scholarly journals Investigation of sources, diversity, and variability of bacterial aerosols in Athens, Greece: a pilot study

Author(s):  
Angelina Metaxatos ◽  
Sydonia Manibusan ◽  
Gediminas Mainelis

Abstract This study is the first attempt to describe the composition, diversity, and potential sources of bacterial aerosols in the urban air of Athens by DNA barcoding (analysis of 16S rRNA genes). It is also the first field application of the recently developed Rutgers Electrostatic Passive Sampler (REPS) to study the microbial diversity of aerosols. Three sampling campaigns 6–10 days in duration were conducted in the summer and fall of 2019. The completely passive REPS captured a sufficient amount of biological material to demonstrate the diversity of airborne bacteria and their variability over time. Overall, in the air of Athens, 793 OTUs were detected. Firmicutes, Proteobacteria, and Actinobacteria were the dominant Phyla, while the Cyanobacteria, Bacteroidetes, and Fusobacteria were the minor Phyla. The observed Phyla were further classified into 54 families. The families with high prevalence across our samples contained genera known to have pathogenic species, e.g., Streptococcus, Corynebacterium, Gemella, Pseudomonas, Staphylococcus, Neisseria; many species belonging to human or animal commensal microbiota were also detected. The paper discusses the likely sources of observed airborne bacteria, including soil, plants, animals, humans. Given the variability in bacterial composition over time, it is obvious that the contribution of those sources to airborne microbiota is dynamic. However, a more accurate linkage between the sources and airborne bacteria requires further study. Also, the exact functional and ecological role and, even more importantly, the impact of observed bacterial aerosols on public health and the ecosystem is still unknown and required further analysis.

Atmosphere ◽  
2021 ◽  
Vol 13 (1) ◽  
pp. 45
Author(s):  
Angelina Metaxatos ◽  
Sydonia Manibusan ◽  
Gediminas Mainelis

We characterized the composition, diversity, and potential bacterial aerosol sources in Athens’ urban air by DNA barcoding (analysis of 16S rRNA genes) during three seasons in 2019. Air samples were collected using the recently developed Rutgers Electrostatic Passive Sampler (REPS). It is the first field application of REPS to study bacterial aerosol diversity. REPS samplers captured a sufficient amount of biological material to demonstrate the diversity of airborne bacteria and their variability over time. Overall, in the air of Athens, we detected 793 operational taxonomic units (OTUs), which were fully classified into the six distinct taxonomic categories (Phylum, Class, Order, etc.). These OTUs belonged to Phyla Actinobacteria, Firmicutes, Proteobacteria, Bacteroidetes, Cyanobacteria, and Fusobacteria. We found a complex community of bacterial aerosols with several opportunistic or potential pathogens in Athens’ urban air. Referring to the available literature, we discuss the likely sources of observed airborne bacteria, including soil, plants, animals, and humans. Our results on bacterial diversity are comparable to earlier studies, even though the sampling sites are different or geographically distant. However, the exact functional and ecological role of bioaerosols and, even more importantly, their impact on public health and the ecosystem requires further air monitoring and analysis.


mBio ◽  
2015 ◽  
Vol 6 (2) ◽  
Author(s):  
Roxana J. Hickey ◽  
Xia Zhou ◽  
Matthew L. Settles ◽  
Julie Erb ◽  
Kristin Malone ◽  
...  

ABSTRACTPuberty is an important developmental stage wherein hormonal shifts mediate the physical and physiological changes that lead to menarche, but until now, the bacterial composition of vaginal microbiota during this period has been poorly characterized. We performed a prospective longitudinal study of perimenarcheal girls to gain insight into the timing and sequence of changes that occur in the vaginal and vulvar microbiota during puberty. The study enrolled 31 healthy, premenarcheal girls between the ages of 10 and 12 years and collected vaginal and vulvar swabs quarterly for up to 3 years. Bacterial composition was characterized by Roche 454 pyrosequencing and classification of regions V1 to V3 of 16S rRNA genes. Contrary to expectations, lactic acid bacteria, primarily Lactobacillus spp., were dominant in the microbiota of most girls well before the onset of menarche in the early to middle stages of puberty.Gardnerella vaginaliswas detected at appreciable levels in approximately one-third of subjects, a notable finding considering that this organism is commonly associated with bacterial vaginosis in adults. Vulvar microbiota closely resembled vaginal microbiota but often exhibited additional taxa typically associated with skin microbiota. Our findings suggest that the vaginal microbiota of girls begin to resemble those of adults well before the onset of menarche.IMPORTANCEThis study addresses longitudinal changes in vaginal and vulvar microbial communities prior to and immediately following menarche. The research is significant because microbial ecology of the vagina is an integral aspect of health, including resistance to infections. The physiologic changes of puberty and initiation of cyclic menstruation are likely to have profound effects on vaginal microbiota, but almost nothing is known about changes that normally occur during this time. Our understanding has been especially hampered by the lack of thorough characterization of microbial communities using techniques that do not rely on the cultivation of fastidious bacteria, as well as a dearth of studies on girls in the early to middle stages of puberty. This study improves our understanding of the normal development of vaginal microbiota during puberty and onset of menarche and may better inform clinical approaches to vulvovaginal care of adolescent girls.


Animals ◽  
2019 ◽  
Vol 9 (11) ◽  
pp. 925
Author(s):  
Zhao ◽  
Min ◽  
Zheng ◽  
Wang

Heat stress negatively impacts the health and milk production of dairy cows, and ruminal microbial populations play an important role in dairy cattle’s milk production. Currently there are no available studies that investigate heat stress-associated changes in the rumen microbiome of lactating dairy cattle. Improved understanding of the link between heat stress and the ruminal microbiome may be beneficial in developing strategies for relieving the influence of heat stress on ruminants by manipulating ruminal microbial composition. In this study, we investigated the ruminal bacterial composition and metabolites in heat stressed and non-heat stressed dairy cows. Eighteen lactating dairy cows were divided into two treatment groups, one with heat stress and one without heat stress. Dry matter intake was measured and rumen fluid from all cows in both groups was collected. The bacterial 16S rRNA genes in the ruminal fluid were sequenced, and the rumen pH and the lactate and acetate of the bacterial metabolites were quantified. Heat stress was associated with significantly decreased dry matter intake and milk production. Rumen pH and rumen acetate concentrations were significantly decreased in the heat stressed group, while ruminal lactate concentration increased. The influence of heat stress on the microbial bacterial community structure was minor. However, heat stress was associated with an increase in lactate producing bacteria (e.g., Streptococcus and unclassified Enterobacteriaceae), and with an increase in Ruminobacter, Treponema, and unclassified Bacteroidaceae, all of which utilize soluble carbohydrates as an energy source. The relative abundance of acetate-producing bacterium Acetobacter decreased during heat stress. We concluded that heat stress is associated with changes in ruminal bacterial composition and metabolites, with more lactate and less acetate-producing species in the population, which potentially negatively affects milk production.


2020 ◽  
Author(s):  
Lucian Staicu ◽  
Mikolaj Dziurzynski ◽  
Adrian Gorecki ◽  
Gavin Collins ◽  
Simon Mills ◽  
...  

<p>Selenium (Se) is one of the latest chemical elements identified as a terminal electron acceptor in anaerobic respiration. Before this important discovery, Se was mainly known for its toxicity and its limited use as an essential element for microbial metabolism (Staicu et al., 2019). This study screened the presence of selenium respiratory genes/operons and the impact of selenium on the microbial community from a methanogenic anaerobic granular sludge. The inoculum was collected from a full-scale bioreactor treating dairy wastewater (Ireland). To identify the presence of selenium respiration, the following primers were designed: for selenate, SeO<sub>4</sub><sup>2-</sup> (Thauera selenatis, Bacillus selenatarsenatis SF-1) and for selenite, SeO<sub>3</sub><sup>2-</sup> (Bacillus selenitireducens MLS10). The primers were designed based on the available sequences and refined using the UniPriVal algorithm developed by our group at University of Warsaw. Apart from Se respiration, the study also investigated the change in bacterial diversity using 16S rRNA genes as a function of incubation time and exposure to selenate (with acetate as electron donor) and selenite (with lactate as e-donor). An additional focus of the study attempted to shed light into the biomineralization of elemental Se, Se<sup>0</sup>, since this process is still not fully understood (e.g. intracellular vs extracellular nucleation, growth of the particles by an Ostwald-like ripening process) (Staicu and Barton, 2017). The results indicate the high contribution of Archaea (22% - 37%) to the community of the granular sludge. The addition of 10 mM selenate/selenite did not have an impact on the Archaean community, nor did it trigger the reduction of selenate/selenite to Se<sup>0</sup> via a known respiratory pathway. On the other hand, selenium addition did not particularly affect the community structure. There was a shift towards Bacteroidetes during the 7-day incubation period, with a high and consistent contribution of Firmicutes over Bacilli, which are putative host of selenate and selenite reductases. Furthermore, no significant Betaproteobacteria (Thauera selenatis) were identified, other putative host of selenate reductase. The biogenic Se<sup>0</sup> particles were localized both outside and at the intracellular level, displaying polydisperse size distribution (<100-500 nm), indicative of different biomineralization mechanisms involved. Overall, this dataset indicates the reduction of selenium might be a purely detoxification process in methanogenic Archaea-dominated microbial communities, which brings into question the use of high energy-dense selenium oxyanions for respiratory purposes in certain biogeochemical conditions. Alternatively, this might emphasize the uncharted respiratory potential of selenium, since the process was reported to have diverse ecosystem distribution (Steinberg and Oremland, 1990).</p> <p><strong>Reference</strong></p> <p>Staicu LC, Barton LL (2017) Microbial metabolism of selenium – for survival or profit. In: Bioremediation of selenium contaminated wastewaters, van Hullebusch ED (Ed.), Springer, 1-31.</p> <p>Staicu LC, Simon S, Guibaud G et al. (2019) Biogeochemistry of trace elements in anaerobic digesters. In: Trace elements in anaerobic biotechnologies, Fermoso FF et al. (Eds.), IWA, 23-50.</p> <p>Steinberg NA, Oremland RS (1990) Dissimilatory selenate reduction potentials in a diversity of sediment types. Appl Environ Microbiol 56, 3550-57.</p>


Author(s):  
Ishanee Jahagirdar

Silver nanoparticles (AgNPs) have been shown to be highly toxic to certain organisms and can induce stress in cells. The purpose of this study is twofold: first, to examine the stress response to AgNP exposure on Drosophila melanogaster (fruit fly) larvae, and secondly, to determine if exposure to AgNPs alters the intestinal bacterial composition. To answer these questions, fruit flies were grown on food mixed with AgNPs. Larvae were monitored for their ability to escape from heat stress and their climbing ability before metamorphosis into pupae. Larval wandering behaviour was examined by devising a test to determine if they could crawl their way back to food. In order to examine the flora in the digestive tract, DNA was isolated from dissected larval intestines, purified and then a relatively conserved portion of the bacterial DNA was amplified. These samples were then sent for pyrosequencing, which is a technique that will allow us to examine the composition of the intestinal microbial population. Preliminary results have been mixed. There has been some suggestion of a stress response, but this has not been very consistent. Therefore, more experiments need to be done. However, the bacterial population of the gut does seem to change after the treatment, indicating that AgNP exposure results in altered microbial composition in D. melanogaster intestines. It is hoped that this research will help elucidate our understanding of the impact NPs have on organisms, which is highly relevant because of the high prevalence of NPs in consumer and medicinal materials.  


2004 ◽  
Vol 70 (5) ◽  
pp. 2577-2587 ◽  
Author(s):  
Manuel Pesaro ◽  
Gilles Nicollier ◽  
Josef Zeyer ◽  
Franco Widmer

ABSTRACT Prior to registration of crop protection products (CPPs) their persistence in soil has to be determined under defined conditions. For this purpose, soils are collected in the field and stored for up to 3 months prior to the tests. During storage, stresses like drying may induce changes in microbiological soil characteristics (MSCs) and thus may influence CPP degradation rates. We investigated the influence of soil storage-related stress on the resistance and resilience of different MSCs by assessing the impact of a single severe drying-rewetting cycle and by monitoring recovery from this event for 34 days. The degradation and mineralization of the fungicide metalaxyl-M and the insecticide lufenuron were delayed by factors of 1.5 to 5.4 in the dried and rewetted soil compared to the degradation and mineralization in an undisturbed reference. The microbial biomass, as estimated by direct cell counting and from the soil DNA content, decreased on average by 51 and 24%, respectively. The bulk microbial activities, as determined by measuring substrate-induced respiration and fluorescein diacetate hydrolysis, increased after rewetting and recovered completely within 6 days after reequilibration. The effects on Bacteria, Archaea, and Pseudomonas were investigated by performing PCR amplification of 16S rRNA genes and reverse-transcribed 16S rRNA, followed by restriction fragment length polymorphism (RFLP) and terminal RFLP (T-RFLP) fingerprinting. Statistical analyses of RFLP and T-RFLP profiles indicated that specific groups in the microbial community were sensitive to the stress. In addition, evaluation of rRNA genes and rRNA as markers for monitoring the stress responses of microbial communities revealed overall similar sensitivities. We concluded that various structural and functional MSCs were not resistant to drying-rewetting stress and that resilience depended strongly on the parameter investigated.


2020 ◽  
Vol 2020 ◽  
pp. 1-8 ◽  
Author(s):  
Christian Apolinaris Lombogia ◽  
Max Tulung ◽  
Jimmy Posangi ◽  
Trina Ekawati Tallei

Understanding the honeybee gut bacteria is an essential aspect as honeybees are the primary pollinators of many crops. In this study, the honeybee-associated gut bacteria were investigated by targeting the V3-V4 region of 16S rRNA genes using the Illumina MiSeq. The adult worker was captured in an urban area in a dense settlement. In total, 83,018 reads were obtained, revealing six phyla from 749 bacterial operational taxonomic units (OTUs). The gut was dominated by Proteobacteria (58% of the total reads, including Enterobacteriaceae 28.2%, Erwinia 6.43%, and Klebsiella 4.90%), Firmicutes (29% of the total reads, including Lactococcus garvieae 13.45%, Lactobacillus spp. 8.19%, and Enterococcus spp. 4.47%), and Actinobacteria (8% of the total reads, including Bifidobacterium spp. 7.96%). Many of these bacteria belong to the group of lactic acid bacteria (LAB), which was claimed to be composed of beneficial bacteria involved in maintaining a healthy host. The honeybee was identified as Apis nigrocincta based on an identity BLAST search of its COI region. This study is the first report on the gut microbial community structure and composition of A. nigrocincta from Indonesia.


2021 ◽  
Vol 9 (10) ◽  
pp. 2141
Author(s):  
Ji Young Jung ◽  
Sang-Soo Han ◽  
Z-Hun Kim ◽  
Myung Hoo Kim ◽  
Hye Kyeong Kang ◽  
...  

Lactic acid bacteria (LAB) are probiotic candidates that may restore the balance of microbiota populations in intestinal microbial ecosystems by controlling pathogens and thereby promoting host health. The goal of this study was to isolate potential probiotic LAB strains and characterize their antimicrobial abilities against pathogens in intestinal microbiota. Among 54 LAB strains isolated from fermented products, five LAB strains (NSMJ15, NSMJ16, NSMJ23, NSMJ42, and NFFJ04) were selected as potential probiotic candidates based on in vitro assays of acid and bile salt tolerance, cell surface hydrophobicity, adhesion to the intestinal epithelium, and antagonistic activity. Phylogenetic analysis based on 16S rRNA genes showed that they have high similarities of 99.58–100% to Lacticaseibacillus paracasei strains NSMJ15 and NFFJ04, Lentilactobacillus parabuchneri NSMJ16, Levilactobacillus brevis NSMJ23, and Schleiferilactobacillus harbinensis NSMJ42. To characterize their antimicrobial abilities against pathogens in intestinal microbiota, the impact of cell-free supernatant (CFS) treatment in 10% (v/v) fecal suspensions prepared using pooled cattle feces was investigated using in vitro batch cultures. Bacterial community analysis using rRNA amplicon sequencing for control and CFS-treated fecal samples at 8 and 16 h incubation showed the compositional change after CFS treatment for all five LAB strains. The changed compositions were similar among them, but there were few variable increases or decreases in some bacterial groups. Interestingly, as major genera that could exhibit pathogenicity and antibiotic resistance, the members of Bacillus, Escherichia, Leclercia, Morganella, and Vagococcus were decreased at 16 h in all CFS-treated samples. Species-level classification suggested that the five LAB strains are antagonistic to gut pathogens. This study showed the probiotic potential of the five selected LAB strains; in particular, their antimicrobial properties against pathogens present in the intestinal microbiota. These strains would therefore seem to play an important role in modulating the intestinal microbiome of the host.


2015 ◽  
Vol 114 (5) ◽  
pp. 746-755 ◽  
Author(s):  
Sabine A. Tanner ◽  
Christophe Lacroix ◽  
Christophe Del’Homme ◽  
Christoph Jans ◽  
Annina Zihler Berner ◽  
...  

Modulating the gut microbiota via dietary interventions is a common strategy to enhance the natural defence mechanisms of the host. Several in vitro studies have highlighted the probiotic potential of Bifidobacterium thermophilum RBL67 (RBL67) selected for its anti-Salmonella effects. The present study aimed to investigate the impact of RBL67 alone and combined with fructo-oligosaccharides (FOS) on the gut microbiota of Göttingen minipigs. Minipigs were fed a basal diet supplemented with 8 g/d probiotic powder (1×109 CFU/g in skim milk matrix) (probiotic diet (PRO)), 8 g/d probiotic powder plus 8 g/d FOS (synbiotic diet (SYN)) or 8 g/d skim milk powder (control), following a cross-sectional study design. Faecal and caecal microbiota compositions were analysed with pyrosequencing of 16S rRNA genes and quantitative PCR. Metabolic activity in the caecum and colon was measured by HPLC. 16S rRNA gene amplicon sequencing revealed that minipig faeces show close similarity to pig microbiota. During the treatments and at the time of killing of animals, RBL67 was consistently detected in faeces, caecum and colon at numbers of 105–106 16S rRNA copies/g content after feeding PRO and SYN diets. At the time of killing of animals, significantly higher Bifidobacterium numbers in the caecum and colon of SYN-fed minipigs were measured compared with PRO. Our data indicate that the Göttingen minipig may be a suitable model for gut microbiota research in pigs. Data from this first in vivo study of RBL67 colonisation suggest that the combination with FOS may represent a valuable symbiotic strategy to increase probiotic bacteria levels and survival in gastrointestinal tracts for feed and food applications.


2011 ◽  
Vol 78 (5) ◽  
pp. 1361-1369 ◽  
Author(s):  
Johanna Sjöstedt ◽  
Per Koch-Schmidt ◽  
Mikael Pontarp ◽  
Björn Canbäck ◽  
Anders Tunlid ◽  
...  

ABSTRACTA bacterial community may be resistant to environmental disturbances if some of its species show metabolic flexibility and physiological tolerance to the changing conditions. Alternatively, disturbances can change the composition of the community and thereby potentially affect ecosystem processes. The impact of disturbance on the composition of bacterioplankton communities was examined in continuous seawater cultures. Bacterial assemblages from geographically closely connected areas, the Baltic Sea (salinity 7 and high dissolved organic carbon [DOC]) and Skagerrak (salinity 28 and low DOC), were exposed to gradual opposing changes in salinity and DOC over a 3-week period such that the Baltic community was exposed to Skagerrak salinity and DOC and vice versa. Denaturing gradient gel electrophoresis and clone libraries of PCR-amplified 16S rRNA genes showed that the composition of the transplanted communities differed significantly from those held at constant salinity. Despite this, the growth yields (number of cells ml−1) were similar, which suggests similar levels of substrate utilization. Deep 454 pyrosequencing of 16S rRNA genes showed that the composition of the disturbed communities had changed due to the recruitment of phylotypes present in the rare biosphere of the original community. The study shows that members of the rare biosphere can become abundant in a bacterioplankton community after disturbance and that those bacteria can have important roles in maintaining ecosystem processes.


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