Kallikrein-related peptidases and associated microRNAs as promising prognostic biomarkers in gastrointestinal malignancies

2018 ◽  
Vol 399 (8) ◽  
pp. 821-836 ◽  
Author(s):  
Panagiotis G. Adamopoulos ◽  
Panagiotis Tsiakanikas ◽  
Andreas Scorilas

AbstractGastrointestinal (GI) malignancies represent a wide spectrum of diseases of the GI tract and its accessory digestive organs, including esophageal (EC), gastric (GC), hepatocellular, pancreatic (PC) and colorectal cancers (CRC). Malignancies of the GI system are responsible for nearly 30% of cancer-related morbidity and approximately 40% of cancer-related mortality, worldwide. For this reason, the discovery of novel prognostic biomarkers that can efficiently provide a better prognosis, risk assessment and prediction of treatment response is an imperative need. Human kallikrein-related peptidases (KLKs) are a subgroup of trypsin and chymotrypsin-like serine peptidases that have emerged as promising prognosticators for many human types of cancer, being aberrantly expressed in cancerous tissues. The aberrant expression ofKLKsin human malignancies is often regulated byKLK/microRNAs (miRNAs) interactions, as many miRNAs have been found to targetKLKsand therefore alter their expression levels. The biomarker utility ofKLKshas been elucidated not only in endocrine-related human malignancies, including those of the prostate and breast, but also in GI malignancies. The main purpose of this review is to summarize the existing information regarding the prognostic significance of KLKs in major types of GI malignancies and highlight the regulatory role of miRNAs on the expression levels ofKLKsin these types of cancer.

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e7728 ◽  
Author(s):  
Junmin Wang ◽  
Yanyun Yan ◽  
Zhiqi Zhang ◽  
Yali Li

Breast cancer is the leading cause of cancer-related death in women worldwide. Aberrant expression levels of miR-10b-5p in breast cancer has been reported while the molecular mechanism of miR-10b-5p in tumorigenesis remains elusive. Therefore, this study was aimed to investigate the role of miR-10b-5p in breast cancer and the network of its target genes using bioinformatics analysis. In this study, the expression profiles and prognostic value of miR-10b-5p in breast cancer were analyzed from public databases. Association between miR-10b-5p and clinicopathological parameters were analyzed by non-parametric test. Moreover, the optimal target genes of miR-10b-5p were obtained and their expression patterns were examined using starBase and HPA database. Additionally, the role of these target genes in cancer development were explored via Cancer Hallmarks Analytics Tool (CHAT). The protein–protein interaction (PPI) networks were constructed to further investigate the interactive relationships among these genes. Furthermore, GO, KEGG pathway and Reactome pathway analyses were carried out to decipher functions of these target genes. Results demonstrated that miR-10b-5p was down-regulated in breast cancer and low expression of miR-10b-5p was significantly correlated to worse outcome. Five genes, BIRC5, E2F2, KIF2C, FOXM1, and MCM5, were considered as potential key target genes of miR-10b-5p. As expected, higher expression levels of these genes were observed in breast cancer tissues than in normal tissues. Moreover, analysis from CHAT revealed that these genes were mainly involved in sustaining proliferative signaling in cancer development. In addition, PPI networks analysis revealed strong interactions between target genes. GO, KEGG, and Reactome pathway analysis suggested that these target genes of miR-10b-5p in breast cancer were significantly involved in cell cycle. Predicted target genes were further validated by qRT-PCR analysis in human breast cancer cell line MDA-MB-231 transfected with miR-10b mimic or antisense inhibitors. Taken together, our data suggest that miR-10b-5p functions to impede breast carcinoma progression via regulation of its key target genes and hopefully serves as a potential diagnostic and prognostic marker for breast cancer.


2020 ◽  
Vol 36 (5) ◽  
pp. 388-396
Author(s):  
Yat Hang To ◽  
Belinda Lee ◽  
Hui-Li Wong ◽  
Peter Gibbs ◽  
Jeanne Tie

<b><i>Background:</i></b> Gastrointestinal cancers are among the most common cancers worldwide and account for a high proportion of cancer-related mortality. Advancements to improve outcomes are constrained by the lack of biomarkers that can offer early diagnostic and prognostic information as traditional serological tumour markers and conventional imaging approaches are not able to provide early information regarding disease recurrence and treatment outcomes. Recent advances in technology have allowed the detection of circulating tumour DNA (ctDNA) in plasma, nucleic acid fragments released into the circulation from primary or metastatic lesions undergoing apoptosis and necrosis. A growing body of evidence has emerged supporting the use of ctDNA in many aspects of cancer care. <b><i>Summary:</i></b> This review focuses on the potential role of ctDNA in the management of patients with gastrointestinal cancers including colorectal, pancreatic, and upper gastrointestinal cancers. In this review, we discuss its possible utility in screening, detection of minimal residual disease and prognostication, longitudinal surveillance, and identification of therapeutic targets and resistance incorporating recent literature and ongoing randomised clinical trials. <b><i>Key Messages:</i></b> ctDNA has substantial potential as a clinically useful marker in the management of gastrointestinal cancers from cancer screening through to treatment of advanced disease.


Blood ◽  
2010 ◽  
Vol 116 (21) ◽  
pp. 2727-2727
Author(s):  
Rachel E. Culpin ◽  
Kim Pearce ◽  
James R. Bailey ◽  
Nicola J. Sunter ◽  
Joanna C. Pointon ◽  
...  

Abstract Abstract 2727 Introduction: Chronic lymphocytic leukemia (CLL) is a B-cell lymphoproliferative disease which follows a heterogeneous clinical course. Although the two staging systems, based on clinical parameters, have been effective in stratifying patients into different risk groups, they both fail to identify the early stage patients who will progress rapidly and therefore benefit from an early or more intensive therapy. This is important as most patients present at an early stage of disease. A number of biological markers have been identified to date to aid prediction. These include the IgVH mutational status, CD38 and Zap-70 expression. Although these parameters provide fairly accurate prognostic information, neither marker alone or combined can identify either Binet stage A patients who are going to progress, or the stage B or C patients who may require alternative treatment at the onset. It is therefore important to identify new predictive markers which may provide additional or better prognostic information. The microRNAs are endogenous, non-coding RNAs that play key regulatory roles in a diverse range of pathways, including development, cell proliferation, differentiation and apoptosis. These 18–24 nucleotide single-stranded RNAs are involved in post-transcriptional gene regulation, by binding to complimentary sites in the 3' UTR of messenger RNAs (mRNA), usually resulting in gene silencing. A number of findings early on in the history of microRNAs suggested their potential role in human cancer, and in 2006 Calin et al directly associated de-regulated expression of miR-15 and -16 in the development of CLL. Since this time, a number of microRNAs have been implicated in CLL lymphomagenesis, including miR-92, which is a mature member of the miR-17-92 cluster. The miR-17-92 is located on chromosome 13q31 and shown to act in an oncogenic capacity (oncomiR-1). With respect to CLL, although the expression levels of mature microRNAs of the miR-17-92 cluster have been assessed, the role of such expression in predicting disease outcome has never been examined. Methods and Results: We used qRT-PCR to assess the expression levels of mature microRNAs of the miR-17-92 cluster, relative to normal CD19+ B-cells. We report that, despite being transcribed from the same parental cluster, the expression levels of all mature microRNAs vary, with miR-17-5p and -18 showing significantly higher levels than the other members of the cluster (p = <0.001 – 0.001 and p = <0.001 – 0.0256, respectively). This variation is not the result of known microRNA polymorphisms. In all Binet stage patients, high expression of miR-18 (p = 0.021), but low miR-17-5p (p = 0.039) significantly predicted for shorter treatment free survival (TFS), while overexpression of miR-19a (p = 0.084) and -19b (p = 0.088) but a low level of miR-92 (p = 0.188) showed a trend for prediction. Within the Binet stage A group, miRs -19a (p = 0.036), -19b (p = 0.09), -17-5p (p = 0.01) and -92 (p = 0.076) retained prognostic significance. Combined expression of either high, or low risk miRs significantly improved the prediction based on each factor alone in both all Binet stage patients (p = 0.004 and p = 0.025, respectively) and also in the Binet stage A group (p = 0.012 and p = 0.013, respectively). The combined expression of predictive microRNAs with traditional prognostic makers (IgVH, CD38 and Zap-70) improved prediction based on either factor alone. Expression of the high risk factor miR-18 identified the patients with low CD38 who were more likely to progress (p<0.001) and similarly, the low risk factor miR-17-5p predicted those patients with low Zap-70 or mutated IgVH who were more likely to require earlier treatment (p = 0.021 and p = 0.01, respectively). Multivariate analysis showed that expression of miR-18 (H.R 9.871) and Zap-70 (H.R 4.443) or miR-19a (H.R 6.999) and Zap-70 (H.R 22.523) retained independent prognostic significance within all Binet stage and stage A patients, respectively. Conclusions: In summary, high levels of miRs -18, -19a and -19b but low expression of miRs -17-5p and -92 predict for shorter TFS in CLL. This is the first study to implicate members of the miR-17-92 cluster as risk factors in CLL. Given the recent identification of the involvement of miR-17-92 oncomiR-1 in the activation of anti-apoptotic and proliferative pathways, the role of this cluster in CLL warrants further investigation. Disclosures: No relevant conflicts of interest to declare.


2020 ◽  
pp. jim-2020-001654
Author(s):  
Dushyant Singh Dahiya ◽  
Asim Kichloo ◽  
Jagmeet Singh ◽  
Michael Albosta ◽  
Manidhar Lekkala

Immunotherapy is an extremely important breakthrough and an exciting new modality of treatment for a wide spectrum of cancers. It is focused around developing agents to stimulate or suppress the immune system, in a specific manner, to fight off a wide spectrum of diseases, particularly cancers. Traditional therapies available for the treatment of cancers include surgical intervention, chemotherapy, radiation therapy or a combination of these, which tend to be very non-specific. However, immunotherapy shows a stark difference from conventional therapy, in fact, that it has a high level of specificity for the tumor-specific antigens. The recent success of cancer immunotherapies in clinical trials is slowly revolutionizing the landscape for cancer therapy. The US Food and Drug Administration has approved numerous agents, after clinical trials showed promising results, for the treatment of multiple cancers. The role of immunotherapy in gastrointestinal cancers has also been very promising, particularly in patients with advanced metastatic disease or malignancies refractory to initial treatment. In this review of literature, we detail and discuss the immunotherapy agents approved for the treatment of GI cancers and glance at the future of immunotherapy for patients with these cancers.


Blood ◽  
2014 ◽  
Vol 124 (21) ◽  
pp. 483-483
Author(s):  
Dominik Beck ◽  
Cintia Palu ◽  
Anushi Shah ◽  
Tobias Herold ◽  
Jake Olivier ◽  
...  

Abstract Background: Long noncoding RNAs (lncRNAs) are regulators of cell identify and their aberrant expression has been associated with the development of cancer. Several studies have shown that lncRNAs are required for normal hematopoiesis and also function as oncogenic drivers in acute leukemia. However, the association of lncRNA expression with AML subtypes and impact on prognosis is not known. Methods: LincRNAs are transcribed from the intergenic part of the genome and their transcripts are typically capped, polyadenylated and often spliced. Given their mRNA like features their expression levels can be detected using standard expression profiling assays. Tiling arrays have been used to profile gene expression levels of large patient cohorts and are currently the largest existing resource to study leukemia genomics. We have repurposed intragenic probes of the Affymetrics HG-133 Plus 2 (HG-133P2) to estimate the expression levels of 1664 known lincRNA genes (Figure 1a). Results: To estimate lincRNA levels in AML, we first analyzed a dataset of 159 samples from the Cancer Genome Atlas (TCGA) that were profiled using the HG-133P2 chip and RNA-seq. In all but one case, the expression levels obtained from both technologies were significantly correlated (r>0.6 Pearson correlation; p<0.001; Figure 1b,c) suggesting that lincRNA levels can be accurately estimated from microarray data. Expression analysis of lincRNAs was then carried out in three datasets totaling 737 patient samples for which HG-133P2 data was available. Samples included those from the Netherlands (NL, n=419), USA (TCGA, n= 179) and Germany (GER, n=139). To evaluate whether lincRNA expression was associated with AML subgroups, hierarchical clustering was performed on the NL and TCGA sets (Figure 2a). Patients with t(8:21) and t(15;17)/FAB M3 sub-groups and those with mutations in CEBPA, NPM1 and/or FLT3-ITD associated with distinct lincRNA profiles in both cohorts. In addition, we found associations that were unique to one or the other dataset i.e. FAB M2 and M5 in the NL and inv (16) in the TCGA sets. TP53 mutations were only available in the TCGA set and patients with these mutations showed a distinct lincRNA expression profile. Taken together, these data suggest that specific lincRNA expression profiles, similar to gene expression profiles, are associated with known AML subgroups. The 1664 lincRNAs were further analyzed using non-negative matrix factorization clustering in the NL and TCGA sets. The NL cohort optimally separated into four groups (Figure 2b) that were associated (p<0.01; Fisher exact test) with either good or poor prognostic subtypes. For example, cluster one was associated with patients of poor cytogenetics and those having re-arrangements of chromosome 11q32, while cluster three was associated with patients in FAB M3/ t(15:17), FABM4 and NPM1 mutations. Similarly, the TCGA cohort was optimally separated into five groups (Figure 2c), including cluster three which was associated (p<0.01) with patients of complex karyotype, those in FAB M0 and carrying mutations in RUNX1 and TP53 while cluster five was associated with patients with chromosomal translocation in t(8,21) and t(15;17)/FAB M3 and mutations in CEBPA. These data suggest that lincRNA profiles segregate with subgroups of overlapping characteristics that are enriched for either good or poor prognostics. The NL, TCGA and GER cohorts were also analyzed for overall survival using the cox-regression model. In total we found that 78 (NL), 92 (TCGA) and 60 (GER) lincRNAs were significantly associated with overall survival (p < 0.05). An integrative approach including a meta-analysis of the cox-regression p-values (Souffers method; p <0.01) revealed a survival signature of 17 lincRNAS (linc-sig) across the three sets. The prognostic power was maintained in the NL (p<0.001), TCGA (p<0.001) and GER cohorts (p=0.1) using Kaplan–Meier statistics (Figure 3). Importantly, the linc-sig remained an independent prognostic factor when accounted for age, sex, WBC and CEBPA. Conclusions We investigated the role of 1664 lincRNAs across three AML patient cohorts. The data presented shows for the first time that distinct lincRNA expression profiles are associated with recognized cytogenetic and mutational subgroups that demonstrate good or poor characteristics and that a signature of 17 lincRNAs predicts overall survival in AML. Figure 1 Figure 1. Figure 2 Figure 2. Figure 3 Figure 3. Disclosures No relevant conflicts of interest to declare.


2008 ◽  
Vol 24 (6) ◽  
pp. 453
Author(s):  
Sang Hee Kang ◽  
Sung Soo Kim ◽  
Byung Wook Min ◽  
Joo Han Lee ◽  
Jun Won Um

Author(s):  
Ali Forouzanfar ◽  
Hamideh Sadat Mohammadipour ◽  
Fatemeh Forouzanfar

: Periodontal diseases are highly prevalent and can affect high percentage of the world population. Oxidative stress and inflammation plays an important role in the pathogenesis of periodontal diseases. Nowadays, more attention has been focused on the herbal remedies in the field of drug discovery. Green tea is an important source of polyphenol antioxidants, it has long been used as a beverage worldwide. The most interesting polyphenol components of green tea leaves that are related with health benefits are the catechins. Taken together this review suggested that green tea with its wide spectrum of activities could be a healthy alternative for controlling the damaging reactions seen in periodontal diseases.


2019 ◽  
Vol 20 (12) ◽  
pp. 1217-1226 ◽  
Author(s):  
Arunaksharan Narayanankutty

Background: Phosphoinositide 3-kinase (PI3Ks) is a member of intracellular lipid kinases and involved in the regulation of cellular proliferation, differentiation and survival. Overexpression of the PI3K/Akt/mTOR signalling has been reported in various forms of cancers, especially in colorectal cancers (CRC). Due to their significant roles in the initiation and progression events of colorectal cancer, they are recognized as a striking therapeutic target. Objective: The present review is aimed to provide a detailed outline on the role of PI3K/Akt/mTOR pathway in the initiation and progression events of colorectal cancers as well as its function in drug resistance. Further, the role of PI3K/Akt/mTOR inhibitors alone and in combination with other chemotherapeutic drugs, in alleviating colorectal cancer is also discussed. The review contains preclinical and clinical evidence as well as patent literature of the pathway inhibitors which are natural and synthetic in origin. Methods: The data were obtained from PubMed/Medline databases, Scopus and Google patent literature. Results: PI3K/Akt/mTOR signalling is an important event in colorectal carcinogenesis. In addition, it plays significant roles in acquiring drug resistance as well as metastatic initiation events of CRCs. Several small molecules of natural and synthetic origin have been found to be potent inhibitors of CRCs by effectively downregulating the pathway. Data from various clinical studies also support these pathway inhibitors and several among them are patented. Conclusion: Inhibitors of the PI3K/mTOR pathway have been successful for the treatment of primary and metastatic colorectal cancers, rendering the pathway as a promising clinical cancer therapeutic target.


2018 ◽  
Vol 20 (2) ◽  
pp. 232-240 ◽  
Author(s):  
Izabella Mogilnicka ◽  
Marcin Ufnal

Background:Accumulating evidence suggests that microbiota play an important role in host’s homeostasis. Thus far, researchers have mostly focused on the role of bacterial microbiota. However, human gut is a habitat for several fungal species, which produce numerous metabolites. Furthermore, various types of food and beverages are rich in a wide spectrum of fungi and their metabolites.Methods:We searched PUBMED and Google Scholar databases to identify clinical and pre-clinical studies on fungal metabolites, composition of human mycobiota and fungal dysbiosis.Results:Fungal metabolites may serve as signaling molecules and exert significant biological effects including trophic, anti-inflammatory or antibacterial actions. Finally, research suggests an association between shifts in gut fungi composition and human health. Changes in mycobiota composition have been found in obesity, hepatitis and inflammatory bowel diseases.Conclusion:The influence of mycobiota and dietary fungi on homeostasis in mammals suggests a pharmacotherapeutic potential of modulating the mycobiota which may include treatment with probiotics and fecal transplantation. Furthermore, antibacterial action of fungi-derived molecules may be considered as a substitution for currently used antibacterial agents and preservatives in food industry.


2021 ◽  
Vol 56 (2) ◽  
pp. 133-139
Author(s):  
Secil Ak Aksoy ◽  
Melis Mutlu ◽  
Rabia Nur Balcin ◽  
Mevlut Ozgur Taskapilioglu ◽  
Cagla Tekin ◽  
...  

Introduction: The noncoding RNAs (ncRNAs) play a role in biological processes of various cancers including gliomas. The majority of these transcripts are uniquely expressed in differentiated tissues or specific glioma types. Pediatric oligodendroglioma (POG) is a rare subtype of diffuse glioma and accounts for <1% of pediatric brain tumors. Because histologically POG resembles adult OG, the same treatment is applied as adults. However, the significance in predicting outcomes in POG patients is unclear. In this study, we aimed to investigate the prognostic significance of expression ­profiles of microRNA (miRNA) and long noncoding RNA ­(LncRNA) in POGs. Methods: We investigated the levels of 13 known miRNAs and 6 LncRNAs in tumor samples from 9 patients with primary POG by using RT-PCR and analyzed their association with outcomes. Results: The expression levels of miR-21, miR-106a, miR-10b, and LncRNA NEAT1 were higher, and the expression level of miR-143 was lower in POG tissues compared with normal brain tissues (p = 0.006, p = 0.032, p = 0.034, p = 0.002, and p = 0.001, respectively). High levels of NEAT1 and low expression of miR-143 were associated with decreased probability of short disease-free survival (p = 0.018 and p = 0.022, respectively). Discussion: NEAT1 and miR-143 levels could serve as reciprocal prognostic predictors of disease progression in patients with POG. New treatment models to regulate the expression levels of NEAT1 and miR-143 will bring a new approach to the therapy of POG.


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