Similarity Learning between Patients with Large Age-Gap: Model Development and Validation Study (Preprint)

2021 ◽  
Author(s):  
Seung-yeoun Kang ◽  
Jeong-hoon Mo

BACKGROUND Similarity-based machine-learning methodologies are suitable for personalized prediction and recommendation research, which is actively applied in healthcare field along with the generalization of EHR data. In particular, the similarity learning model which carefully reflects age can be efficiently used in predicting chronic diseases, closely related to ageing. OBJECTIVE We aimed to design a similarity model for patients in different age-groups in order to predict the two major chronic diseases: Diabetes and Hypertension. METHODS We developed an idea about learning the overlapping periods of two individuals by moving the viewpoint of them to future and past respectively. From this idea, we build separated similarity learning models through three sequential age-group intervals; 30-40, 40-50, 50-60 age-groups intervals. Each model has same structure based on deep neural network. For similarity learning, we set several demographic/bi-annual check-up information and diagnosis records as input features and disease based yes-or-no similarity labels as output features. RESULTS As a result of applying hypertension patients’ pair, diabetes patients’ pair, and non-diabetes/diabetes patient pair to our methodology, the similarity value was very high, close to 1 in the former two cases, and the similarity value was low, close to zero, in the last case. This proves that similarity learning appropriately reflects the disease status between individuals. In addition, we tried to find out how the conventional single-timepoint methodology and our methodology differ in the measurement of similarity for several special cases in which the patient's disease condition changes. As a result, it was found that the similarity results between the existing methodology and our methodology differ from at least 0.2 to at most 0.9 in four special cases where the patient's condition changes. This suggests that our methodology responds more sensitively to the patient's condition changing over time and can be applied more efficiently to disease prediction in those cases. CONCLUSIONS We developed an age-sensitive similarity learning model for personalized prediction of chronic diseases targeting Koreans. As a result, for the cases that patient's disease pattern changes, by designing and learning a deep similarity learning model using divided age groups which has not been previously attempted, we have shown that similarity learning results are better than conventional single-timepoint methodology. Moreover, we proposed the possibility of overcoming data shortage limitations that occur frequently in medical datasets through a similarity learning model considering patients’ age differences.

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Thomas Yates ◽  
Francesco Zaccardi ◽  
Nazrul Islam ◽  
Cameron Razieh ◽  
Clare L. Gillies ◽  
...  

Abstract Background Although age, obesity and pre-existing chronic diseases are established risk factors for COVID-19 outcomes, their interactions have not been well researched. Methods We used data from the Clinical Characterisation Protocol UK (CCP-UK) for Severe Emerging Infection developed by the International Severe Acute Respiratory and emerging Infections Consortium (ISARIC). Patients admitted to hospital with COVID-19 from 6th February to 12th October 2020 were included where there was a coded outcome following hospital admission. Obesity was determined by an assessment from a clinician and chronic disease by medical records. Chronic diseases included: chronic cardiac disease, hypertension, chronic kidney disease, chronic pulmonary disease, diabetes and cancer. Mutually exclusive categories of obesity, with or without chronic disease, were created. Associations with in-hospital mortality were examined across sex and age categories. Results The analysis included 27,624 women with 6407 (23.2%) in-hospital deaths and 35,065 men with 10,001 (28.5%) in-hospital deaths. The prevalence of chronic disease in women and men was 66.3 and 68.5%, respectively, while that of obesity was 12.9 and 11.1%, respectively. Association of obesity and chronic disease status varied by age (p < 0.001). Under 50 years of age, obesity and chronic disease were associated with in-hospital mortality within 28 days of admission in a dose-response manner, such that patients with both obesity and chronic disease had the highest risk with a hazard ratio (HR) of in-hospital mortality of 2.99 (95% CI: 2.12, 4.21) in men and 2.16 (1.42, 3.26) in women compared to patients without obesity or chronic disease. Between the ages of 50–69 years, obesity and chronic disease remained associated with in-hospital COVID-19 mortality, but survival in those with obesity was similar to those with and without prevalent chronic disease. Beyond the age of 70 years in men and 80 years in women there was no meaningful difference between those with and without obesity and/or chronic disease. Conclusion Obesity and chronic disease are important risk factors for in-hospital mortality in younger age groups, with the combination of chronic disease and obesity being particularly important in those under 50 years of age. These findings have implications for targeted public health interventions, vaccination strategies and in-hospital clinical decision making.


Vaccines ◽  
2021 ◽  
Vol 9 (1) ◽  
pp. 18
Author(s):  
Lise Boey ◽  
Eline Bosmans ◽  
Liane Braz Ferreira ◽  
Nathalie Heyvaert ◽  
Melissa Nelen ◽  
...  

Patients with chronic diseases are at increased risk of complications following infection. It remains, however, unknown to what extend they are protected against vaccine-preventable diseases. We assessed seroprevalence of antibodies against diphtheria, tetanus and pertussis to evaluate whether current vaccination programs in Belgium are adequate. Antibody titers were assessed with a bead-based multiplex assay in serum of 1052 adults with chronic diseases. We included patients with diabetes mellitus type 1 (DM1) (n = 172), DM2 (n = 77), chronic kidney disease (n = 130), chronic obstructive pulmonary disease (COPD) (n = 170), heart failure (n = 77), HIV (n = 196) and solid organ transplant (SOT) recipients (n = 230). Factors associated with seroprevalence were analysed with multiple logistic regression. We found seroprotective titers in 29% for diphtheria (≥0.1 IU/mL), in 83% for tetanus (≥0.1 IU/mL) and 22% had antibodies against pertussis (≥5 IU/mL). Seroprotection rates were higher (p < 0.001) when vaccinated within the last ten years. Furthermore, diphtheria seroprotection decreased with age (p < 0.001). Tetanus seroprotection was less reached in women (p < 0.001) and older age groups (p < 0.001). For pertussis, women had more often a titer suggestive of a recent infection or vaccination (≥100 IU/mL, p < 0.01). We conclude that except for tetanus, the vast majority of at-risk patients remains susceptible to vaccine-preventable diseases such as diphtheria and pertussis.


2018 ◽  
Vol 5 (suppl_1) ◽  
pp. S289-S289
Author(s):  
Woosuck Suh ◽  
Jong-Hyun Kim ◽  
Ji Hyen Hwang ◽  
Sodam Lee ◽  
Kang-Hee Lee ◽  
...  

Abstract Background The Republic of Korea has the highest incidence rate of tuberculosis (TB) among members of the OECD, reported as 78.8/100,000 population in 2016. In response, a state-run intensive contact investigation for TB is being conducted. More effective TB control requires an epidemiologic emphasis on the diagnosis and treatment of latent TB infections in children and adolescents, compared with other age groups. Here we present an analysis of data from the childcare center and school contact investigation by the Korea Centers for Disease Control and Prevention (CDC) in 2013–2015. Methods Data collected from index patients included age, sex, occupation, disease status, results of AFB smear/culture, and chest x-ray. Data collected from contacts included age, sex, results of serial tuberculin skin test (TST), and chest x-ray. Congregate settings included childcare centers, kindergartens, elementary and secondary schools, and age groups were stratified as follows: 0–4 years, 5–12 years, and 13–18 years. TSTs were considered positive if induration ≥10 mm on the first test (TST1) or demonstrated an increase ≥6 mm over the induration of TST1 on repeat testing after 8 weeks (TST2). Results Of the 197,801 subjects with data collected, 173,998 were eligible and included in our analysis. TST1 results were available for 159,346 (91.6%) and when results were positive, induration was 10–14 mm in 7.6% and ≥15 mm in 1.5%. TST2 results were available for 119,797 (82.7%) of the 144,904 with negative TST1, and conversion rate was 9.0%. Altogether considering TST1 and TST2, 17.3% contacts had latent TB infections. Positive rates of TST significantly decreased with age: 20.3% in 0–4 years, 18.8% in 5–12 years, 17.1% in 13–18 years. Conclusion In this 3-year school-setting contact investigation, 17.3% contacts were diagnosed with latent TB infection, as demonstrated by TST reactions. Positive rates of TST significantly but mildly decreased with age. Disclosures All authors: No reported disclosures.


Cancers ◽  
2021 ◽  
Vol 14 (1) ◽  
pp. 12
Author(s):  
Jose M. Castillo T. ◽  
Muhammad Arif ◽  
Martijn P. A. Starmans ◽  
Wiro J. Niessen ◽  
Chris H. Bangma ◽  
...  

The computer-aided analysis of prostate multiparametric MRI (mpMRI) could improve significant-prostate-cancer (PCa) detection. Various deep-learning- and radiomics-based methods for significant-PCa segmentation or classification have been reported in the literature. To be able to assess the generalizability of the performance of these methods, using various external data sets is crucial. While both deep-learning and radiomics approaches have been compared based on the same data set of one center, the comparison of the performances of both approaches on various data sets from different centers and different scanners is lacking. The goal of this study was to compare the performance of a deep-learning model with the performance of a radiomics model for the significant-PCa diagnosis of the cohorts of various patients. We included the data from two consecutive patient cohorts from our own center (n = 371 patients), and two external sets of which one was a publicly available patient cohort (n = 195 patients) and the other contained data from patients from two hospitals (n = 79 patients). Using multiparametric MRI (mpMRI), the radiologist tumor delineations and pathology reports were collected for all patients. During training, one of our patient cohorts (n = 271 patients) was used for both the deep-learning- and radiomics-model development, and the three remaining cohorts (n = 374 patients) were kept as unseen test sets. The performances of the models were assessed in terms of their area under the receiver-operating-characteristic curve (AUC). Whereas the internal cross-validation showed a higher AUC for the deep-learning approach, the radiomics model obtained AUCs of 0.88, 0.91 and 0.65 on the independent test sets compared to AUCs of 0.70, 0.73 and 0.44 for the deep-learning model. Our radiomics model that was based on delineated regions resulted in a more accurate tool for significant-PCa classification in the three unseen test sets when compared to a fully automated deep-learning model.


2020 ◽  
pp. 73-84
Author(s):  
Ike Lusi Meilina ◽  
Supriyono Koes Handayanto ◽  
Muhardjito Muhardjito

Modelling instruction is systematic instructional activity for constructing and applying scientific knowledge in Physics lesson. The purpose of this research is to determine the effect of Modelling instruction with different reasoning abilities on understanding physical concepts by controlling students’ prior knowledge. This research used experimental method with 2x2 factorial design with two Modelling instruction classes and two conventional classes with a total of 176 students. The instrument used was reasoning ability test, prior knowledge test, and physics concept test. It used LCTSR (Lawson’s Classroom Test of Scientific Reasoning) instrument. Prior knowledge test instruments consisted of 25 problems to identify how deep the students understand the topic before they undergo the learning process and physics concept test consisted of 25 problems. Based on the statistical test using two factor Ancova, it proved that there was a significant difference in students’ ability to master the physics concept between using Modelling instruction learning model and using conventional learning model. The result showed that the Modelling instruction increasing conceptual understanding better than conventional learning. There are two important parts in the Modelling instruction that are model development and model deployment. This study also confirms that there are significant differences in understanding the concepts between students of high reasoning ability and low reasoning ability. Students with high reasoning abilities have a better understanding of concepts than students with low reasoning abilities.


2019 ◽  
Vol 8 (1) ◽  
pp. 12-23
Author(s):  
KETUT SURA SUARDANA . ◽  
PROF.DR.I NYOMAN NATAJAYA, M.Pd. . ◽  
DR. NI KETUT WIDIARTINI, S.Pd.,M.Pd .

Penelitian ini bertujuan untuk mengembangkan model pembelajaran kooperatif tipe analogi setting sistem ngayah dengan asesmen portofolio bentuk formatif untuk siswa kelas X program keahlian teknik mesin SMKN 3 Singaraja pada mata pelajaran pekerjaan dasar teknik mesin. Pengembangan model pembelajaran dalam penelitian ini mengacu pada model prototyping menurut Nieveen yang dimulai dari (a) tahap studi pendahuluan, (b) tahap prototiping yang mencakup tahap desain, tahap evaluasi dan revisi, dan (c) tahap penilaian yang mencakup tahap ujicoba untuk menentukan penilaian kepraktisan model pembelajaran yang dikembangkan. Melalui proses pengembangan, telah dihasilkan: (1) sintaks, terdiri dari 6 fase, yakni: menyampaikan tujuan dan memotivasi siswa, mengorganisasi siswa kedalam kelompok belajar dan membagikan lembar kerja, menyajikan informasi dan melibatkan siswa dalam memahami konsep rujukan dan memperkenalkan konsep target, membimbing kelompok belajar dan bekerja sesuai konsep rujukan dan memodifikasi sesuai konsep target secara tolong menolong atau berbagi, menarik kesimpulan dan mengevaluasi, dan memberikan penghargaan, (2) sistem sosial, siswa aktif belajar dan bekerja, dapat bekerjasama, tolong menolong dan berbagi antar anggota kelompok, (3) prinsip reaksi, guru berperan sebagai fasilitator dan moderator, (4) sistem pendukung adalah RPP, job sheet dan asesmen portofolio, (5) dampak instruksional dan pengiring, terjadi peningkatan proses dan aktivitas siswa mengerjakan tugas-tugas prakteknya dan muncul sikap positif siswa terhadap pembelajaran praktek, serta terbentuknya budaya gotong royong. Berdasarkan analisis uji coba terbatas, hasil penelitian ini menunjukkan bahwa model pembelajaran kooperatif tipe analogi setting sistem ngayah beserta perangkat pendukung pembelajaran telah memenuhi kriteria valid dan praktis.Kata Kunci : pengembangan, pembelajaran kooperatif tipe analogi, sistem ngayah, portofolio This research aimed to develop Cooperative Learning Model Development of Ngayah system setting analogy type with Formative Portfolio assessment for 10th grade students of mechanical engineering program in SMKN 3 Singaraja in mechanical engineeringbasic lesson. Learning model development was based on prototyping model by Nieveen, started from (a) preliminary study stage, (b) prototyping stage, covers design stage, evaluation and revision stage, and (c) scoring stage, includes trials stage to determine learning model practicality scoring developed. Through development process, it produced: (1) syntax,consists of 6 phases, namely: conveying purposes and motivating students, organizing students into groups and distributing work sheets, providing information and involving the students in comprehending reference conceptand introducing target concept, guiding learning groups and working based on reference concept and modifying based on target concept by mutual helping or sharing, drawing conclusion and evaluating , and giving reward (2) social system, the students were actively learning and working and also be able to cooperate, to do mutual help, and to share between members. (3) reaction principal, the teacher was as facilitator and moderator, (4) supporting systems were lesson plan, job sheet and portfolio assessment, (5) instructional and adherent impact, there was process improvement and student’s activities in their practical tasks and students positive attitude toward practical learning, and also creating mutual cooperation culture. Based on limited trials analysis, the result of research shows that Cooperative Learning Model Development of Ngayah system setting analogy typewith its supporting tools has fulfilled valid and practicality criteria.keyword : analogy type of cooperative learning, development, Ngayah system, portfolio


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