptive basis to altered sequences. We propose that any future studies of heterochrony should seek to exploit these different strengths rather than see them as merely complementary approaches.

2014 ◽  
Vol 66 (1) ◽  
pp. 3-15
Author(s):  
Sylwia Ciaglo-Androsiuk

AbstractRelation between morphological traits of the root system and yield related traits is an important issue concerning efforts aiming at improving of ideotype of cultivated plants species, including pea. In this paper, to analyse the dependency between traits describing the root system morphology and yield potential, Person’s andSpearman's_correlations as well as canonical correlations were used.Root system was analyzed in 14 and 21 day-old seedlings growing in blotting-paper cylinders. Yield potential of pea was analysed in a field experiment. Results of Person’s and Spearman's_correlations revealed that number of lateral roots and lateral roots density were correlated witch yield related traits. Correlation between root length and shoot length was observed only for 14 day-old seedlings. The result of canonical correlations revealed that number of lateral roots and lateral roots density had the largest effect on yield related traits. This work highlights, that in order to improve the yield of pea it might become necessary to understand genetic determination of morphological traits of the root system, especially number of lateral roots.


Phytotaxa ◽  
2017 ◽  
Vol 318 (1) ◽  
pp. 1 ◽  
Author(s):  
ELTON M. C. LEME ◽  
SASCHA HELLER ◽  
GEORG ZIZKA ◽  
HEIDEMARIE HALBRITTER

The authors provide a new circumscription for genera of the “Cryptanthoid complex” of Bromeliaceae subfam. Bromelioideae, originally composed of Cryptanthus, Lapanthus, Orthophytum, and Sincoraea, on the basis of new or re-evaluated ecological, geographical and morphological evidence, as well as molecular phylogenies. A new generic status is proposed for Cryptanthus subg. Hoplocryptanthus and two new genera, Forzzaea, and Rokautskyia, as well as four new subgenera in Orthophytum (Capixabanthus, Clavanthus, Krenakanthus, and Orthocryptanthus) are described to render taxonomic units monophyletic. The recognized taxa are well circumscribed by the combination of geographical range, ecology and morphological characters (sex distribution, leaf succulence, sepal and petal size and connation, petal appendages, pollen and stigma morphology, fruit size, calyx persistency, seed size and number per fruit). Field collected living specimens of 78 of the 81 species of Cryptanthus s.l., all species of Lapanthus, 58 of the 59 species of Orthophytum, and all species of Sincoraea were analysed in habitat and/or in cultivation, allowing the documentation and illustration of new and underutilized characters. The molecular analysis incorporated 91 accessions representing 33 species of Cryptanthus, all species (3) of Lapanthus, 42 species of Orthophytum, and 9 species of Sincoraea, including the type species for the first three genera and four outgroup taxa. The results suggest, that some morphological characters generally considered homoplasious for Bromelioideae, for the “Cryptanthoid complex”, are not homoplasious at least within the obtained, biogeographycally well delimited clades and their taxonomical utility is redeemed.


2017 ◽  
Vol 91 (5) ◽  
pp. 919-932 ◽  
Author(s):  
Daniela S. Monti ◽  
Viviana A. Confalonieri

AbstractThe use of different methodological approaches together with an exhaustive qualitative study has helped to recognize important morphological traits to distinguish species in a systematic and phylogenetic framework.Parabolinella triarthroidesHarrington, 1938 was described based on two cranidia from the Quebrada de Coquena, Purmamarca, Jujuy province. The generic assignment ofP. triarthroideshas been questioned by a phylogenetic analysis, which resolves this species as the sister group ofBienvilliaClark, 1924. To explore the generic assignment of this species, a revision of the type material, plus a morphometric analysis including specimens ofParabolinellaBrøgger, 1882 andBienvilliawere performed. In addition, the original matrix used in the published phylogeny was reviewed and enlarged, including more species ofBienvillia. Continuous characters were coded in different ways in order to compare how they could affect the ordering of specimens and their phylogenetic relationships. Finally, both methodologies were compared, especially in regard to the behavior of the quantitative characters included in the analyses. From the combined analyses, it is shown that similarities between the cranidium ofP. triarthroidesand all otherParabolinellaspecies are true homologies instead of a by-product of evolutionary convergence. Therefore,P. triarthroidesshould be considered a member of this genus. Finally, this study demonstrates that the best strategy for solving systematic problems in groups where the morphological variation is the only source of information (i.e., fossil taxa without living representatives) is the implementation of an integrative approach, combining different methodological techniques and a good description of specimens.


2020 ◽  
Author(s):  
Ludovic Le Renard ◽  
André L. Firmino ◽  
Olinto L. Pereira ◽  
Ruth A. Stockey ◽  
Mary. L. Berbee

AbstractPREMISE OF THE STUDYFossils show that fly-speck fungi have been reproducing with small, black thyriothecia on leaf surfaces for ∼250 million years. We analyze morphological characters of extant thyriothecial fungi to develop a phylogenetic framework for interpreting fossil taxa.METHODSWe placed 59 extant fly-speck fungi in a phylogeny of 320 Ascomycota using nuclear ribosomal large and small subunit sequences, including newly determined sequences from nine taxa. We reconstructed ancestral character states using BayesTraits and maximum likelihood after coding 11 morphological characters based on original observations and literature. We analyzed the relationships of three previously published Mesozoic fossils using parsimony and our morphological character matrix, constrained by the molecular phylogeny.KEY RESULTSThyriothecia evolved convergently in multiple lineages of superficial, leaf- inhabiting ascomycetes. The radiate and ostiolate scutellum organization is restricted to Dothideomycetes. Scutellum initiation by intercalary septation of a single hypha characterizes Asterinales and Asterotexiales, and initiation by coordinated growth of two or more adjacent hyphae characterizes Aulographaceae (order incertae sedis). Scutella in Microthyriales are initiated apically on a lateral hyphal branch. Patterns of hyphal branching in scutella contribute to distinguishing among orders. Parsimony resolves three fossil taxa as Dothideomycetes; one is further resolved as a member of a Microthyriales-Zeloasperisporiales clade within Dothideomycetes.CONCLUSIONSThis is the most comprehensive systematic study of thyriothecial fungi and their relatives to date. Parsimony analysis of the matrix of character states of modern taxa provides an objective basis for interpreting fossils, leading to insights into morphological evolution and geological ages of Dothideomycetes clades.


2021 ◽  
Vol 38 ◽  
pp. 00024
Author(s):  
Gulnora Denisova ◽  
Safarbek Rahimov

Individuals of Dracocephalum nutans L. have been studied at different altitude levels from 460 to 2437 m above the level seas. The influence of the height gradient on morphological characters has been shown: the number of generative and vegetative shoots, the height of the generative shoot, the length and width of the leaf blade, length of its petiole, and inflorescence length. It was found that the height gradient has the greatest influence on the height of the generative shoot and the length of the inflorescence. When individuals grow higher along the altitude gradient, the height of the generative shoot and the length of the inflorescence decrease. The fluctuation of the average values of the traits of D. nutans in a wide range was established. The intrapopulation analysis of D. nutans individuals does not depend on the height factor.


2021 ◽  
Author(s):  
Phougeishangbam Rolish Singh ◽  
Bart van de Vossenberg ◽  
Katarzynar Rybarczyk-Mydłowska3 ◽  
Magdalena Kowalewska-Groszkowska ◽  
Wim Bert ◽  
...  

Rotylenchus is a widely-distributed economically important plant-parasitic nematode group whose species-level identification relies largely on limited morphological characters including character-based tabular keys and molecular data of ribosomal and mitochondrial genes. In this study, a combined morphological and molecular analysis of three populations of R. goodeyi from Belgium, Poland and the Netherlands revealed important character variations of this species leading to synonymisation of R. rhomboides with R. goodeyi, and a high nucleotide variation within cox1 gene sequences in these populations. Additional Illumina sequencing of DNA from individuals of the Dutch population revealed two variants of mitogenomes each of approximately 23 Kb in size, differing by about 9% and containing eleven protein coding genes, two ribosomal RNA genes and up to 29 transfer RNA genes. In addition to the first representative whole genome shotgun sequence datasets of the genus Rotylenchus, this study also provides the full length mitogenome and the ribosomal DNA sequences of R. goodeyi.


Zootaxa ◽  
2011 ◽  
Vol 2984 (1) ◽  
pp. 67 ◽  
Author(s):  
LEANDRO C. S. ASSIS ◽  
MARCELO R. DE CARVALHO ◽  
QUENTIN D. WHEELER

David Wake and colleagues provided a thought-provoking review of the concept of homoplasy through the integration, within a phylogenetic framework, of genetic and developmental data (Wake et al. 2011). According to them (p. 1032) “Molecular sequence data have greatly increased our ability to identify homoplastic traits.” This is made clear, for example, in their flow chart for homoplasy detection (Figure 2, p. 1034), wherein homoplasy is discovered through the mapping of “traits of interest” onto a phylogram, a practice common in the molecular phylogenetic paradigm. The “mapping” is usually of morphological characters that are employed to support the chosen (molecular) topology, but which, as a consequence, do not themselves contribute to the formation of those topologies (Assis & Carvalho 2010).


Phytotaxa ◽  
2019 ◽  
Vol 406 (1) ◽  
pp. 64 ◽  
Author(s):  
ANGEL ROMO ◽  
MAŁGORZATA MAZUR ◽  
MONTSERRAT SALVÀ-CATARINEU ◽  
ADAM BORATYŃSKI

Analyses based on cone, seed and needle characteristics revealed that J. canariensis Guyot in Mathou & Guyot is distinct from both the Circum-Mediterranean J. turbinata and West-Mediterranean J. phoenicea. The genetic differences between these three taxa, which make up the aggregate of J. phoenicea, are found also at a high level. These data support the recognition of the Canarian juniper at the specific level. A key is proposed, in which taxa of the J. phoenicea aggregate can be distinguished on the basis of morphological traits.                The nomenclatural name: Juniperus phoenicea subsp. canariensis, widely employed in the literature, is validly published. Besides we adduce that Juniperus canariensis Knight ex Godron, is not a validly published name, and therefore can not be considered an earlier homonym of J. canariensis Guyot in Mathou & Guyot.


2018 ◽  
Vol 2 (6) ◽  
Author(s):  
Demian F Gomez ◽  
James Skelton ◽  
M Sedonia Steininger ◽  
Richard Stouthamer ◽  
Paul Rugman-Jones ◽  
...  

Abstract The ambrosia beetle Euwallacea fornicatus Eichhoff sensu lato is a complex of genetically divergent emerging pests responsible for damages to tree industries and ecosystems around the world. All lineages within the species complex are currently considered morphologically identical, presenting problems for their delineation and highlighting the shortcomings of species concepts based solely on type-specimen morphology. The objectives of this work were to 1) broaden the geographic sampling of the E. fornicatus complex in Asia, 2) reconstruct relationships between clades and populations, 3) find morphological characters or combinations of characters which are useful in delimiting the genetic lineages of the E. fornicatus species complex, and 4) propose taxonomic delimitation of species where morphology and phylogenetic identity correlate. Our integrated approach using molecular and morphological evidence suggests four clades that differ morphologically, but with overlap, therefore, cytochrome oxidase c subunit I (COI) barcoding remains necessary for assigning specimens to a clade. The following taxonomic changes are proposed: E. fornicatus (Eichhoff 1868) (= ‘Tea Shot Hole Borer Clade a’); E. fornicatior (Eggers 1923), stat. rev. (= ‘Tea Shot Hole Borer Clade b’); E. whitfordiodendrus (Schedl 1942), stat. rev. (= ‘Polyphagous Shot Hole Borer’); and E. kuroshio Gomez and Hulcr, sp. nov. (= ‘Kuroshio Shot Hole Borer’). This approach delivers a practical, evidence-based guidance for species delineation that can address overlapping variation in morphological characters of an emerging pest species complex.


Nematology ◽  
2016 ◽  
Vol 18 (3) ◽  
pp. 311-336 ◽  
Author(s):  
Natsumi Kanzaki ◽  
Robin M. Giblin-Davis ◽  
Barbara J. Center

The type specimens of fiveBursaphelenchusspecies described by Massey,i.e.,B. bestiolus,B. corneolus,B. elytrus,B. newmexicanusandB. wilfordi, were re-examined and photo-documented to update their descriptions in light of a contemporary understanding of the genus. The presence of a lateral field, basal swelling of stylet, P1 ventral single papilla of males and a pair of three-celled structures in females, which were not described or mentioned in the original descriptions, were observed, although the number of lateral incisures were not clarified because of sample condition. Within these five species, the intrageneric groupings ofB. bestiolusandB. wilfordihad been unclear. In the present study, because of newly observed morphological characters,B. bestiolusis considered to belong to thehofmanni-group, and is close toB. talonusandB. rufipennis. These three species form a species complex and are distinguished from each other only by female tail morphology. The species status ofB. wilfordiis still unclear, although, based on spicule morphology and structure and arrangement of genital papillae, we consider it to belong to thehofmanni-group, close toB. parvispicularis,B. paraparvispicularisandB. osumiana. However, female characters ofB. wilfordiare also similar to members of thecocophilus-group andParasitaphelenchus. Re-isolation and molecular identification are necessary to confirm the status of these species. By contrast, the affiliations ofB. corneoluswith thehofmanni-group andB. elytrusandB. newmexicanuswith theeggersi-group were confirmed. Based upon its morphological traits,B. corneolusis close toB. gerberaeandB. paracorneolus, and is distinguished from these species by its spicule morphology, female tail morphology and female post-uterine sac length. However, male specimens ofB. corneoluswere not available for the present study and confirmation is necessary.Bursaphelenchus elytrusis similar toB. tusciaeand is distinguished from it by its spicule (condylus) morphology and excretory pore position.Bursaphelenchus newmexicanusis close toB. glochisand is distinguished from it mostly by morphometrics and spicule (condylus) morphology. However, morphometrics usually vary among individuals and populations of a species, necessitating morphometric and molecular comparisons of more isolates (strains) in order to clarify specific status.


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