scholarly journals Visible-Light Triggered Templated Ligation on Surface Using Furan-Modified PNAs

Author(s):  
Alex Manicardi ◽  
Enrico Cadoni ◽  
Annemieke Madder

Oligonucleotide-templated reactions are frequently exploited for target detection in biosensors and for the construction of DNA-based materials and probes in nanotechnology. Translation of the specifically used template chemistry from solution to surfaces, with the final aim of achieving highly selective high-throughput systems, has been difficult to reach and poorly explored. Here, we show the first example of a visible light-triggered templated ligation on a surface, employing furan-modified peptide nucleic acids (PNAs). Tailored photo-oxidation of the pro-reactive furan moiety is ensured by the simultaneous introduction of a weak photosensitizer as well as a nucleophilic moiety in the reacting PNA strand. This allows a localized production of singlet oxygen for furan activation, which is not affected by probe dilution or reducing conditions. White light irradiation in combination with recognition of a short 22mer oligo sequence that functions as a template, allows sensitive detection of nucleic acid targets in a 96 well plate format.

2020 ◽  
Author(s):  
Alex Manicardi ◽  
Enrico Cadoni ◽  
Annemieke Madder

Oligonucleotide-templated reactions are frequently exploited for target detection in biosensors and for the construction of DNA-based materials and probes in nanotechnology. Translation of the specifically used template chemistry from solution to surfaces, with the final aim of achieving highly selective high-throughput systems, has been difficult to reach and poorly explored. Here, we show the first example of a visible light-triggered templated ligation on a surface, employing furan-modified peptide nucleic acids (PNAs). Tailored photo-oxidation of the pro-reactive furan moiety is ensured by the simultaneous introduction of a weak photosensitizer as well as a nucleophilic moiety in the reacting PNA strand. This allows a localized production of singlet oxygen for furan activation, which is not affected by probe dilution or reducing conditions. White light irradiation in combination with recognition of a short 22mer oligo sequence that functions as a template, allows sensitive detection of nucleic acid targets in a 96 well plate format.


2015 ◽  
Vol 14 (3) ◽  
pp. 597-602 ◽  
Author(s):  
Elim Albiter ◽  
Salvador Alfaro ◽  
Miguel A. Valenzuela

The photo-oxidation of DMA could be carried out in 3 steps: the first step is the photosensitized production of 1O2 near the surface of the composite; the second step is the diffusion of 1O2 from the surroundings of the surface to the solvent and the third step is the homogeneous reaction between 1O2 and DMA.


1984 ◽  
Vol 39 (10) ◽  
pp. 1433-1441 ◽  
Author(s):  
Nicolaas J. de Mol ◽  
Johannes Reisch ◽  
Gerardus M. J. Beijersbergen van Henegouwen

The role of singlet oxygen (1O2) in the photo-oxidation of the furocoumarin im peratorine was investigated in vitro. Irradiation with visible light and sensitization with methylene blue yielded the imperatorine oxidation product isogosferol and the corresponding ketone as main products. The involvement of 1O2 was dem onstrated by studying the rate of oxidation under conditions that affect the lifetime of 1O2. Com pared to a range of other furocoumarins, im peratorine appeared to be moderately active as a 1O2 generator. The extent of 1O2 production correlated with the skin sensitizing activity. Upon irradiation of im peratorine itself with UVA light (360 nm) no isogosferol formation is observed, probably as a consequence of its photochemical instability. Irradiation with visible light (λ > 400 nm) of a chlorophyll chromophore containing sensitizer in the presence of imperatorine, yielded isogosferol and the corresponding ketone product. This dem onstrates that in the formation of 1O2 oxidation products of imperatorine in plants naturally occuring sensitizers e.g. chlorophyll and visible light are involved, rather than 1O2 produced by im peratorine or other furocoumarins and UVA light. The protective effect on the chlorophyll sensitized im peratorine oxidation by the 1O2- and chlorophyll triplet quencher β-carotene was demonstrated in a lipophilic solvent.


Author(s):  
Anu Janaagal ◽  
Vijayalakshmi Pandey ◽  
Sudhir Sabharwal ◽  
Iti Gupta

The A3B and A2B2 type porphyrins having [Formula: see text]-butylcarbazole and [Formula: see text]-cyanophenyl groups are synthesized and characterized. Their palladium complexes have also been prepared and utilized as catalysts for the photo-oxidation reactions of aromatic aldehydes in good yields. Pd(II)porphyrins displayed decent phosphorescence at [Formula: see text]670 nm and were able to generate singlet oxygen upon light irradiation. The calculated singlet oxygen quantum yields for Pd(II)porphyrins were between 57% and 73%. The photo-catalytic application of Pd(II)porphyrins for aerobic oxidation of aromatic aldehydes is demonstrated.


2020 ◽  
Vol 11 (43) ◽  
pp. 11729-11739 ◽  
Author(s):  
Alex Manicardi ◽  
Enrico Cadoni ◽  
Annemieke Madder

Pinpoint production of singlet oxygen was exploited for a self-contained light-triggered activation of a pro-reactive furan moiety, allowing selective and templated surface modification by recognition of short 22mer oligonucleotides.


2021 ◽  
Vol 23 (1) ◽  
pp. 219-228
Author(s):  
Nabanita Saikia ◽  
Mohamed Taha ◽  
Ravindra Pandey

The rational design of self-assembled nanobio-molecular hybrids of peptide nucleic acids with single-wall nanotubes rely on understanding how biomolecules recognize and mediate intermolecular interactions with the nanomaterial's surface.


2020 ◽  
Author(s):  
busenur Aslanoglu ◽  
Ilya Yakavets ◽  
Vladimir Zorin ◽  
Henri-Pierre Lassalle ◽  
Francesca Ingrosso ◽  
...  

Computational tools have been used to study the photophysical and photochemical features of photosensitizers in photodynamic therapy (PDT) –a minimally invasive, less aggressive alternative for cancer treatment. PDT is mainly based by the activation of molecular oxygen through the action of a photoexcited sensitizer (photosensitizer). Temoporfin, widely known as mTHPC, is a second-generation photosensitizer, which produces the cytotoxic singlet oxygen when irradiated with visible light and hence destroys tumor cells. However, the bioavailability of the mostly hydrophobic photosensitizer, and hence its incorporation into the cells, is fundamental to achieve the desired effect on malignant tissues by PDT. In this study, we focus on the optical properties of the temoporfin chromophore in different environments –in <i>vacuo</i>, in solution, encapsulated in drug delivery agents, namely cyclodextrin, and interacting with a lipid bilayer.


2020 ◽  
Vol 01 ◽  
Author(s):  
Diana Sannino ◽  
Vincenzo Vaiano ◽  
Olga Sacco ◽  
Nicola Morante ◽  
Luca De Guglielmo ◽  
...  

Aims: The aim of this work was to investigate the impact of light modulation parameters on the degradation of terephtalic acid, an organic model pollutant, within a heterogeneous photocatalytic system under visible light. For this purpose, a fixed bed photocatalytic reactor, irradiated by white-light LEDs matrix controlled by a system for light dimming, was used. The bed consisted of a nitrogen-doped titania photocatalyst deposited on polystyrene pellets. Background: Wastewater containing TPA can be treated into conventional aerobic biological units. However, the mineralization of TPA is slow and inefficient and its presence influences negatively the biodegradation efficiency because this pollutant inhibits microbial growth. Nowadays innovative technologies named advanced oxidation processes (AOPs), such as heterogeneous photocatalysis with UV and visible light, ozonation, Fenton oxidation have gained popularity for effective organic destruction of TPA from wastewater. The heterogeneous photocatalytic oxidation process of the TPA under visible light is the most advantageous process in terms of both fixed and operating costs. Objective: In this work the successful application of light modulation techniques to degradation of TPA using a photocatalytic system with supported visible active photocatalysts (N-doped TiO2) immobilized on polystyrene pellets was reported. In particular, sinusoidal lighting has been used analyzing the influence of the period of oscillation and the amplitude of the light modulation on the reaction kinetics, in such a way as to minimize the times and energy costs for the process. Methods: To evaluate the influence of light modulation on the efficiency of the TPA removal, a discontinuous system composed by a Recirculating Photocatalytic Fixed Bed Reactor (RPFBR) irradiated by a matrix of white light LEDs was used. The flat geometry of photoreactor guarantees the efficient excitation of photocatalyst. An amount of 250 mL of aqueous solution with initial TPA concentration of 12.5 ppm was applied in the photocatalytic tests lasting 180 min of irradiation fixed or sinusoidal modulated. Results: The results show that the variation of the oscillation period of the sinusoidal modulation has a relevant influence on the photodegradation of TPA and a maximum value of the apparent kinetic constant, 0.0045 min-1 is found when the period of oscillation is 0.24 s. The sinusoidal modulation with optimal amplitude is that with current between 50-200 mA, that shows the highest value of the apparent kinetic constant, equal to 0.0046 min-1. The optimal sinusoidal modulation, as a consequence is with current between 50-200 mA and period of 0.24 s. From the data collected from the tests, it is possible to evaluate the energy cost necessary to obtain the reduction of 90% of the terephthalic acid in 1 m3 of polluted water for each modulation (E E/O ), and compare these values with other tests for TPA degradation reported in the literature. The internal comparison and with the three systems of literature showed the optima sinusoidal modulation of LEDs matrix permits a strong reduction the electrical energy consumption. Conclusion: Photocatalytic tests have demonstrated the improvement of the process energy efficiency using the light modulation technique . A further confirmation of the advantage of light modulation was obtained by comparing the energy costs required for the abatement of 90% of the terephthalic acid in 1m 3 of the photocatalytic system. Finally, a mathematical model for photocatalytic degradation of terephthalic acid within the recirculating fixed bed photocatalytic reactor, irradiated by white-light LEDs was developed.


Viruses ◽  
2021 ◽  
Vol 13 (4) ◽  
pp. 615
Author(s):  
Allen Wing-Ho Chu ◽  
Cyril Chik-Yan Yip ◽  
Wan-Mui Chan ◽  
Anthony Chin-Ki Ng ◽  
Dream Lok-Sze Chan ◽  
...  

SARS-CoV-2 RT-PCR with pooled specimens has been implemented during the COVID-19 pandemic as a cost- and manpower-saving strategy for large-scale testing. However, there is a paucity of data on the efficiency of different nucleic acid extraction platforms on pooled specimens. This study compared a novel automated high-throughput liquid-based RNA extraction (LRE) platform (PHASIFYTM) with a widely used magnetic bead-based total nucleic acid extraction (MBTE) platform (NucliSENS® easyMAG®). A total of 60 pools of nasopharyngeal swab and 60 pools of posterior oropharyngeal saliva specimens, each consisting of 1 SARS-CoV-2 positive and 9 SARS-CoV-2 negative specimens, were included for the comparison. Real-time RT-PCR targeting the SARS-CoV-2 RdRp/Hel gene was performed, and GAPDH RT-PCR was used to detect RT-PCR inhibitors. No significant differences were observed in the Ct values and overall RT-PCR positive rates between LRE and MBTE platforms (92.5% (111/120] vs 90% (108/120]), but there was a slightly higher positive rate for LRE (88.3% (53/60]) than MBTE (81.7% (49/60]) among pooled saliva. The automated LRE method is comparable to a standard MBTE method for the detection of SAR-CoV-2 in pooled specimens, providing a suitable alternative automated extraction platform. Furthermore, LRE may be better suited for pooled saliva specimens due to more efficient removal of RT-PCR inhibitors.


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