scholarly journals Brain Network Modeling Based on Mutual Information and Graph Theory for Predicting the Connection Mechanism in the Development of Alzheimer's Disease

2019 ◽  
Author(s):  
Si Shuaizong ◽  
Wang Bin ◽  
Liu Xiao ◽  
Yu Chong ◽  
Ding Chao ◽  
...  
Keyword(s):  
Mutual Information ◽  
Brain Networks ◽  
Brain Network ◽  
Network Efficiency ◽  
Characteristic Path Length ◽  
Connection Probability ◽  
Network Topologies ◽  
Cortical Regions ◽  
Anatomical Space ◽  
The Brain

Abnormal connections in brain networks of healthy people always bring the problems of cognitive impairments and degeneration of specific brain circuits, which may finally result in Alzheimer’s disease (AD). Exploring the development of the brain from normal controls (NC) to AD is an essential part of human research. Although connections changes have been found in the development, the connection mechanism that drives these changes remain incompletely understood. The purpose of this study is to explore the connection changes in brain networks in the process from NC to AD, and uncover the underlying connection mechanism that shapes the topologies of AD brain networks. In particular, we propose a model named MINM from the perspective of topology-based mutual information to achieve our aim. MINM concerns the question of estimating the connection probability between two cortical regions with the consideration of both the mutual information of their observed network topologies and their Euclidean distance in anatomical space. In addition, MINM considers establishing and deleting connections, simultaneously, during the networks modeling from the stage of NC to AD. Experiment results show that MINM is sufficient to capture an impressive range of topological properties of real brain networks such as characteristic path length, network efficiency, and transitivity, and it also provides an excellent fit to the real brain networks in degree distribution compared to experiential models. Thus, we anticipate that MINM may explain the connection mechanism for the formation of the brain network organization in AD patients.

scholarly journals Brain Network Modeling Based on Mutual Information and Graph Theory for Predicting the Connection Mechanism in the Progression of Alzheimer’s Disease

Entropy ◽  
2019 ◽  
Vol 21 (3) ◽  
pp. 300 ◽  
Author(s):  
Shuaizong Si ◽  
Bin Wang ◽  
Xiao Liu ◽  
Chong Yu ◽  
Chao Ding ◽  
...  
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Graph Theory ◽  
Mutual Information ◽  
Brain Networks ◽  
Brain Network ◽  
Network Efficiency ◽  
Characteristic Path Length ◽  
Anatomical Space ◽  
The Brain

Alzheimer’s disease (AD) is a progressive disease that causes problems of cognitive and memory functions decline. Patients with AD usually lose their ability to manage their daily life. Exploring the progression of the brain from normal controls (NC) to AD is an essential part of human research. Although connection changes have been found in the progression, the connection mechanism that drives these changes remains incompletely understood. The purpose of this study is to explore the connection changes in brain networks in the process from NC to AD, and uncovers the underlying connection mechanism that shapes the topologies of AD brain networks. In particular, we propose a mutual information brain network model (MINM) from the perspective of graph theory to achieve our aim. MINM concerns the question of estimating the connection probability between two cortical regions with the consideration of both the mutual information of their observed network topologies and their Euclidean distance in anatomical space. In addition, MINM considers establishing and deleting connections, simultaneously, during the networks modeling from the stage of NC to AD. Experiments show that MINM is sufficient to capture an impressive range of topological properties of real brain networks such as characteristic path length, network efficiency, and transitivity, and it also provides an excellent fit to the real brain networks in degree distribution compared to experiential models. Thus, we anticipate that MINM may explain the connection mechanism for the formation of the brain network organization in AD patients.

scholarly journals Altered Small-World Functional Network Topology in Patients with Optic Neuritis: A Resting-State fMRI Study

2021 ◽  
Vol 2021 ◽  
pp. 1-9
Author(s):  
Ke Song ◽  
Juan Li ◽  
Yuanqiang Zhu ◽  
Fang Ren ◽  
Lingcan Cao ◽  
...  
Keyword(s):  
Resting State ◽  
Path Length ◽  
Small World ◽  
Brain Network ◽  
Clustering Coefficient ◽  
Control Group ◽  
Network Efficiency ◽  
Characteristic Path Length ◽  
Brain Functional Connectivity ◽  
The Brain

Aim. This study investigated changes in small-world topology and brain functional connectivity in patients with optic neuritis (ON) by resting-state functional magnetic resonance imaging (rs-fMRI) and based on graph theory. Methods. A total of 21 patients with ON (8 males and 13 females) and 21 matched healthy control subjects (8 males and 13 females) were enrolled and underwent rs-fMRI. Data were preprocessed and the brain was divided into 116 regions of interest. Small-world network parameters and area under the integral curve (AUC) were calculated from pairwise brain interval correlation coefficients. Differences in brain network parameter AUCs between the 2 groups were evaluated with the independent sample t -test, and changes in brain connection strength between ON patients and control subjects were assessed by network-based statistical analysis. Results. In the sparsity range from 0.08 to 0.48, both groups exhibited small-world attributes. Compared to the control group, global network efficiency, normalized clustering coefficient, and small-world value were higher whereas the clustering coefficient value was lower in ON patients. There were no differences in characteristic path length, local network efficiency, and normalized characteristic path length between groups. In addition, ON patients had lower brain functional connectivity strength among the rolandic operculum, medial superior frontal gyrus, insula, median cingulate and paracingulate gyri, amygdala, superior parietal gyrus, inferior parietal gyrus, supramarginal gyrus, angular gyrus, lenticular nucleus, pallidum, superior temporal gyrus, and cerebellum compared to the control group ( P < 0.05 ). Conclusion. Patients with ON show typical “small world” topology that differed from that detected in HC brain networks. The brain network in ON has a small-world attribute but shows reduced and abnormal connectivity compared to normal subjects and likely causes symptoms of cognitive impairment.

scholarly journals Efficient search for informational cores in complex systems: Application to brain networks

2020 ◽  
Author(s):  
Jun Kitazono ◽  
Ryota Kanai ◽  
Masafumi Oizumi
Keyword(s):  
Mutual Information ◽  
Loss Function ◽  
Brain Networks ◽  
Computation Time ◽  
Exact Algorithm ◽  
Brain Network ◽  
Information Loss ◽  
Brain Functions ◽  
Large Systems ◽  
The Brain

AbstractTo understand the nature of the complex behavior of the brain, one important step is to identify “cores” in the brain network, where neurons or brain areas strongly interact with each other. Cores can be considered as essential sub-networks for brain functions. In the last few decades, an information-theoretic approach to identifying cores has been developed. In this approach, many-to-many nonlinear interactions between parts are measured by an information loss function, which quantifies how much information would be lost if interactions between parts were removed. Then, a core called a “complex” is defined as a subsystem wherein the amount of information loss is locally maximal. Although identifying complexes can be a novel and useful approach to revealing essential properties of the brain network, its practical application is hindered by the fact that computation time grows exponentially with system size. Here we propose a fast and exact algorithm for finding complexes, called Hierarchical Partitioning for Complex search (HPC). HPC finds complexes by hierarchically partitioning systems to narrow down candidates for complexes. The computation time of HPC is polynomial, which is dramatically smaller than exponential. We prove that HPC is exact when an information loss function satisfies a mathematical property, monotonicity. We show that mutual information is one such information loss function. We also show that a broad class of submodular functions can be considered as such information loss functions, indicating the expandability of our framework to the class. In simulations, we show that HPC can find complexes in large systems (up to several hundred) in a practical amount of time when mutual information is used as an information loss function. Finally, we demonstrate the use of HPC in electrocorticogram recordings from monkeys. HPC revealed temporally stable and characteristic complexes, indicating that it can be reliably utilized to characterize brain networks.Author summaryAn important step in understanding the nature of the brain is to identify “cores” in the brain network, which can be considered as essential areas for brain functions and cognition. In the last few decades, a novel definition of cores has been developed, which takes account of many-to-many interactions among elements of the network. Although considering many-to-many interactions can be important in understanding the complex brain network, identifying cores in large systems has been impossible because of the extremely large computational costs required. Here, we propose a fast and exact algorithm for finding cores. We show that the proposed algorithm enables us to find cores in large systems consisting of several hundred elements in a practical amount of time. We applied our algorithm to electrocorticogram recordings from a monkey that monitored electrical activity of the brain with electrodes placed directly on the brain surface, and demonstrated that there are stable and characteristic core structures in the brain network. This result indicates that our algorithm can be reliably applied to uncovering the essential network structures of the brain.

scholarly journals Altered small-world functional network topology in patients with optic neuritis: A resting- state fMRI study

2020 ◽  
Author(s):  
Ke Song ◽  
Juan Li ◽  
Yuanqiang Zhu ◽  
Fang Ren ◽  
Lingcan Cao ◽  
...  
Keyword(s):  
Resting State ◽  
Path Length ◽  
Small World ◽  
Brain Network ◽  
Clustering Coefficient ◽  
Control Group ◽  
Network Efficiency ◽  
Characteristic Path Length ◽  
Brain Functional Connectivity ◽  
The Brain

AbstractPurposeThis study investigated changes in small-world topology and brain functional connectivity in patients with optic neuritis (ON) by resting-state functional magnetic resonance imaging (rs-fMRI) and based on graph theory.MethodsA total of 21 patients with ON (8 males and 13 females) and 21 matched healthy control subjects (8 males and 13 females) were enrolled at the First Affiliated Hospital of Nanchang University and underwent rs-fMRI. Data were preprocessed and the brain was divided into 116 regions of interest. Small-world network parameters and area under the integral curve (AUC) were calculated from pairwise brain interval correlation coefficients. Differences in brain network parameter AUCs between the 2 groups were evaluated with the independent sample t-test, and changes in brain connection strength between ON patients and control subjects were assessed by network-based statistical analysis.ResultsIn the sparsity range from 0.08 to 0.48, both groups exhibited small-world attributes.Compared to the control group, global network efficiency, normalized clustering coefficient, and small-world value were higher whereas the clustering coefficient value was lower in ON patients. There were no differences in characteristic path length, local network efficiency, and normalized characteristic path length between groups. In addition, ON patients had lower brain functional connectivity strength among the rolandic operculum, medial superior frontal gyrus, insula, median cingulate and paracingulate gyri, amygdala, superior parietal gyrus, inferior parietal gyrus, supramarginal gyrus, angular gyrus, lenticular nucleus, pallidum, superior temporal gyrus, cerebellum_Crus1_L, and left cerebellum_Crus6_L compared to the control group (P < 0.05).ConclusionThe brain network in ON has a small-world attributes but shows reduced and abnormal connectivity compared to normal subjects. These findings provide a further insight into the neural pathogenesis of ON and reveal specific fMRI findings that can serve as diagnostic and prognostic indices.

scholarly journals Effects of a Motor Imagery Task on Functional Brain Network Community Structure in Older Adults: Data from the Brain Networks and Mobility Function (B-NET) Study

2021 ◽  
Vol 11 (1) ◽  
pp. 118
Author(s):  
Blake R. Neyland ◽  
Christina E. Hugenschmidt ◽  
Robert G. Lyday ◽  
Jonathan H. Burdette ◽  
Laura D. Baker ◽  
...  
Keyword(s):  
Older Adults ◽  
Graph Theory ◽  
Community Structure ◽  
Resting State ◽  
Brain Networks ◽  
Brain Network ◽  
Functional Brain ◽  
Network Community ◽  
Functional Brain Networks ◽  
The Brain

Elucidating the neural correlates of mobility is critical given the increasing population of older adults and age-associated mobility disability. In the current study, we applied graph theory to cross-sectional data to characterize functional brain networks generated from functional magnetic resonance imaging data both at rest and during a motor imagery (MI) task. Our MI task is derived from the Mobility Assessment Tool–short form (MAT-sf), which predicts performance on a 400 m walk, and the Short Physical Performance Battery (SPPB). Participants (n = 157) were from the Brain Networks and Mobility (B-NET) Study (mean age = 76.1 ± 4.3; % female = 55.4; % African American = 8.3; mean years of education = 15.7 ± 2.5). We used community structure analyses to partition functional brain networks into communities, or subnetworks, of highly interconnected regions. Global brain network community structure decreased during the MI task when compared to the resting state. We also examined the community structure of the default mode network (DMN), sensorimotor network (SMN), and the dorsal attention network (DAN) across the study population. The DMN and SMN exhibited a task-driven decline in consistency across the group when comparing the MI task to the resting state. The DAN, however, displayed an increase in consistency during the MI task. To our knowledge, this is the first study to use graph theory and network community structure to characterize the effects of a MI task, such as the MAT-sf, on overall brain network organization in older adults.

scholarly journals Brain network dynamics correlate with personality traits

2019 ◽  
Author(s):  
Aya Kabbara ◽  
Veronique Paban ◽  
Arnaud Weill ◽  
Julien Modolo ◽  
Mahmoud Hassan
Keyword(s):  
Functional Connectivity ◽  
Personality Traits ◽  
Resting State ◽  
Brain Networks ◽  
Neural Substrates ◽  
Brain Network ◽  
Functional Brain ◽  
Human Connectome Project ◽  
Functional Brain Networks ◽  
The Brain

AbstractIntroductionIdentifying the neural substrates underlying the personality traits is a topic of great interest. On the other hand, it is now established that the brain is a dynamic networked system which can be studied using functional connectivity techniques. However, much of the current understanding of personality-related differences in functional connectivity has been obtained through the stationary analysis, which does not capture the complex dynamical properties of brain networks.ObjectiveIn this study, we aimed to evaluate the feasibility of using dynamic network measures to predict personality traits.MethodUsing the EEG/MEG source connectivity method combined with a sliding window approach, dynamic functional brain networks were reconstructed from two datasets: 1) Resting state EEG data acquired from 56 subjects. 2) Resting state MEG data provided from the Human Connectome Project. Then, several dynamic functional connectivity metrics were evaluated.ResultsSimilar observations were obtained by the two modalities (EEG and MEG) according to the neuroticism, which showed a negative correlation with the dynamic variability of resting state brain networks. In particular, a significant relationship between this personality trait and the dynamic variability of the temporal lobe regions was observed. Results also revealed that extraversion and openness are positively correlated with the dynamics of the brain networks.ConclusionThese findings highlight the importance of tracking the dynamics of functional brain networks to improve our understanding about the neural substrates of personality.

scholarly journals Percolation Analysis of Brain Structural Network

2021 ◽  
Vol 9 ◽  
Author(s):  
Shu Guo ◽  
Xiaoqi Chen ◽  
Yimeng Liu ◽  
Rui Kang ◽  
Tao Liu ◽  
...  
Keyword(s):  
Failure Modes ◽  
Critical Infrastructure ◽  
Network Reliability ◽  
Brain Connectivity ◽  
Brain Networks ◽  
Structural Features ◽  
Brain Network ◽  
Structure Design ◽  
Reliability Design ◽  
The Brain

The brain network is one specific type of critical infrastructure networks, which supports the cognitive function of biological systems. With the importance of network reliability in system design, evaluation, operation, and maintenance, we use the percolation methods of network reliability on brain networks and study the network resistance to disturbances and relevant failure modes. In this paper, we compare the brain networks of different species, including cat, fly, human, mouse, and macaque. The differences in structural features reflect the requirements for varying levels of functional specialization and integration, which determine the reliability of brain networks. In the percolation process, we apply different forms of disturbances to the brain networks based on metrics that characterize the network structure. Our findings suggest that the brain networks are mostly reliable against random or k-core-based percolation with their structure design, yet becomes vulnerable under betweenness or degree-based percolation. Our results might be useful to identify and distinguish brain connectivity failures that have been shown to be related to brain disorders, as well as the reliability design of other technological networks.

Graph Theory-Based Brain Network Connectivity Analysis and Classification of Alzheimer’s Disease

2021 ◽  
Author(s):  
A. Thushara ◽  
C. Ushadevi Amma ◽  
Ansamma John
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Graph Theory ◽  
Neurodegenerative Disorder ◽  
Brain Networks ◽  
Network Connectivity ◽  
Brain Regions ◽  
Brain Network ◽  
Fiber Tracts ◽  
The Brain

Alzheimer’s Disease (AD) is basically a progressive neurodegenerative disorder associated with abnormal brain networks that affect millions of elderly people and degrades their quality of life. The abnormalities in brain networks are due to the disruption of White Matter (WM) fiber tracts that connect the brain regions. Diffusion-Weighted Imaging (DWI) captures the brain’s WM integrity. Here, the correlation betwixt the WM degeneration and also AD is investigated by utilizing graph theory as well as Machine Learning (ML) algorithms. By using the DW image obtained from Alzheimer’s Disease Neuroimaging Initiative (ADNI) database, the brain graph of each subject is constructed. The features extracted from the brain graph form the basis to differentiate between Mild Cognitive Impairment (MCI), Control Normal (CN) and AD subjects. Performance evaluation is done using binary and multiclass classification algorithms and obtained an accuracy that outperforms the current top-notch DWI-based studies.

scholarly journals Mindfulness Meditation Is Related to Long-Lasting Changes in Hippocampal Functional Topology during Resting State: A Magnetoencephalography Study

2018 ◽  
Vol 2018 ◽  
pp. 1-9 ◽  
Author(s):  
Anna Lardone ◽  
Marianna Liparoti ◽  
Pierpaolo Sorrentino ◽  
Rosaria Rucco ◽  
Francesca Jacini ◽  
...  
Keyword(s):  
Resting State ◽  
Mindfulness Meditation ◽  
Brain Connectivity ◽  
Brain Networks ◽  
Brain Network ◽  
Long Term Effects ◽  
Age Related ◽  
Functional Topology ◽  
The Right ◽  
The Brain

It has been suggested that the practice of meditation is associated to neuroplasticity phenomena, reducing age-related brain degeneration and improving cognitive functions. Neuroimaging studies have shown that the brain connectivity changes in meditators. In the present work, we aim to describe the possible long-term effects of meditation on the brain networks. To this aim, we used magnetoencephalography to study functional resting-state brain networks in Vipassana meditators. We observed topological modifications in the brain network in meditators compared to controls. More specifically, in the theta band, the meditators showed statistically significant (p corrected = 0.009) higher degree (a centrality index that represents the number of connections incident upon a given node) in the right hippocampus as compared to controls. Taking into account the role of the hippocampus in memory processes, and in the pathophysiology of Alzheimer’s disease, meditation might have a potential role in a panel of preventive strategies.

scholarly journals Intra- and Inter-Modular Connectivity Alterations in the Brain Structural Network of Spinocerebellar Ataxia Type 3

Entropy ◽  
2019 ◽  
Vol 21 (3) ◽  
pp. 317 ◽  
Author(s):  
Chi-Wen Jao ◽  
Bing-Wen Soong ◽  
Tzu-Yun Wang ◽  
Hsiu-Mei Wu ◽  
Chia-Feng Lu ◽  
...  
Keyword(s):  
Spinocerebellar Ataxia ◽  
Brain Networks ◽  
Structural Connectivity ◽  
Three Dimensional ◽  
Brain Network ◽  
Spinocerebellar Ataxia Type ◽  
Compensatory Mechanisms ◽  
Spinocerebellar Ataxia Type 3 ◽  
Type 3 ◽  
The Brain

In addition to cerebellar degeneration symptoms, patients with spinocerebellar ataxia type 3 (SCA3) exhibit extensive involvements with damage in the prefrontal cortex. A network model has been proposed for investigating the structural organization and functional mechanisms of clinical brain disorders. For neural degenerative diseases, a cortical feature-based structural connectivity network can locate cortical atrophied regions and indicate how their connectivity and functions may change. The brain network of SCA3 has been minimally explored. In this study, we investigated this network by enrolling 48 patients with SCA3 and 48 healthy subjects. A novel three-dimensional fractal dimension-based network was proposed to detect differences in network parameters between the groups. Copula correlations and modular analysis were then employed to categorize and construct the structural networks. Patients with SCA3 exhibited significant lateralized atrophy in the left supratentorial regions and significantly lower modularity values. Their cerebellar regions were dissociated from higher-level brain networks, and demonstrated decreased intra-modular connectivity in all lobes, but increased inter-modular connectivity in the frontal and parietal lobes. Our results suggest that the brain networks of patients with SCA3 may be reorganized in these regions, with the introduction of certain compensatory mechanisms in the cerebral cortex to minimize their cognitive impairment syndrome.

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