Caries-associated Salivary Microbiota of Children at Mixed Dentition from Different Geographic Locations

2021 ◽  
Author(s):  
Shanshan Li ◽  
Shi Huang ◽  
Ying Zhang ◽  
Lijuan Zhang ◽  
Fan Li ◽  
...  
Keyword(s):  
Bacterial Species ◽  
Alpha Diversity ◽  
Mixed Dentition ◽  
Diagnostic Model ◽  
Human Populations ◽  
Healthy Children ◽  
Microbial Composition ◽  
Model Based ◽  
Geographical Regions ◽  
Salivary Microbiota

Abstract The microbial composition of dental caries may depend on age, diet, and geography, yet the effect of geography on these microbiomes is largely underexplored. Here, we profiled and compared saliva microbiota from 130 individuals aged 6 to 8 years old, representing both healthy children (H) and children with severe caries (C) from two geographical regions of China: Qingdao Guangzhou. First, the saliva microbiota exhibited profound differences in diversity and composition between the C and H groups. The caries microbiota featured a lower alpha diversity and more variable community structure than the healthy microbiota. Furthermore, the relative abundance of several genera (e.g., Lactobacillus, Gemella and Cryptobacterium) was significantly higher in the C group than in the H group. Next, geography dominated over disease status in shaping salivary microbiota, and a wide array of salivary bacteria was highly predictive of the individuals’ city of origin. Finally, we built a universal diagnostic model based on 14 bacterial species, which can diagnose caries with 87% and 85% accuracy within each city and 83% accuracy across cities. These findings demonstrated that despite the large effect size of geography, a universal model based on salivary microbiota has the potential to diagnose caries across human populations.

scholarly journals Geographic Variation Did Not Affect the Predictive Power of Salivary Microbiota for Caries in Children With Mixed Dentition

2021 ◽  
Vol 11 ◽  
Author(s):  
Shanshan Li ◽  
Shi Huang ◽  
Yi Guo ◽  
Ying Zhang ◽  
Lijuan Zhang ◽  
...  
Keyword(s):  
Dental Caries ◽  
Bacterial Species ◽  
Mixed Dentition ◽  
Diagnostic Model ◽  
Healthy Children ◽  
Oral Diseases ◽  
Microbial Composition ◽  
Model Based ◽  
Geographical Regions ◽  
Salivary Microbiota

Dental caries is one of the most prevalent chronic oral diseases, affecting approximately half of children worldwide. The microbial composition of dental caries may depend on age, oral health, diet, and geography, yet the effect of geography on these microbiomes is largely underexplored. Here, we profiled and compared saliva microbiota from 130 individuals aged 6 to 8 years old, representing both healthy children (H group) and children with caries-affected (C group) from two geographical regions of China: a northern city (Qingdao group) and a southern city (Guangzhou group). First, the saliva microbiota exhibited profound differences in diversity and composition between the C and H groups. The caries microbiota featured a lower alpha diversity and more variable community structure than the healthy microbiota. Furthermore, the relative abundance of several genera (e.g., Lactobacillus, Gemella, Cryptobacterium and Mitsuokella) was significantly higher in the C group than in the H group (p<0.05). Next, geography dominated over disease status in shaping salivary microbiota, and a wide array of salivary bacteria was highly predictive of the individuals’ city of origin. Finally, we built a universal diagnostic model based on 14 bacterial species, which can diagnose caries with 87% (AUC=86.00%) and 85% (AUC=91.02%) accuracy within each city and 83% accuracy across cities (AUC=92.17%). Although the detection rate of Streptococcus mutans in populations is not very high, it could be regarded as a single biomarker to diagnose caries with decent accuracy. These findings demonstrated that despite the large effect size of geography, a universal model based on salivary microbiota has the potential to diagnose caries across the Chinese child population.

scholarly journals Association between changes in salivary microbiota with glucose levels during pregnancy – findings from a pilot study

2020 ◽  
Author(s):  
Xin Zhang ◽  
Pei Wang ◽  
Liangkun Ma ◽  
Rongjun Guo ◽  
Yongjing Zhang ◽  
...  
Keyword(s):  
Information Processing ◽  
Pregnant Women ◽  
Early Stage ◽  
Fasting Blood Glucose ◽  
Alpha Diversity ◽  
Oral Microbiota ◽  
Microbial Composition ◽  
Health Maintenance ◽  
Maternal Characteristics ◽  
Salivary Microbiota

Abstract Background : Microbial shifts that correspond to host variations during pregnancy are vital in health maintenance. Significant changes have been reported in the oral microbiota of pregnant women when compared with nonpregnant women, but little is known about the dynamic shifts in oral microbiota during the pregnancy course. Methods : In this study, changes in salivary microbiota in 81 healthy pregnant women throughout the early stage (G1: 9-14 weeks), middle stage (G2: 21-28 weeks), and late stage (G3: 31-38 weeks) were investigated with 16S rRNA sequencing techniques. Correlations between salivary microbiota and maternal characteristics, including fasting blood glucose (FBG) levels, were evaluated. Results : Alpha diversity indexes were stable throughout pregnancy, but significant changes were found in beta diversity measured by weighted and unweighted UniFrac distances. Fourteen dominant trimester-specific taxa were identified using the LEfSe method, including Bacteroidetes in G1, Proteobacteria in G2 and Firmicutes in G3 at the phylum level. Tax4Fun prediction analysis revealed significant changes in Genetic Information Processing, Environmental Information Processing, Unclassified and Human Diseases in G2 and in Metabolism in G3 when compared to G1. Significant correlations were found between FBG levels and microbial composition, and these correlations were independent of gestational diabetes mellitus (GDM) status. Conclusion : Within the limitations of this study, the dynamic changes in salivary microbiota during pregnancy were characterized, and beyond pregnancy, FBG was also involved in shaping the salivary microbiota.

scholarly journals Microbiome Analysis of Three Sample Types Obtained From Mixed Dentition Children With Different Caries Statuses: A Cross-Sectional Survey

2020 ◽  
Author(s):  
Xiaoxia Yang ◽  
Lidan He ◽  
Siqi Yan ◽  
Xinyi Chen ◽  
Guoying Que
Keyword(s):  
Streptococcus Mutans ◽  
Mixed Dentition ◽  
Deciduous Teeth ◽  
Scaling Analysis ◽  
Healthy Children ◽  
Cross Sectional Survey ◽  
Microbial Composition ◽  
Cross Sectional ◽  
Supragingival Plaque ◽  
Selenomonas Noxia

Abstract Background: Both supragingival plaque and saliva are commonly sampled for analysis of microbial communities. However, it remains unclear whether saliva can replace supragingival plaque for microbial studies of caries. There are limited studies on whether the microbiota of healthy first permanent molar (FPM) differs in different caries statuses of deciduous teeth. Herein, the PacBio Sequel platform was used to identify microbiome between three types of oral samples. Additionally, we compared the microbia between children with caries and healthy children in the same kind of microhabitat.Methods: In total, 30 children (aged 7–9 years) were enrolled in this study; 15 of them had dental caries. DNA was extracted from supragingival plaques of deciduous molars, supragingival plaques of maxillary FPMs, and saliva, and the v1–v9 regions of 16S rRNA was amplified. Additionally, PacBio sequencing and bioinformatic analyses were performed.Results: The salivary microbial alpha diversity were lower than that of the supragingival plaque on the teeth, but three was no difference between deciduous teeth and FPMs. Nonmetric multidimensional scaling analysis showed that the saliva samples were mainly scattered in the left side, whereas most plaque samples were distributed on the right. In the same microhabitat , there was no difference in microbial alpha and beta diverty between children with caries and healthy children. For the samples of the deciduous teeth, Streptococcus mutans, Propionibacterium acidifaciens, and Veillonella dispar were more abundant in the children with caries than healthy children, and the first two bacteria showed a positive correlation. For the samples of the FPMs, Selenomonas noxia was more abundant in healthy children than children with caries. But no differentially abundant microorganism were identified between the saliva subgroups. Conclusion:The microbial composition and struction of supragingival plaque was different from that of saliva, and supragingival plaque was found to be the best candidate for studying caries etiology. Streptococcus mutans, Veillonella dispar, and Propionibacterium acidifaciens are highly associated with the existence of deciduous caries. The microbia of the supragingival plaque on the healthy FPMs resemble when the caries status of the deciduous teeth was different, except for the abundance of Selenomonas noxia.

A study of the correlation between chalazion and intestinal flora in chinese children

2020 ◽  
Author(s):  
Yuanyue Cui ◽  
Lei Song ◽  
Xie Li ◽  
Ting Qiu ◽  
Jing Jin ◽  
...  
Keyword(s):  
Relative Abundance ◽  
Diversity Index ◽  
Bacterial Species ◽  
Intestinal Flora ◽  
Meibomian Gland ◽  
Control Group ◽  
Healthy Children ◽  
Gut Flora ◽  
Microbial Composition ◽  
Significant Difference

Abstract BackgroundChalazion is a chronic inflammatory granuloma of the meibomian gland formed on the basis of the obstruction of the meibomian gland drainage duct and the retention of secretions. It is one of the most common clinically eye diseases in children. Chronic inflammation of the meibomian glands is responsible for this disease, and the gut flora is thought to be involved in the inflammatory process. In this study, we investigated the relationship between intestinal microbial composition and children's chalazion.MethodsFecal samples were collected from 21 children with chalazion and 26 healthy children. DNA was extracted from fecal stool samples and 16S rRNA sequences in the gut flora were detected by using second second-generation sequencing technology. The results were used to compare the composition of the microbiome between patients and healthy controls.ResultsAccording to Alpha Diversity and Beta Diversity analysis, we found that there was no significant difference in bacteria diversity and relative abundance between the two groups. We compared the flora of the control group and the diseased group through Lefse analysis, and screened out 11 different species. Based on the absolute abundance of species, 43 different species were selected. Anosim analysis and metastats analysis were used to compare the flora of the control group and the diseased group again. At the species level, we found that gut_metagenome and human_gut_metagenome are the common differences in species levels obtained from the above analysis. Finally, corrplot correlation analysis was performed, suggesting that gut_metagenome has a great correlation with the number, ulceration, and recurrence of chalazion in children.ConclusionsThere was no significant difference in the diversity index and relative abundance of flora in children with chalazion compared with healthy children, but there were significant differences in some bacterial species. The gut_metagenome strains identified in this study were significantly related to the growth, ulceration, and relapse of children with chalazion. It is suggested that gut_metagenome may be a microbiological indicator which is independent of clinicopathologic factors but associated with chalazion disease .* These authors have contributed equally to this work.

scholarly journals Salivary Microbial Dysbiosis Is Associated With Peri-Implantitis: A Case-Control Study in a Brazilian Population

2022 ◽  
Vol 11 ◽  
Author(s):  
Debora Pallos ◽  
Vanessa Sousa ◽  
Magda Feres ◽  
Belen Retamal-Valdes ◽  
Tsute Chen ◽  
...  
Keyword(s):  
Beta Diversity ◽  
Bacterial Species ◽  
Hypervariable Region ◽  
Alpha Diversity ◽  
Rrna Gene ◽  
Microbial Composition ◽  
Microbiome Composition ◽  
Ion Torrent Pgm ◽  
Microbial Dysbiosis ◽  
Haemophilus Parainfluenzae

Background and ObjectivesThe aim of this study was to examine the salivary microbiome in healthy peri-implant sites and those with peri-implantitis.MethodsSaliva samples were collected from 21 participants with healthy peri-implant sites and 21 participants with peri-implantitis. The V4 hypervariable region of the 16S rRNA gene was sequenced using the Ion Torrent PGM System (Ion 318™ Chip v2 400). The NGS analysis and composition of the salivary microbiome were determined by taxonomy assignment. Downstream bioinformatic analyses were performed in QIIME (v 1.9.1).ResultsClinical differences according to peri-implant condition status were found. Alpha diversity metrics revealed that the bacterial communities of participants with healthy peri-implant sites tended to have a richer microbial composition than individuals with peri-implantitis. In terms of beta diversity, bleeding on probing (BoP) may influence the microbial diversity. However, no clear partitioning was noted between the salivary microbiome of volunteers with healthy peri-implant sites or volunteers with peri-implantitis. The highest relative abundance of Stenotrophomonas, Enterococcus and Leuconostoc genus, and Faecalibacterium prausnitzii, Haemophilus parainfluenzae, Prevotella copri, Bacteroides vulgatus, and Bacteroides stercoris bacterial species was found in participants with peri-implantitis when compared with those with healthy peri-implant sites.ConclusionDifferences in salivary microbiome composition were observed between patients with healthy peri-implant sites and those with peri-implantitis. BoP could affect the diversity (beta diversity) of the salivary microbiome.

scholarly journals Microbiota Changes in Fathers Consuming a High Prebiotic Fiber Diet Have Minimal Effects on Male and Female Offspring in Rats

Nutrients ◽  
2021 ◽  
Vol 13 (3) ◽  
pp. 820
Author(s):  
Faye Chleilat ◽  
Alana Schick ◽  
Raylene A. Reimer
Keyword(s):  
Beta Diversity ◽  
Control Diet ◽  
Gastrointestinal Hormones ◽  
Alpha Diversity ◽  
Female Offspring ◽  
Sprague Dawley ◽  
Microbial Composition ◽  
Gut Hormone ◽  
Satiety Hormone ◽  
Prebiotic Fiber

Background: Consuming a diet high in prebiotic fiber has been associated with improved metabolic and gut microbial parameters intergenerationally, although studies have been limited to maternal intake with no studies examining this effect in a paternal model. Method: Male Sprague Dawley rats were allocated to either (1) control or (2) oligofructose-supplemented diet for nine weeks and then mated. Offspring consumed control diet until 16 weeks of age. Bodyweight, body composition, glycemia, hepatic triglycerides, gastrointestinal hormones, and gut microbiota composition were measured in fathers and offspring. Results: Paternal energy intake was reduced, while satiety inducing peptide tyrosine tyrosine (PYY) gut hormone was increased in prebiotic versus control fathers. Increased serum PYY persisted in female prebiotic adult offspring. Hepatic triglycerides were decreased in prebiotic fathers with a similar trend (p = 0.07) seen in female offspring. Gut microbial composition showed significantly reduced alpha diversity in prebiotic fathers at 9 and 12 weeks of age (p < 0.001), as well as concurrent differences in beta diversity (p < 0.001), characterized by differences in Bifidobacteriaceae, Lactobacillaceae and Erysipelotrichaceae, and particularly Bifidobacterium animalis. Female prebiotic offspring had higher alpha diversity at 3 and 9 weeks of age (p < 0.002) and differences in beta diversity at 15 weeks of age (p = 0.04). Increases in Bacteroidetes in female offspring and Christensenellaceae in male offspring were seen at nine weeks of age. Conclusions: Although paternal prebiotic intake before conception improves metabolic and microbiota outcomes in fathers, effects on offspring were limited with increased serum satiety hormone levels and changes to only select gut bacteria.

scholarly journals The Influence of Diet and Sex on the Gut Microbiota of Lean and Obese JCR:LA-cp Rats

2021 ◽  
Vol 9 (5) ◽  
pp. 1037
Author(s):  
Craig Resch ◽  
Mihir Parikh ◽  
J. Alejandro Austria ◽  
Spencer D. Proctor ◽  
Thomas Netticadan ◽  
...  
Keyword(s):  
Gut Microbiota ◽  
Control Diet ◽  
Bacterial Species ◽  
Alpha Diversity ◽  
Short Chain Fatty Acids ◽  
Female Rats ◽  
Dependent Manner ◽  
Male And Female ◽  
Ground Flaxseed ◽  
The Impact

There is an increased interest in the gut microbiota as it relates to health and obesity. The impact of diet and sex on the gut microbiota in conjunction with obesity also demands extensive systemic investigation. Thus, the influence of sex, diet, and flaxseed supplementation on the gut microbiota was examined in the JCR:LA-cp rat model of genetic obesity. Male and female obese rats were randomized into four groups (n = 8) to receive, for 12 weeks, either (a) control diet (Con), (b) control diet supplemented with 10% ground flaxseed (CFlax), (c) a high-fat, high sucrose (HFHS) diet, or (d) HFHS supplemented with 10% ground flaxseed (HFlax). Male and female JCR:LA-cp lean rats served as genetic controls and received similar dietary interventions. Illumine MiSeq sequencing revealed a richer microbiota in rats fed control diets rather than HFHS diets. Obese female rats had lower alpha-diversity than lean female; however, both sexes of obese and lean JCR rats differed significantly in β-diversity, as their gut microbiota was composed of different abundances of bacterial types. The feeding of an HFHS diet affected the diversity by increasing the phylum Bacteroidetes and reducing bacterial species from phylum Firmicutes. Fecal short-chain fatty acids such as acetate, propionate, and butyrate-producing bacterial species were correspondingly impacted by the HFHS diet. Flax supplementation improved the gut microbiota by decreasing the abundance of Blautia and Eubacterium dolichum. Collectively, our data show that an HFHS diet results in gut microbiota dysbiosis in a sex-dependent manner. Flaxseed supplementation to the diet had a significant impact on gut microbiota diversity under both flax control and HFHS dietary conditions.

scholarly journals Is Intestinal Bacterial Diversity Enhanced by Trans-Species Spread in the Mixed-Species Flock of Hooded Crane (Grus monacha) and Bean Goose (Anser fabalis) Wintering in the Lower and Middle Yangtze River Floodplain?

Animals ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 233
Author(s):  
Zhuqing Yang ◽  
Lizhi Zhou
Keyword(s):  
Contact Time ◽  
Alpha Diversity ◽  
Gut Bacteria ◽  
Species Flock ◽  
Mixed Species ◽  
Microbial Composition ◽  
Indirect Contact ◽  
Hooded Crane ◽  
Bean Goose ◽  
Intestinal Pathogens

Diversity of gut microbes is influenced by many aspects, including the host internal factors and even direct or indirect contact with other birds, which is particularly important for mixed-species wintering waterbird flocks. In this study, Illumina high-throughput sequencing was used to analyze the intestinal bacteria of the hooded crane and bean goose whose niches overlap at Shengjin Lake. We tested whether contact time enhances the trans-species spread of gut bacteria. Results indicate alpha-diversity and microbial composition displayed significant separation between the two hosts in every wintering period, although the number of bacteria types shared increased with increasing contact time. For the same species, with the lengthening of contact time, alpha-diversity and the number of operational taxonomic units (OTUs) in the host intestine augmented, and the common OTUs and structural similarity of microflora in the middle and late periods were more than in the early and middle periods. In addition, we found a very high proportion of shared pathogens. Our results indicate that, although intestinal microflora of different species were separated, direct or indirect contact in the mixed-species flock caused the spread of gut bacteria trans-species, indicating that more attention should be paid to intestinal pathogens in wild birds.

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