scholarly journals Morphological Evolution: Bioinspired Methods for Analyzing Bioinspired Robots

2022 ◽  
Vol 8 ◽  
Author(s):  
Eric Aaron ◽  
Joshua Hawthorne-Madell ◽  
Ken Livingston ◽  
John H. Long
Keyword(s):  
Evolutionary Biology ◽  
Morphological Traits ◽  
Evolutionary Dynamics ◽  
Morphological Evolution ◽  
Analytical Techniques ◽  
Genetic Mutation ◽  
Evolutionary Mechanisms ◽  
Selection Gradient ◽  
Common Interests ◽  
Analytical Approaches

To fully understand the evolution of complex morphologies, analyses cannot stop at selection: It is essential to investigate the roles and interactions of multiple processes that drive evolutionary outcomes. The challenges of undertaking such analyses have affected both evolutionary biologists and evolutionary roboticists, with their common interests in complex morphologies. In this paper, we present analytical techniques from evolutionary biology, selection gradient analysis and morphospace walks, and we demonstrate their applicability to robot morphologies in analyses of three evolutionary mechanisms: randomness (genetic mutation), development (an explicitly implemented genotype-to-phenotype map), and selection. In particular, we applied these analytical techniques to evolved populations of simulated biorobots—embodied robots designed specifically as models of biological systems, for the testing of biological hypotheses—and we present a variety of results, including analyses that do all of the following: illuminate different evolutionary dynamics for different classes of morphological traits; illustrate how the traits targeted by selection can vary based on the likelihood of random genetic mutation; demonstrate that selection on two selected sets of morphological traits only partially explains the variance in fitness in our biorobots; and suggest that biases in developmental processes could partially explain evolutionary dynamics of morphology. When combined, the complementary analytical approaches discussed in this paper can enable insight into evolutionary processes beyond selection and thereby deepen our understanding of the evolution of robotic morphologies.

scholarly journals Evolution of correlated complexity in the radically different courtship signals of birds-of-paradise

2018 ◽  
Author(s):  
Russell A. Ligon ◽  
Christopher D. Diaz ◽  
Janelle L. Morano ◽  
Jolyon Troscianko ◽  
Martin Stevens ◽  
...  
Keyword(s):  
Sexual Selection ◽  
Natural Selection ◽  
Evolutionary Biology ◽  
Evolutionary Dynamics ◽  
Functional Integration ◽  
Empirical Support ◽  
Evolutionary Patterns ◽  
Evolutionary Innovation ◽  
Birds Of Paradise ◽  
Analytical Approaches

Ornaments used in courtship often vary wildly among species, reflecting the evolutionary interplay between mate preference functions and the constraints imposed by natural selection. Consequently, understanding the evolutionary dynamics responsible for ornament diversification has been a longstanding challenge in evolutionary biology. However, comparing radically different ornaments across species, as well as different classes of ornaments within species, is a profound challenge to understanding diversification of sexual signals. Using novel methods and a unique natural history dataset, we explore evolutionary patterns of ornament evolution in a group - the birds-of-paradise - exhibiting dramatic phenotypic diversification widely assumed to be driven by sexual selection. Rather than the tradeoff between ornament types originally envisioned by Darwin and Wallace, we found positive correlations among cross-modal (visual/acoustic) signals indicating functional integration of ornamental traits into a composite unit - the courtship phenotype. Furthermore, given the broad theoretical and empirical support for the idea that systemic robustness - functional overlap and interdependency - promotes evolutionary innovation, we posit that birds-of-paradise have radiated extensively through ornamental phenotype space as a consequence of the robustness in the courtship phenotype that we document at a phylogenetic scale. We suggest that the degree of robustness in courtship phenotypes among taxa can provide new insights into the relative influence of sexual and natural selection on phenotypic radiations.Author SummaryAnimals frequently vary widely in ornamentation, even among closely related species. Understanding the patterns that underlie this variation is a significant challenge, requiring comparisons among drastically different traits - like comparing apples to oranges. Here, we use novel analytical approaches to quantify variation in ornamental diversity and richness across the wildly divergent birds-of-paradise, a textbook example of how sexual selection can profoundly shape organismal phenotypes. We find that color and acoustic complexity, along with behavior and acoustic complexity, are positively correlated across evolutionary time-scales. Positive covariation among ornament classes suggests that selection is acting on correlated suites of traits - a composite courtship phenotype - and that this integration may be partially responsible for the extreme variation we see in birds-of-paradise.

scholarly journals Balancing selection and drift in a polymorphic salamander metapopulation

2021 ◽  
Vol 17 (4) ◽  
Author(s):  
Sean T. Giery ◽  
Marketa Zimova ◽  
Dana L. Drake ◽  
Mark C. Urban
Keyword(s):  
Evolutionary Biology ◽  
Evolutionary Dynamics ◽  
Balancing Selection ◽  
Ambystoma Maculatum ◽  
Frequency Variation ◽  
Egg Mass ◽  
Contemporary Evolution ◽  
Evolutionary Mechanisms ◽  
Large Populations ◽  
Morph Frequency

Understanding how genetic variation is maintained in a metapopulation is a longstanding problem in evolutionary biology. Historical resurveys of polymorphisms have offered efficient insights about evolutionary mechanisms, but are often conducted on single, large populations, neglecting the more comprehensive view afforded by considering all populations in a metapopulation. Here, we resurveyed a metapopulation of spotted salamanders ( Ambystoma maculatum ) to understand the evolutionary drivers of frequency variation in an egg mass colour polymorphism. We found that this metapopulation was demographically, phenotypically and environmentally stable over the last three decades. However, further analysis revealed evidence for two modes of evolution in this metapopulation—genetic drift and balancing selection. Although we cannot identify the balancing mechanism from these data, our findings present a clear view of contemporary evolution in colour morph frequency and demonstrate the importance of metapopulation-scale studies for capturing a broad range of evolutionary dynamics.

scholarly journals New Avenues for Old Travellers: Phenotypic Evolutionary Trends Meet Morphodynamics, and Both Enter the Global Change Biology Era

2021 ◽  
Author(s):  
Davide Tamagnini ◽  
Daniele Canestrelli ◽  
Carlo Meloro ◽  
Pasquale Raia ◽  
Luigi Maiorano
Keyword(s):  
Global Change ◽  
Evolutionary Biology ◽  
Evolutionary Dynamics ◽  
Morphological Evolution ◽  
Parallel Evolution ◽  
Evolutionary Trends ◽  
Evolutionary Pattern ◽  
Directional Evolution ◽  
Definition Of ◽  
The Impact

AbstractEvolutionary trends (ETs) are traditionally defined as substantial changes in the state of traits through time produced by a persistent condition of directional evolution. ETs might also include directional responses to ecological, climatic or biological gradients and represent the primary evolutionary pattern at high taxonomic levels and over long-time scales. The absence of a well-supported operative definition of ETs blurred the definition of conceptual differences between ETs and other key concepts in evolution such as convergence, parallel evolution, and divergence. Also, it prevented the formulation of modern guidelines for studying ETs and evolutionary dynamics related to them. In phenotypic evolution, the theory of morphodynamics states that the interplay between evolutionary factors such as phylogeny, evo-devo constraints, environment, and biological function determines morphological evolution. After introducing a new operative definition, here we provide a morphodynamics-based framework for studying phenotypic ETs, discussing how understanding the impact of these factors on ETs improves the explanation of links between biological patterns and processes underpinning directional evolution. We envisage that adopting a quantitative, pattern-based, and multifactorial approach will pave the way to new potential applications for this field of evolutionary biology. In this framework, by exploiting the catalysing effect of climate change on evolution, research on ETs induced by global change might represent an ideal arena for validating hypotheses about the predictability of evolution.

scholarly journals Eco-evolutionary dynamics in metacommunities: ecological inheritance, helping within- and harming between-species

2017 ◽  
Author(s):  
Charles Mullon ◽  
Laurent Lehmann
Keyword(s):  
Evolutionary Biology ◽  
Mating Systems ◽  
Community Dynamics ◽  
Local Community ◽  
Evolutionary Dynamics ◽  
Demographic Stochasticity ◽  
Selection Gradient ◽  
Predator Prey ◽  
Material Resources ◽  
Ecological Inheritance

AbstractUnderstanding selection on intra- and inter-specific interactions that take place in dispersal-limited communities is a challenge for ecology and evolutionary biology. The problem is that local demographic stochasticity generates eco-evolutionary dynamics that are generally too complicated to make tractable analytical investigations. Here, we circumvent this problem by approximating the selection gradient on a quantitative trait that influences local community dynamics, assuming that such dynamics are deterministic with a stable fixed point. We nonetheless incorporate unavoidable kin selection effects arising from demographic stochasticity. Our approximation reveals that selection depends on how an individual expressing a trait-change influences: (1) its own fitness and the fitness of its current relatives; and (2) the fitness of its downstream relatives through modifications of local ecological conditions (i.e., through ecological inheritance). Mathematically, the effects of ecological inheritance on selection are captured by dispersal-limited versions of press-perturbations of community ecology. We use our approximation to investigate the evolution of helping within- and harming between-species when these behaviours influence demography. We find that individually costly helping evolves more readily when intra-specific competition is for material resources rather than for space because in this case, the costs of kin competition are paid by downstream relatives. Similarly, individually costly harming between species evolves when it alleviates downstream relatives from inter-specific competition. Beyond these examples, our approximation can help better understand the influence of ecological inheritance on a variety of eco-evolutionary dynamics in metacommunities, from consumer-resource and predator-prey coevolution to selection on mating systems with demographic feedbacks.

scholarly journals Is Sexual Conflict a Driver of Speciation? A Case Study With a Tribe of Brush-footed Butterflies

2020 ◽  
Author(s):  
Ana Paula S Carvalho ◽  
Ryan A St Laurent ◽  
Emmanuel F A Toussaint ◽  
Caroline Storer ◽  
Kelly M Dexter ◽  
...  
Keyword(s):  
Sexual Conflict ◽  
Abiotic Factors ◽  
Evolutionary Mechanisms ◽  
Diversification Rates ◽  
Exon Capture ◽  
Key Driver ◽  
Underlying Mechanisms ◽  
Analytical Approaches ◽  
Acting In Concert

Abstract Understanding the evolutionary mechanisms governing the uneven distribution of species richness across the tree of life is a great challenge in biology. Scientists have long argued that sexual conflict is a key driver of speciation. This hypothesis, however, has been highly debated in light of empirical evidence. Recent advances in the study of macroevolution make it possible to test this hypothesis with more data and increased accuracy. In the present study, we use phylogenomics combined with four different diversification rate analytical approaches to test whether sexual conflict is a driver of speciation in brush-footed butterflies of the tribe Acraeini. The presence of a sphragis, an external mating plug found in most species among Acraeini, was used as a proxy for sexual conflict. Diversification analyses statistically rejected the hypothesis that sexual conflict is associated with shifts in diversification rates in Acraeini. This result contrasts with earlier studies and suggests that the underlying mechanisms driving diversification are more complex than previously considered. In the case of butterflies, natural history traits acting in concert with abiotic factors possibly play a stronger role in triggering speciation than does sexual conflict. [Acraeini butterflies; arms race; exon capture phylogenomics; Lepidoptera macroevolution; sexual selection; sphragis.]

Contrasting evolutionary flexibility in sister groups: disparity and diversity in Mesozoic atelostomate echinoids

Paleobiology ◽  
2000 ◽  
Vol 26 (1) ◽  
pp. 56-79 ◽  
Author(s):  
Gunther J. Eble
Keyword(s):  
Morphological Evolution ◽  
Hierarchical Level ◽  
Developmental Constraint ◽  
Evolutionary Mechanisms ◽  
Lower Paleozoic ◽  
Time Period ◽  
Biological Hierarchy ◽  
Substantial Change ◽  
Test Architecture ◽  
Ordinal Level

Temporal asymmetries in clade histories have often been studied in lower Paleozoic radiations. Post-Paleozoic patterns, however, are less well understood. In this paper, disparity and diversity changes in Mesozoic heart urchins were analyzed at the ordinal level, with contrasts among the sister groups Holasteroida and Spatangoida, their paraphyletic stem group Disasteroida the more inclusive clade, the superorder Atelostomata. A 38-dimensional landmark-based morphospace representing test architecture was used to describe morphological evolution in terms of total variance and total range. Discordances between disparity and diversity were evident and were expressed both as deceleration in morphological diversification in all groups and as disproportionately higher disparity early in the histories of the Atelostomata, Holasteroida Spatangoida. The finding that the early atelostomate disparity peak coincides with the origin of the orders Holasteroida and Spatangoida lends support to the perception of orders as semi-independent entities in the biological hierarchy and as meaningful proxies for morphological distinctness.A comparison of holasteroid and spatangoid responses to the end-Cretaceous mass extinction revealed morphological selectivity. Paleocene spatangoid survivors showed no change in disparity relative to the Campanian-Maastrichtian sample, suggesting nonselectivity. Holasteroids suffered a pronounced loss in disparity (despite a rather high Late Cretaceous level of disparity), indicating morphological selectivity of extinction.Partitioning of disparity into plastral and nonplastral components, reflecting different degrees of developmental entrenchment and functionality, suggests that the origin of holasteroids and spatangoids is more consistent with an exploration of the developmental flexibility of nonplastral constructions than with uniform ecospace occupation. Within groups, several patterns were also most consistent with intrinsic controls. For plastral landmarks, there is an apparent increase in developmental modularity and decrease in developmental constraint from disasteroids to holasteroids and spatangoids. For nonplastral landmarks, no substantial change in disparity was observed from disasteroids to holasteroids and spatangoids, suggesting the maintenance of a developmental constraint despite the passage of time and ecological differentiation. More generally, this study suggests that certain topologies of disparity and evolutionary mechanisms potentially characteristic of the lower Paleozoic radiations of higher taxa (e.g., developmental flexibility) need not be confined to any given time period or hierarchical level.

scholarly journals Influenza virus N-linked glycosylation and innate immunity

2019 ◽  
Vol 39 (1) ◽  
Author(s):  
Ian A. York ◽  
James Stevens ◽  
Irina V. Alymova
Keyword(s):  
Immune Responses ◽  
Evolutionary Dynamics ◽  
Analytical Techniques ◽  
Influenza Viruses ◽  
Innate Immune ◽  
Global Public Health ◽  
Innate Immune Responses ◽  
Critical Determinant ◽  
Public Health Challenge ◽  
Seasonal Epidemics

AbstractInfluenza viruses cause seasonal epidemics and sporadic pandemics in humans. The virus’s ability to change its antigenic nature through mutation and recombination, and the difficulty in developing highly effective universal vaccines against it, make it a serious global public health challenge. Influenza virus’s surface glycoproteins, hemagglutinin and neuraminidase, are all modified by the host cell’s N-linked glycosylation pathways. Host innate immune responses are the first line of defense against infection, and glycosylation of these major antigens plays an important role in the generation of host innate responses toward the virus. Here, we review the principal findings in the analytical techniques used to study influenza N-linked glycosylation, the evolutionary dynamics of N-linked glycosylation in seasonal versus pandemic and zoonotic strains, its role in host innate immune responses, and the prospects for lectin-based therapies. As the efficiency of innate immune responses is a critical determinant of disease severity and adaptive immunity, the study of influenza glycobiology is of clinical as well as research interest.

scholarly journals The Cardamine hirsuta genome offers insight into the evolution of morphological diversity

Nature Plants ◽  
2016 ◽  
Vol 2 (11) ◽  
Author(s):  
Xiangchao Gan ◽  
Angela Hay ◽  
Michiel Kwantes ◽  
Georg Haberer ◽  
Asis Hallab ◽  
...  
Keyword(s):  
Evolutionary Biology ◽  
Human Genetics ◽  
Morphological Evolution ◽  
Morphological Diversity ◽  
Close Relative ◽  
Gene Duplications ◽  
Tandem Gene Duplication ◽  
Genome Wide ◽  
Differential Gene

Abstract Finding causal relationships between genotypic and phenotypic variation is a key focus of evolutionary biology, human genetics and plant breeding. To identify genome-wide patterns underlying trait diversity, we assembled a high-quality reference genome of Cardamine hirsuta, a close relative of the model plant Arabidopsis thaliana. We combined comparative genome and transcriptome analyses with the experimental tools available in C. hirsuta to investigate gene function and phenotypic diversification. Our findings highlight the prevalent role of transcription factors and tandem gene duplications in morphological evolution. We identified a specific role for the transcriptional regulators PLETHORA5/7 in shaping leaf diversity and link tandem gene duplication with differential gene expression in the explosive seed pod of C. hirsuta. Our work highlights the value of comparative approaches in genetically tractable species to understand the genetic basis for evolutionary change.

scholarly journals General Analytical Schemes for the Characterization of Pectin-Based Edible Gelled Systems

2012 ◽  
Vol 2012 ◽  
pp. 1-12 ◽  
Author(s):  
Maryam Haghighi ◽  
Karamatollah Rezaei
Keyword(s):  
Image Analysis ◽  
Three Dimensional ◽  
Analytical Techniques ◽  
Physicochemical Analysis ◽  
Visual Observation ◽  
Scientific Data ◽  
Rheological Measurement ◽  
Rheological Measurements ◽  
Analytical Approaches

Pectin-based gelled systems have gained increasing attention for the design of newly developed food products. For this reason, the characterization of such formulas is a necessity in order to present scientific data and to introduce an appropriate finished product to the industry. Various analytical techniques are available for the evaluation of the systems formulated on the basis of pectin and the designed gel. In this paper, general analytical approaches for the characterization of pectin-based gelled systems were categorized into several subsections including physicochemical analysis, visual observation, textural/rheological measurement, microstructural image characterization, and psychorheological evaluation. Three-dimensional trials to assess correlations among microstructure, texture, and taste were also discussed. Practical examples of advanced objective techniques including experimental setups for small and large deformation rheological measurements and microstructural image analysis were presented in more details.

scholarly journals Sulprostone-Induced Gastric Dysrhythmia in the Ferret: Conventional and Advanced Analytical Approaches

2021 ◽  
Vol 11 ◽  
Author(s):  
Zengbing Lu ◽  
Yu Zhou ◽  
Longlong Tu ◽  
Sze Wa Chan ◽  
Man P. Ngan ◽  
...  
Keyword(s):  
Blood Pressure ◽  
Body Temperature ◽  
Core Body Temperature ◽  
Analytical Techniques ◽  
Dominant Frequency ◽  
Fluctuation Analysis ◽  
Prostaglandin E ◽  
Myoelectric Activity ◽  
Core Body ◽  
Analytical Approaches

Nausea and emesis resulting from disease or drug treatment may be associated with disrupted gastric myoelectric activity (GMA). Conventional analytical techniques can determine the relative degrees of brady-, normo-, and tachygastric power, but lose information relative to the basic slow wave shape. The aim of the present study was to investigate the application of advanced analytical techniques in the analysis of disrupted GMA recorded after administration of sulprostone, a prostaglandin E3/1 agonist, in ferrets. Ferrets were implanted with radiotelemetry devices to record GMA, blood pressure, heart rate (HR) and core body temperature 1 week before the administration of sulprostone (30 μg/kg) or vehicle (saline, 0.5 mL/kg). GMA was initially analyzed using fast Fourier transformations (FFTs) and a conventional power partitioning. Detrended fluctuation analysis (DFA) was also applied to the GMA recordings to reveal information relative to the fluctuation of signals around local trends. Sample entropy (SampEn) analysis was used for examining the regularity of signals. Conventional signal processing techniques revealed that sulprostone increased the dominant frequency (DF) of slow waves, with an increase in the percentage power of the tachygastric range and a decrease in the percentage power of the normogastric range. DFA revealed that sulprostone decreased the fluctuation function, indicative of a loss of the variability of GMA fluctuations around local trends. Sulprostone increased SampEn values, indicating a loss of regularity in the GMA data. Behaviorally, sulprostone induced emesis and caused defecation. It also increased blood pressure and elevated HR, with an associated decrease in HR variability (HRV). Further analysis of HRV revealed a decrease in both low-frequency (LF) and high-frequency (HF) components, with an overall increase in the LF/HF ratio. Sulprostone did not affect core body temperature. In conclusion, DFA and SampEn permit a detailed analysis of GMA, which is necessary to understand the action of sulprostone to modulate gastric function. The action to decrease HRV and increase the LF/HF ratio may be consistent with a shift toward sympathetic nervous system dominance, commonly seen during nausea.

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