scholarly journals Methods for management of soilborne plant pathogens

2017 ◽  
Vol 32 (1) ◽  
pp. 9-24 ◽  
Author(s):  
Milica Mihajlovic ◽  
Emil Rekanovic ◽  
Jovana Hrustic ◽  
Mila Grahovac ◽  
Brankica Tanovic
Keyword(s):  
Methyl Bromide ◽  
Agricultural Production ◽  
Plant Pathogens ◽  
Current Knowledge ◽  
Montreal Protocol ◽  
Economic Losses ◽  
Simultaneous Application ◽  
Soilborne Disease ◽  
Single Chemical ◽  
Soil Disinfection

Soilborne pathogens cause significant economic losses in agricultural production all over the world. These species can survive for many years in the absence of a host plant by forming persistent structures such as microsclerotia, sclerotia, chlamydospores or oospores. Consequently, soilborne diseases are particularly difficult to predict, detect, diagnose and successfully control. Over the past 30 years, a fumigant, methyl bromide, has been widely used for their control in many crops. In 1992, methyl bromide was listed as an ozone-depleting substance under the Montreal Protocol ? an international treaty to protect the ozone layer. During the phaseout of methyl bromide, problems generated in agricultural production made it clear that dependence on a single method or a single chemical should be avoided. The objective of this review paper was to summarize the current knowledge about different methods of soilborne disease control including: crop rotation, steam soil disinfection, soil amendments, hydroponics and soilless growing systems, soil solarization, grafting, biological control and use of natural compounds, and chemical control. Positive and negative aspects of all available methods were reviewed. Benefits, achieved by simultaneous application of several methods based on different mechanisms of actions, are discussed.

scholarly journals Draft Genome Sequence of “ Candidatus Phytoplasma oryzae” Strain Mbita1, the Causative Agent of Napier Grass Stunt Disease in Kenya

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Anne Fischer ◽  
Ivette Santana-Cruz ◽  
Lillian Wambua ◽  
Cassandra Olds ◽  
Charles Midega ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Agricultural Production ◽  
Plant Pathogens ◽  
Genomic Organization ◽  
Draft Genome ◽  
Napier Grass ◽  
Eastern Africa ◽  
Draft Genome Sequence ◽  
Economic Losses ◽  
Insight Into

Phytoplasmas are bacterial plant pathogens with devastating impact on agricultural production worldwide. In eastern Africa, Napier grass stunt disease causes serious economic losses in the smallholder dairy industry. This draft genome sequence of “ Candidatus Phytoplasma oryzae” strain Mbita1 provides insight into its genomic organization and the molecular basis of pathogenicity.

Biofumigation: Opportunities and Challenges for Control of Soilborne Diseases in Nursery Production

2018 ◽  
Vol 19 (4) ◽  
pp. 332-337 ◽  
Author(s):  
Fulya Baysal-Gurel ◽  
Prabha Liyanapathiranage ◽  
Jill Mullican
Keyword(s):  
Cover Crops ◽  
Methyl Bromide ◽  
Montreal Protocol ◽  
Phytophthora Nicotianae ◽  
Soilborne Diseases ◽  
Soilborne Disease ◽  
Flower Production ◽  
Row Crop ◽  
Nursery Production ◽  
Brassicaceae Family

Soilborne diseases reduce crop performance, increase costs to the nursery producers, and can cause potential ecological damage to the natural environment. In particular, soilborne diseases caused by Phytophthora nicotianae and Rhizoctonia solani are the most economically important problems of southeastern U.S. nursery producers. Methyl bromide was widely used as a standard treatment in many parts of the world until the implementation of the Montreal Protocol. Since then, many chemical and nonchemical soilborne disease management methods have been tested but are not yet providing effective and consistent results like methyl bromide. Cover crops that belong to the Brassicaceae family can be incorporated into the soil to control soilborne diseases, and this process is widely known as biofumigation. Glucosinolates that are available inside Brassicaceae plant cells can be hydrolyzed into isothiocyanates, and these compounds are proven to be highly biocidal to many microorganisms (including fungi, oomycetes, nematodes, and bacteria), insects, and germinating weed seeds. The use of biofumigant cover crops is a newer area of research in woody ornamental nursery production that has been previously explored most extensively in row crop, vegetable, fruit, and flower production. This review article compiles previous research observations in biofumigation while emphasizing the potential of biofumigation to control diseases in nursery production caused by soilborne pathogens.

scholarly journals The Effect of Gut Bacteria on the Physiology of Red Palm Weevil, Rhynchophorus ferrugineus Olivier and Their Potential for the Control of This Pest

Insects ◽  
2021 ◽  
Vol 12 (7) ◽  
pp. 594
Author(s):  
Qian-Xia Liu ◽  
Zhi-Ping Su ◽  
Hui-Hui Liu ◽  
Sheng-Ping Lu ◽  
Bing Ma ◽  
...  
Keyword(s):  
Molecular Mechanisms ◽  
Current Knowledge ◽  
Management Strategies ◽  
Gut Bacteria ◽  
Economic Losses ◽  
Rhynchophorus Ferrugineus ◽  
Intestinal Immunity ◽  
Red Palm Weevil ◽  
Nutrient Metabolism ◽  
Palm Weevil

Red Palm Weevil (RPW), Rhynchophorus ferrugineus Olivier, is a notorious pest, which infests palm trees and has caused great economic losses worldwide. At present, insecticide applications are still the main way to control this pest. However, pesticide resistance has been detected in the field populations of RPW. Thus, future management strategies based on the novel association biological control need be developed. Recent studies have shown that the intestinal tract of RPW is often colonized by multiple microbial species as mammals and model insects, and gut bacteria have been found to promote the growth, development and immune activity of RPW larvae by modulating nutrient metabolism. Furthermore, two peptidoglycan recognition proteins (PGRPs), PGRP-LB and PGRP-S1, can act as the negative regulators to modulate the intestinal immunity to maintain the homeostasis of gut bacteria in RPW larvae. Here, we summarized the current knowledge on the gut bacterial composition of RPW and their impact on the physiological traits of RPW larvae. In contrast with metazoans, it is much easier to make genetic engineered microbes to produce some active molecules against pests. From this perspective, because of the profound effects of gut bacteria on host phenotypes, it is promising to dissect the molecular mechanisms behind their effect on host physiology and facilitate the development of microbial resource-based management methods for pest control.

scholarly journals Injectisome T3SS Subunits As Potential Chaperones In The Extracellular Export of Pectobacterium Carotovorum Subsp. Carotovorum Bacteriocins Carocin S1 And Carocin S3 Secreted Via Flagellar T3SS

2021 ◽  
Author(s):  
Hang-Cheng Chen ◽  
Reymund C. Derilo ◽  
Han-Ling Chen ◽  
Tzu-Rung Li ◽  
Ruchi Briam James S. Lagitnay ◽  
...  
Keyword(s):  
Type Iii Secretion ◽  
Insertional Mutagenesis ◽  
Plant Pathogens ◽  
Soft Rot ◽  
Economic Losses ◽  
Pectobacterium Carotovorum ◽  
Secretion Systems ◽  
Unique Type ◽  
Bacterial Flagellum ◽  
Type Iii

Abstract Pectobacterium carotovorum subsp. carotovorum (Pcc) causes soft-rot disease in a wide variety of plants resulting in economic losses worldwide. It produces various types of bacteriocin to compete against related plant pathogens. Studies on how bacteriocins are extracellularly secreted are conducted to understand the mechanism of interbacterial competition. In this study, the secretion of the low-molecular-weight bacteriocins (LMWB) Carocin S1 and Carocin S3 produced by a multiple-bacteriocin producing strain of Pcc, 89-H-4, was investigated. Tn5 insertional mutagenesis was used to generate a mutant, TH22-6, incapable of LMWBs secretion. Sequence and homology analyses of the gene disrupted by transposon Tn5 insertion revealed that the gene sctT, an essential component of the injectisome type III secretion machinery (T3aSS), is required for the secretion of the bacteriocins. This result raised a question regarding the nature of the secretion mechanism of Pcc bacteriocins which was previously discovered to be secreted via T3bSS, a system that utilizes the bacterial flagellum for extracellular secretions. Our previous report has shown that bacteriocin Carocin S1 cannot be secreted by mutants that are defective of T3bSS-related genes such as flhA, flhC, flhD and fliC. We knocked out several genes making up the significant structural components of both T3aSS and T3bSS. The findings led us to hypothesize the potential roles of the T3aSS-related proteins, SctT, SctU and SctV, as flagellar T3SS chaperones in the secretion of Pcc bacteriocins. This current discovery and the findings of our previous study helped us to conceptualize a unique Type III secretion system for bacteriocin extracellular export which is a hybrid of the injectisome and flagellar secretion systems.

scholarly journals The Management Response to Wind Disturbances in European Forests

2021 ◽  
Author(s):  
Paula Sanginés de Cárcer ◽  
Piotr S. Mederski ◽  
Natascia Magagnotti ◽  
Raffaele Spinelli ◽  
Benjamin Engler ◽  
...  
Keyword(s):  
Current Knowledge ◽  
Economic Losses ◽  
Future Research ◽  
Forest Site ◽  
Negative Effects ◽  
Salvage Logging ◽  
Forest Ownership ◽  
Forest Ecosystem Services ◽  
Disturbance Management ◽  
Timber Market

Abstract Purpose of the Review The review synthesises the current knowledge of post-windstorm management in selected European countries in order to identify knowledge gaps and guide future research. Recent Findings Despite the differences in forest ownership and national regulations, management experiences in Europe converge at (1) the need for mechanization of post-windthrow management to ensure operator safety, (2) the importance to promote operator training and optimise the coordination between all the actors involved in disturbance management and (3) the need to implement measures to consolidate the timber market while restoring forest ecosystem services and maintain biodiversity. Summary Windstorms are natural disturbances that drive forest dynamics but also result in socio-economic losses. As the frequency and magnitude of wind disturbances will likely increase in the future, improved disturbance management is needed. We here highlight the best practices and remaining challenges regarding the strategic, operational, economic and environmental dimensions of post-windthrow management in Europe. Our literature review underlined that post-disturbance management needs to be tailored to each individual situation, taking into account the type of forest, site conditions, available resources and respective legislations. The perspectives on windthrown timber differ throughout Europe, ranging from leaving trees on site to storing them in sophisticated wet storage facilities. Salvage logging is considered important in forests susceptible to bark beetle outbreaks, while no salvage logging is recommended in forests protecting against natural hazards. Remaining research gaps include questions of balancing between the positive and negative effects of salvage logging and integrating climate change considerations more explicitly in post-windthrow management.

scholarly journals Genome Resources for the Ex-type of Phytophthora citricola, and well-authenticated isolates of P. hibernalis, P. nicotianae and P. syringae

2021 ◽  
Author(s):  
Subodh K. Srivastava ◽  
Leandra M. Knight ◽  
Mark K. Nakhla ◽  
Z. Gloria Abad
Keyword(s):  
Plant Pathogens ◽  
High Throughput Sequencing ◽  
Economic Losses ◽  
Biological Research ◽  
Type Specimens ◽  
High Coverage ◽  
Oxford Nanopore ◽  
Long Read ◽  
Basic And Applied Research ◽  
Diagnostic Applications

Phytophthora is one of the most important genera of plant pathogens with many members causing high economic losses world-wide. To build robust molecular identification systems, it is very important to have information from well-authenticated specimens and in preference the ex-type specimens. The reference genomes of well-authenticated specimens form a critical foundation for genetics, biological research, and diagnostic applications. In this study, we describe four draft Phytophthora genomes resources for the Ex-type of P. citricola BL34 (P0716 WPC) (118 contigs for 50 Mb), and well-authenticated specimens of P. syringae BL57G (P10330 WPC) (591 contigs for 75 Mb), P. hibernalis BL41G (P3822 WPC) (404 contigs for 84 Mb), and P. nicotianae BL162 (P6303 WPC) (3984 contigs for 108 Mb) generated with MinION long-read High-Throughput Sequencing (HTS) technology (Oxford Nanopore Technologies, ONT). Using the quality reads we assembled high coverage genomes of P. citricola with 291X coverage and 16,662 annotated genes; P. nicotianae with 205X coverage and 29,271 annotated genes; P. syringae with 76X coverage and 23,331 annotated genes, and P. hibernalis with 42X coverage and 21,762 annotated genes. With the availability of genomes sequences and its annotations, we predict that these draft genomes will be accommodating for various basic and applied research including diagnostics to protect global agriculture.

scholarly journals Effect of Soil Physical Conditions on Emission of Allyl Isothiocyanate and Subsequent Microbial Inhibition in Response to Brassicaceae Seed Meal Amendment

Plant Disease ◽  
2019 ◽  
Vol 103 (5) ◽  
pp. 846-852 ◽  
Author(s):  
Likun Wang ◽  
Mark Mazzola
Keyword(s):  
Growth Inhibition ◽  
Soil Water ◽  
Plant Pathogens ◽  
Soil Water Potential ◽  
Allyl Isothiocyanate ◽  
Pythium Ultimum ◽  
Seed Meal ◽  
Soilborne Disease ◽  
Physical Conditions ◽  
Orchard Soils

Generation of allyl isothiocyanate (AITC) in soil treated with residues of specific Brassicaceae species yields direct and indirect suppression of soilborne plant pathogens. Soil physical conditions demonstrably affected the quantity of AITC generated in response to soil incorporation of a Brassica juncea/Sinapis alba seed meal (SM) formulation. The concentration of AITC generated in SM-amended soil increased with an increase in temperature from 10 to 30°C. AITC emission was also elevated with an increase in soil water potential from −1,000 kPa through −40 kPa; however, a significant decrease in AITC emission was observed in a saturated soil environment (0 kPa). Peak AITC emission was obtained 2 to 3 h after SM amendment under optimal conditions but the peak was delayed in soils incubated at low temperature or in extreme moisture environments. Although AITC production varied significantly across different orchard soils, all three orchard soils yielded the same pattern of AITC release in response to SM amendment over the spectrum of soil water potentials examined in this study. Mycelial growth inhibition in fungi and oomycetes isolated from apple roots was dependent on both AITC concentration and exposure time. Pythium ultimum exhibited sensitivity to AITC at concentrations ranging from 0.01 to 0.22 µg g−1 of soil, whereas Hypocrea lixii was insensitive to AITC. Exposure to AITC at a concentration of 0.22 µg g−1 of soil for a period of 2 h restricted hyphal growth of Rhizoctonia solani AG-5, Ilyonectria destructans, and Mortierella alpina. R. solani AG-5 exhibited significant growth inhibition when incubated at AITC concentrations of 0.008 to 0.011 µg g−1 of soil for 10 h. These findings provide information that will be useful in the management of appropriate soil variables to obtain optimal yields of AITC in response to SM soil amendments and indicate that a standard soil moisture prescription may be suitable for use when applying this SM formulation for soilborne disease control.

scholarly journals Extreme Weather Events in Agriculture: A Systematic Review

2019 ◽  
Vol 11 (9) ◽  
pp. 2547 ◽  
Author(s):  
Alessia Cogato ◽  
Franco Meggio ◽  
Massimiliano De Antoni Migliorati ◽  
Francesco Marinello
Keyword(s):  
Agricultural Sector ◽  
Current Knowledge ◽  
Cropping Systems ◽  
Extreme Weather ◽  
Mitigation Measures ◽  
Extreme Weather Events ◽  
Economic Losses ◽  
Research Gaps ◽  
Weather Events ◽  
Major Interest

Despite the increase of publications focusing on the consequences of extreme weather events (EWE) for the agricultural sector, a specific review of EWE related to agriculture is missing. This work aimed at assessing the interrelation between EWE and agriculture through a systematic quantitative review of current scientific literature. The review analysed 19 major cropping systems (cereals, legumes, viticulture, horticulture and pastures) across five continents. Documents were extracted from the Scopus database and examined with a text mining tool to appraise the trend of publications across the years, the specific EWE-related issues examined and the research gaps addressed. The results highlighted that food security and economic losses due to the EWE represent a major interest of the scientific community. Implementation of remote sensing and imagery techniques for monitoring and detecting the effects of EWE is still underdeveloped. Large research gaps still lie in the areas concerning the effects of EWE on major cash crops (grapevine and tomato) and the agronomic dynamics of EWE in developing countries. Current knowledge on the physiological dynamics regulating the responses of main crops to EWE appears to be well established, while more research is urgently needed in the fields of mitigation measures and governance systems.

scholarly journals Effectiveness of Dunaliella salina Extracts against Bacillus subtilis and Bacterial Plant Pathogens

Pathogens ◽  
2020 ◽  
Vol 9 (8) ◽  
pp. 613
Author(s):  
Alfredo Ambrico ◽  
Mario Trupo ◽  
Rosaria Magarelli ◽  
Roberto Balducchi ◽  
Angelo Ferraro ◽  
...  
Keyword(s):  
Antibacterial Activity ◽  
Pseudomonas Syringae ◽  
Dunaliella Salina ◽  
Plant Pathogens ◽  
Plant Diseases ◽  
Economic Losses ◽  
Tomato Plants ◽  
Hexane Extracts

Several bacteria pathogens are responsible for plant diseases causing significant economic losses. The antibacterial activity of Dunaliella salina microalgae extracts were investigated in vitro and in vivo. First, biomass composition was chemically characterized and subjected to extraction using polar/non-polar solvents. The highest extraction yield was obtained using chloroform:methanol (1:1 v/v) equal to 170 mg g−1 followed by ethanol (88 mg g−1) and hexane (61 mg g−1). In vitro examination of hexane extracts of Dunaliella salina demonstrated antibacterial activity against all tested bacteria. The hexane extract showed the highest amount of β-carotene with respect to the others, so it was selected for subsequent analyses. In vivo studies were also carried out using hexane extracts of D. salina against Pseudomonas syringae pv. tomato and Pectobacterium carotovorum subsp. carotovorum on young tomato plants and fruits of tomato and zucchini, respectively. The treated young tomato plants exhibited a reduction of 65.7% incidence and 77.0% severity of bacterial speck spot disease. Similarly, a reduction of soft rot symptoms was observed in treated tomato and zucchini fruits with a disease incidence of 5.3% and 12.6% with respect to 90.6% and 100%, respectively, for the positive control.

scholarly journals Systematic Identification of Pathogenic Streptomyces sp. AMCC400023 That Causes Common Scab and Genomic Analysis of Its Pathogenicity Island

2019 ◽  
Vol 109 (7) ◽  
pp. 1115-1128 ◽  
Author(s):  
Feiyang Liang ◽  
Rongshan Lin ◽  
Yaqian Yao ◽  
Yunli Xiao ◽  
Mingshuo Zhang ◽  
...  
Keyword(s):  
Common Scab ◽  
Taxonomic Status ◽  
Pathogenicity Island ◽  
Economic Losses ◽  
Whole Genome ◽  
Streptomyces Species ◽  
Streptomyces Sp ◽  
Soilborne Disease ◽  
Thaxtomin A ◽  
Genome Level

Potato scab, a serious soilborne disease caused by Streptomyces spp., occurs in potato-growing areas worldwide and results in severe economic losses. In this paper, the pathogenicity of Streptomyces strain AMCC400023, isolated from potato scabs in Hebei Province, China, was verified systematically by the radish seedling test, the potato tuber slice assay, the potted back experiment, and the detection of phytotoxin thaxtomin A. Morphological, physiological, and biochemical characteristics were determined, and the 16S ribosomal RNA analyses of Streptomyces sp. AMCC400023 were carried out. To obtain the accurate taxonomic status of the pathogen strain, the whole genome was sequenced, and the phylogenetic tree among 31 Streptomyces genomes was formed. The average nucleotide identity (ANI) and in silico DNA-DNA hybridization (isDDH) were analyzed, and at the same time, the toxicity-related genes between Streptomyces sp. AMCC400023 and Streptomyces scabiei were compared, all based on the whole-genome level. All of the data supported that, instead of a member of S. scabiei, test strain Streptomyces sp. AMCC400023 was a distinct phytopathogen of potato common scab, which had a relatively close relationship with S. scabiei while separating clearly from S. scabiei at least in the species level of taxonomic status. The complete pathogenicity island (PAI) composition of Streptomyces sp. AMCC400023 was identified, which contained a toxin region and a colonization region. It was conjectured that the PAI of Streptomyces sp. AMCC400023 might be directly or indirectly acquired from S. scabiei 87-22 by horizontal gene transfer, or at the very least, there was a very close homologous relationship between the two pathogens as indicated by a series of analyses, such as phylogenetic relationships among 31 Streptomyces species, ANI and isDDH analyses, PAI structure mapping, thaxtomin A synthetic gene cluster tree construction, and most important, the collinearity analysis at the genome level.

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