scholarly journals Comparative Genome and Transcriptome Integration Studies Reveal the Mechanism of Pectoral Muscle Development and Function in Pigeons

2021 ◽  
Vol 12 ◽  
Author(s):  
Haobin Hou ◽  
Xiaoliang Wang ◽  
Changsuo Yang ◽  
Xia Cai ◽  
Wenwei Lv ◽  
...  
Keyword(s):  
Muscle Development ◽  
Genetic Model ◽  
Pectoral Muscle ◽  
Production Performance ◽  
Breast Muscle ◽  
Control Group ◽  
Meat Production ◽  
Sequencing Data ◽  
Athletic Ability ◽  
And Function

Pigeon breed resources provide a genetic model for the study of phenomics. The pectoral muscles play a key role for the meat production performance of the meat pigeon and the athletic ability of the High flyers. Euro-pigeons and Silver King pigeons are commercial varieties that exhibit good meat production performance. In contrast to the domestication direction of meat pigeons, the traditional Chinese ornamental pigeon breed, High flyers, has a small and light body. Here, we investigate the molecular mechanism of the pectoral muscle development and function of pigeons using whole-genome and RNA sequencing data. The selective sweep analysis (FST and log2 (θπ ratio)) revealed 293 and 403 positive selection genes in Euro-pigeons and Silver King, respectively, of which 65 genes were shared. With the Silver King and Euro-pigeon as the control group, the High flyers were selected for 427 and 566 genes respectively. There were 673 differentially expressed genes in the breast muscle transcriptome between the commercial meat pigeons and ornamental pigeons. Pigeon genome selection signal combined with the breast muscle transcriptome revealed that six genes (SLC16A10, S100B, SYNE1, HECW2, CASQ2 and LOC110363470) from commercial varieties of pigeons and five genes (INSC, CALCB, ZBTB21, B2M and LOC110356506) from Chinese traditional ornamental pigeons were positively selected which were involved in pathways related to muscle development and function. This study provides new insights into the selection of different directions and the genetic mechanism related to muscle development in pigeons.

scholarly journals Comparative genome and transcriptome integration studies reveal the mechanism of pectoral muscle development and function in pigeons

2021 ◽  
Author(s):  
Haobin Hou ◽  
Xiaoliang Wang ◽  
Changsuo Yang ◽  
Xia Cai ◽  
Wenwei Lv ◽  
...  
Keyword(s):  
Muscle Development ◽  
Pectoral Muscle ◽  
Production Performance ◽  
Breast Muscle ◽  
Actin Binding ◽  
Control Group ◽  
Meat Production ◽  
Athletic Ability ◽  
And Function ◽  
Selection Signal

Abstract Background: Various morphological breeds of rock pigeons have emerged as a result of human domestication. Pigeon breed resources provide a genetic model for the study of phenomics. The pectoral muscles are play a key role for the meat production performance of the meat pigeon and the athletic ability of the High flyers. Euro-pigeons and Silver King are commercial varieties that exhibit good meat production performance. In contrast to the domestication direction of meat pigeons, the traditional Chinese ornamental pigeon breed, High flyers, has a small and light body. Here, we investigate the molecular mechanism of the pectoral muscle development and function of pigeons using whole-genome and RNA sequencing data Result: The selective sweep analysis (FST and log2 (θπ ratio)) revealed 293 and 403 positive selection genes in Euro-pigeons and Silver King, respectively, of which 65 genes were shared. With the Silver King and Euro-pigeon as the control group, the High flyers were selected for 427 and 566 genes respectively. There were 673 differentially expressed genes in the breast muscle transcriptome between the commercial meat pigeons and ornamental pigeons. Pigeon genome selection signal combined with the breast muscle transcriptome revealed that 6 genes from commercial varieties of pigeons and 5 genes from Chinese traditional ornamental pigeons were positively selected. These genes were involved in pathways related to muscle development and function. Conclusion: Integrated selection signal, transcriptome analysis, and functional annotation identified SYNE1 as a key gene enriched in the actin binding and muscle cell differentiation pathways. Moreover, SYNE1 gene mutations have been associated with human muscular dystrophy. The differential expression of this gene reveals that it has a negative regulatory role in the development and function of pigeon breast muscle.

scholarly journals Chromatin Interaction Responds to Breast Muscle Development and Intramuscular Fat Deposition Between Chinese Indigenous Chicken and Fast-Growing Broiler

2021 ◽  
Vol 9 ◽  
Author(s):  
Weihua Tian ◽  
Zhang Wang ◽  
Dandan Wang ◽  
Yihao Zhi ◽  
Jiajia Dong ◽  
...  
Keyword(s):  
Skeletal Muscle ◽  
Muscle Development ◽  
Intramuscular Fat ◽  
Breast Muscle ◽  
Chromatin Interaction ◽  
Chicken Breast ◽  
Meat Production ◽  
Skeletal Muscle Development ◽  
Significant Difference ◽  
Imf Content

Skeletal muscle development and intramuscular fat (IMF) content, which positively contribute to meat production and quality, are regulated by precisely orchestrated processes. However, changes in three-dimensional chromatin structure and interaction, a newly emerged mediator of gene expression, during the skeletal muscle development and IMF deposition have remained unclear. In the present study, we analyzed the differences in muscle development and IMF content between one-day-old commercial Arbor Acres broiler (AA) and Chinese indigenous Lushi blue-shelled-egg chicken (LS) and performed Hi-C analysis on their breast muscles. Our results indicated that significantly higher IMF content, however remarkably lower muscle fiber diameter was detected in breast muscle of LS chicken compared to that of AA broiler. The chromatin intra-interaction was prior to inter-interaction in both AA and LS chicken, and chromatin inter-interaction was heavily focused on the small and gene-rich chromosomes. For genomic compartmentalization, no significant difference in the number of B type compartments was found, but AA had more A type compartments versus LS. The A/B compartment switching of AA versus LS showed more A to B switching than B to A switching. There were no significant differences in the average sizes and distributions of topologically associating domains (TAD). Additionally, approximately 50% of TAD boundaries were overlapping. The reforming and disappearing events of TAD boundaries were identified between AA and LS chicken breast muscles. Among these, the HMGCR gene was located in the TAD-boundary regions in AA broilers, but in TAD-interior regions in LS chickens, and the IGF2BP3 gene was located in the AA-unique TAD boundaries. Both HMGCR and IGF2BP3 genes exhibited increased mRNA expression in one-day-old AA broiler breast muscles. It was demonstrated that the IGF2BP3 and HMGCR genes regulated by TAD boundary sliding were potential biomarkers for chicken breast muscle development and IMF deposition. Our data not only provide a valuable understanding of higher-order chromatin dynamics during muscle development and lipid accumulation but also reveal new insights into the regulatory mechanisms of muscle development and IMF deposition in chicken.

scholarly journals Transcriptome analysis reveals a molecular understanding of nicotinamide and butyrate sodium on meat quality of broilers under high stocking density

2020 ◽  
Author(s):  
Yuqin Wu ◽  
Youli Wang ◽  
Dafei Yin ◽  
Tahir Mahmood ◽  
Jianmin Yuan
Keyword(s):  
Hyaluronic Acid ◽  
Inflammatory Response ◽  
Meat Quality ◽  
Mitochondrial Function ◽  
Muscle Development ◽  
Stocking Density ◽  
Breast Muscle ◽  
Control Group ◽  
Density Control

Abstract Background In recent years, increased attention has been focused on breast muscle yield and meat quality in poultry production. Supplementation with nicotinamide and butyrate sodium can improve the meat quality of broilers. However, the potential molecular mechanism is not clear yet. This study was designed to investigate the effects of supplementation with a combination of nicotinamide and butyrate sodium on breast muscle transcriptome of broilers under high stocking density. A total of 300 21-d-old Cobb broilers were randomly allocated into 3 groups based on stocking density: low stocking density control group (L; 14 birds/m 2 ), high stocking density control group (H; 18 birds/m 2 ), and high stocking density group provided with a combination of 50 mg/kg nicotinamide and 500 mg/kg butyrate sodium (COMB; 18 birds/m 2 ), raised to 42 days of age. Results The H group significantly increased cooking losses, pH decline and activity of lactate dehydrogenase in breast muscle when compared with the L group. COMB showed a significant decrease in these indices by comparison with the H group ( P < 0.05). The transcriptome results showed that key genes involved in glycolysis, proteolysis and immune stress were up-regulated whereas those relating to muscle development, cell adhesion, cell matrix and collagen were down-regulated in the H group as compared to the L group. In contrast, genes related to muscle development, hyaluronic acid, mitochondrial function, and redox pathways were up-regulated while those associated with inflammatory response, acid metabolism, lipid metabolism, and glycolysis pathway were down-regulated in the COMB group when compared with the H group. Conclusions The combination of nicotinamide and butyrate sodium may improve muscle quality by enhancing mitochondrial function and antioxidant capacity, inhibiting inflammatory response and glycolysis, and promoting muscle development and hyaluronic acid synthesis.

scholarly journals Effect of antioxidant and adsorbent on broiler meat production and consumer qualities

2021 ◽  
Vol 262 ◽  
pp. 02013
Author(s):  
Irina Ktsoeva ◽  
Rustam Abdulkhalikov ◽  
Rustem Temiraev ◽  
Svetlana Savkhalova
Keyword(s):  
Dry Matter ◽  
Nutritional Value ◽  
Pectoral Muscle ◽  
Feed Additives ◽  
Poultry Meat ◽  
Control Group ◽  
Meat Production ◽  
Broiler Meat ◽  
Group Iii ◽  
Experimental Group

To reduce the risk of aflatoxicosis, antioxidants have proven to be effective feed additives in combination with adsorbents as excellent inhibitors of intoxication processes in the poultry body. The study purpose was to determine the effect of Tox-O adsorbent in combination with Oxy-Nil antioxidant drug on the broiler meat production and quality and reduce the risk of aflatoxicosis. It was demonstrated that to optimize meat production in the diets of farmed poultry with a tolerant amount of B1 aflatoxin, it is necessary to introduce Oxy-Nil antioxidant in the amount of 600 g/t and Tox-O adsorbent in the amount of 750 g/t of feed. Due to synergistic effect of these drugs, the nutritional value of poultry meat was optimized, which was expressed in control group comparison in the enrichment of pectoral muscle samples with dry matter and protein. When feeding tested drugs in pectoral muscle samples of chickens of experimental group III, the value of meat biological usefulness was improved.

scholarly journals Transcriptome analysis reveals a molecular understanding of nicotinamide and butyrate sodium on meat quality of broilers under high stocking density

2020 ◽  
Author(s):  
Yuqin Wu ◽  
Youli Wang ◽  
Dafei Yin ◽  
Tahir Mahmood ◽  
Jianmin Yuan
Keyword(s):  
Hyaluronic Acid ◽  
Inflammatory Response ◽  
Meat Quality ◽  
Mitochondrial Function ◽  
Muscle Development ◽  
Stocking Density ◽  
Breast Muscle ◽  
Control Group ◽  
Density Control

Abstract Background: In recent years, increased attention has been focused on breast muscle yield and meat quality in poultry production. Supplementation with nicotinamide and butyrate sodium can improve the meat quality of broilers. However, the potential molecular mechanism is not clear yet. This study was designed to investigate the effects of supplementation with a combination of nicotinamide and butyrate sodium on breast muscle transcriptome of broilers under high stocking density. A total of 300 21-d-old Cobb broilers were randomly allocated into 3 groups based on stocking density: low stocking density control group (L; 14 birds/m2), high stocking density control group (H; 18 birds/m2), and high stocking density group provided with a combination of 50 mg/kg nicotinamide and 500 mg/kg butyrate sodium (COMB; 18 birds/m2), raised to 42 days of age. Results: The H group significantly increased cooking losses, pH decline and activity of lactate dehydrogenase in breast muscle when compared with the L group. COMB showed a significant decrease in these indices by comparison with the H group (P < 0.05). The transcriptome results showed that key genes involved in glycolysis, proteolysis and immune stress were up-regulated whereas those relating to muscle development, cell adhesion, cell matrix and collagen were down-regulated in the H group as compared to the L group. In contrast, genes related to muscle development, hyaluronic acid, mitochondrial function, and redox pathways were up-regulated while those associated with inflammatory response, acid metabolism, lipid metabolism, and glycolysis pathway were down-regulated in the COMB group when compared with the H group. Conclusions: The combination of nicotinamide and butyrate sodium may improve muscle quality by enhancing mitochondrial function and antioxidant capacity, inhibiting inflammatory response and glycolysis, and promoting muscle development and hyaluronic acid synthesis.

scholarly journals Promising Role of Growth Hormone-Boosting Peptide in Regulating the Expression of Muscle-Specific Genes and Related MicroRNAs in Broiler Chickens

Animals ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 1906
Author(s):  
Doaa Ibrahim ◽  
Hanan S. Al-Khalaifah ◽  
Ahmed Abdelfattah-Hassan ◽  
Haitham Eldoumani ◽  
Safaa I. Khater ◽  
...  
Keyword(s):  
Skeletal Muscle ◽  
Growth Hormone ◽  
Muscle Development ◽  
Expression Profiles ◽  
Control Group ◽  
Meat Production ◽  
Broiler Chicks ◽  
Skeletal Muscle Development ◽  
Feed Conversion ◽  
D 20

Appropriate skeletal muscle development in poultry is positively related to increasing its meat production. Synthetic peptides with growth hormone-boosting properties can intensify the effects of endogenous growth hormones. However, their effects on the mRNA and miRNA expression profiles that control muscle development post-hatching in broiler chicks is unclear. Thus, we evaluated the possible effects of synthetic growth hormone-boosting peptide (GHBP) inclusion on a chicken’s growth rate, skeletal muscle development-related genes and myomiRs, serum biochemical parameters, and myofiber characteristics. A total of 400 one-day-old broiler chicks were divided into four groups supplied with GHBP at the levels of 0, 100, 200 and 300 μg/kg for 7 days post-hatching. The results showed that the highest levels of serum IGF-1 and GH at d 20 and d 38 post-hatching were found in the 200 μg/kg GHBP group. Targeted gene expression analysis in skeletal muscle revealed that the GHBP effect was more prominent at d 20 post-hatching. The maximum muscle development in the 200 μg/kg GHBP group was fostered by the upregulation of IGF-1, mTOR, myoD, and myogenin and the downregulation of myostatin and the Pax-3 and -7 genes compared to the control group. In parallel, muscle-specific myomiR analysis described upregulation of miR-27b and miR-499 and down-regulation of miR-1a, miR-133a, miR-133b, and miR-206 in both the 200 and 300 μg/kg GHBP groups. This was reflected in the weight gain of birds, which was increased by 17.3 and 11.2% in the 200 and 300 μg/kg GHBP groups, respectively, when compared with the control group. Moreover, the maximum improvement in the feed conversion ratio was achieved in the 200 μg/kg GHBP group. The myogenic effects of GHBP were also confirmed via studying myofiber characteristics, wherein the largest myofiber sizes and areas were achieved in the 200 μg/kg GHBP group. Overall, our findings indicated that administration of 200 μg/kg GHBP for broiler chicks could accelerate their muscle development by positively regulating muscle-specific mRNA and myomiR expression and reinforcing myofiber growth.

scholarly journals Identification and characterization of circRNA during muscle development in different breeds of cattle

2020 ◽  
Author(s):  
Ruili Liu ◽  
Xianxun Liu ◽  
Xuejin Bai ◽  
Chaozhu Xiao ◽  
Yajuan Dong
Keyword(s):  
Meat Quality ◽  
Muscle Development ◽  
Muscle Growth ◽  
Production Performance ◽  
Meat Production ◽  
Quality Improvements ◽  
Muscle Tissues ◽  
New Ideas ◽  
Solid Foundation ◽  
Cattle Meat

Abstract Background Black cattle are a new breed of cattle that are developed by applying modern biotechnology, such as somatic cloning, and conventional breeding methods to Luxi cattle. It is very important to study the function and regulatory mechanism of circRNAs in muscle differentiation among different breeds to improve meat quality and meat production performance and to provide new ideas for beef cattle meat quality improvements and new breed development. Therefore, the goal of this study was to sequence and identify circRNAs in muscle tissues of different breeds of cattle. We used RNA-seq to identify circRNAs in the muscles of two breeds of black cattle (Black and Luxi). Results We identified 14640 circRNAs and found 655 differentially expressed circRNAs. We also analysed the classification and characteristics of circRNAs in muscle tissue. GO and KEGG analyses were used on the parental genes of circRNAs. They were mainly involved in a variety of biological processes, such as muscle fibre development, smooth muscle cell proliferation, bone system morphogenesis, tight junctions and the MAPK, AMPK and mTOR signalling pathways. In addition, we used miRanda to predict the interactions between 15 circRNAs and 12 miRNAs. Based on the above assays, we identified circRNAs (circ0001048, circ0001103, circ0001159, circ0003719, circ0003794, circ0003721, circ0003720, circ0001519, circ0001530, circ0005060, circ0006589, circ0000181, circ0000190, circ0010558, circ0010577) that may play an important role in the regulation of muscle growth and development. Conclusion Our results provide more information about circRNAs regulating muscle development in different breeds of cattle and lay a solid foundation for future experiments.

scholarly journals Identification and Characterization of circRNA in Longissimus Dorsi of Different Breeds of Cattle

2020 ◽  
Vol 11 ◽  
Author(s):  
Ruili Liu ◽  
Xianxun Liu ◽  
Xuejin Bai ◽  
Chaozhu Xiao ◽  
Yajuan Dong
Keyword(s):  
Meat Quality ◽  
Muscle Development ◽  
Muscle Growth ◽  
Production Performance ◽  
Luciferase Reporter ◽  
Meat Production ◽  
Quality Improvements ◽  
Luciferase Reporter Gene ◽  
Real Time Quantitative Pcr ◽  
Cattle Meat

Shandong black cattle is a new breed of cattle that is developed by applying modern biotechnology, such as somatic cloning, and conventional breeding methods to Luxi cattle. It is very important to study the function and regulatory mechanism of circRNAs in muscle differentiation among different breeds to improve meat quality and meat production performance and to provide new ideas for beef cattle meat quality improvements and new breed development. Therefore, the goal of this study was to sequence and identify circRNAs in muscle tissues of different breeds of cattle. We used RNA-seq to identify circRNAs in the muscles of two breeds of cattle (Shandong black and Luxi). We identified 14,640 circRNAs and found 655 differentially expressed circRNAs. We also analyzed the classification and characteristics of circRNAs in muscle tissue. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses were used on the parental genes of circRNAs. They were mainly involved in a variety of biological processes, such as muscle fiber development, smooth muscle cell proliferation, bone system morphogenesis, tight junctions and the MAPK, AMPK, and mTOR signaling pathways. In addition, we used miRanda to predict the interactions between 14 circRNAs and 11 miRNAs. Based on the above assays, we identified circRNAs (circ0001048, circ0001103, circ0001159, circ0003719, circ0003424, circ0003721, circ0003720, circ0001519, circ0001530, circ0005011, circ0014518, circ0000181, circ0000190, circ0010558) that may play important roles in the regulation of muscle growth and development. Using real-time quantitative PCR, 14 circRNAs were randomly selected to verify the real circRNAs. Luciferase reporter gene system was used to verify the binding site of miR-1 in circ0014518. Our results provide more information about circRNAs regulating muscle development in different breeds of cattle and lay a solid foundation for future experiments.

Changes in the hepatic and renal structure and function after a growth promoter boldenone injection in rabbits

2012 ◽  
Vol 62 (2) ◽  
pp. 171-180 ◽  
Author(s):  
Mostafa El-Moghazy ◽  
Ehab Tousson ◽  
Mohamed I. Sakeran
Keyword(s):  
Intramuscular Injection ◽  
Renal Diseases ◽  
Control Group ◽  
Meat Production ◽  
Growth Promoter ◽  
Liver And Kidney ◽  
Serum Glutamate Pyruvate Transaminase ◽  
Glutamate Pyruvate ◽  
And Function ◽  
Serum Glutamate

Boldenone is an androgenic steroid that improves the growth and food conversion in food producing animals. In most countries worldwide, this anabolic steroid is forbidden for meat production. Recently, it is used by bodybuilders in both off-season and pre-contest, where it is well known for increasing vascularity while preparing for a bodybuilding contest. Therefore, our study was designed to investigate the possible effect of using growth promoter boldenone undecylenate on the rabbit liver and kidney structure and functions. Thirty-two adult New Zealand rabbits were divided into four groups. Control group includes animals that injected intramuscularly with olive oil and dissected after 3 weeks. Three experimental groups include animals that receive one, two and three intramuscular injections of 5 mg/kg body weight boldenone, respectively and dissected after 3, 6 and 9 weeks respectively, where the interval of each dose of boldenone was three weeks. Intramuscular injection of rabbits with boldenone increased the serum glutamate oxaloacetate transaminase (SGOT), serum glutamate pyruvate transaminase (SGPT), urea and creatinine compared with the control group. We also found significant increases in the total protein, total lipid, nitric oxide (NO), superoxide dismutase activity (SOD), glutathione (GSH) and malondialdehyde (MDA) in liver and kidney tissues compared with the control group. Intramuscular injection of rabbits with boldenone exhibited mild to severe histopathological lesions in liver tissue as hepatocellular vacuolation in the centrilobular region and sinusoids and in the kidney, the renal glomerulei had completely lost their typical shape with the appearance of some vacuoles of different shapes and sizes with markedly congested sinusoidal and dilated blood vessels. These findings suggest that misuse of growth promoter boldenone undecylenate may contribute to continuous damage of the hepatic and renal function and structure that may lead to a progressive hepatic and renal diseases, so people should be careful if they want to use such steroids to enhance their strength and endurance.

scholarly journals Parenteral administration of vitamins A, D and E on the oxidative metabolism and function of polymorphonuclear leukocytes in swine

2012 ◽  
Vol 32 (8) ◽  
pp. 727-734 ◽  
Author(s):  
Alessandra S. Lima ◽  
Rebeca A. Weigel ◽  
Aline A. Morgado ◽  
Giovanna R. Nunes ◽  
Fernando N. Souza ◽  
...  
Keyword(s):  
Weight Gain ◽  
Oxidative Metabolism ◽  
Polymorphonuclear Leukocytes ◽  
Serum Cortisol ◽  
Treated Group ◽  
Production Performance ◽  
Parenteral Administration ◽  
Control Group ◽  
Treatment Groups ◽  
And Function

The weaning period of piglets is characterized by physiological alterations, such as decreased weight gain, increased reactive oxygen species (ROS) and increased serum cortisol levels with possible effects on the immune response. The effect of parenteral administration of vitamins A, D and E on production performance, oxidative metabolism, and the function of polymorphonuclear leukocytes (PMNLs) was assessed in piglets during the weaning period. The sample was comprised of 20 male piglets that were given an injectable ADE vitamin combination (135,000 IU vitamin A, 40,000 IU vitamin D and 40mg vitamin E/ animal) at 20 and 40 days of age. Weight gain, concentration of reduced glutathione (GSH), malondialdehyde (MDA), superoxide dismutase (SOD) and the microbicidal and phagocytic activity of PMNLs were assessed. No difference was observed in the average piglet weight during the study; however, a greater percentage of weight gain was observed after weaning in the treated group. The concentrations of GSH and SOD did not differ between groups, although lipid peroxidation was greater in the control group at 60 days of age. The investigated variables of oxidative metabolism were correlated as follows: -0.41 for GSH and MDA, -0.54 for GSH and SOD and 0.34 for MDA and SOD. The intensity of intracellular ROS production, the percentage of ROS-producing PMNLs and the intensity of phagocytosis by PMNLs did not differ between treatment groups. Administration of the injectable ADE combination improved the percentage of weight gain between 20 and 40 days of age, decreased oxidative stress at 60 days of age and did not influence the function of PMNLs in piglets.

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