scholarly journals Seroprevalence and Molecular Epidemiology of Aleutian Disease in Various Countries during 1972–2021: A Review and Meta-Analysis

Animals ◽  
2021 ◽  
Vol 11 (10) ◽  
pp. 2975
Author(s):  
Magdalena Zaleska-Wawro ◽  
Anna Szczerba-Turek ◽  
Wojciech Szweda ◽  
Jan Siemionek
Keyword(s):  
Molecular Epidemiology ◽  
Animal Species ◽  
Meta Analysis ◽  
American Mink ◽  
Geographic Origin ◽  
Natural Populations ◽  
Diagnostic Technique ◽  
Potential Threat ◽  
The World ◽  
Free Ranging

Aleutian disease (AD) poses a serious threat to both free-ranging and farmed mink around the world. The disease is caused by the Aleutian mink disease virus (AMDV), which also poses a health risk for other members of the family Mustelidae, including wild mink, weasels, badgers and other animal species. This article analyses the seroprevalence of AMDV infections in mink and other species around the world, and reviews recent knowledge relating to the molecular epidemiology of the AMDV. Depending on the applied diagnostic technique and the country, the prevalence of anti-AMDV antibodies or AMDV DNA was established at 21.60–100.00% in farmed American mink, 0.00–93.30% in free-ranging American mink and 0.00–25.00% in European mink. Anti-AMDV antibodies or AMDV DNA were also detected in other free-living fur-bearing animals in Europe and Canada, where their prevalence was determined at 0.00–32.00% and 0.00–70.50%, respectively. This may indicate a potential threat to various animal species. AMDV strains are not clustered into genotypes based on the geographic origin, year of isolation or pathogenicity. The isolates that were identified on mink farms around the world originated from North America because American mink were introduced to Europe and Asia for breeding purposes and to restock natural populations.

The global status and genetic characterization of hydatidosis in camels (Camelus dromedarius): a systematic literature review with meta-analysis based on published papers

Parasitology ◽  
2020 ◽  
pp. 1-15
Author(s):  
Davood Anvari ◽  
Nima Pourmalek ◽  
Saeed Rezaei ◽  
Amir Fotovati ◽  
Seyed Abdollah Hosseini ◽  
...  
Keyword(s):  
Hydatid Disease ◽  
English Language ◽  
Control Strategies ◽  
Meta Analysis ◽  
Diagnostic Technique ◽  
Geographic Area ◽  
Pooled Prevalence ◽  
The World ◽  
Global Status ◽  
Epidemiological Characteristics

Abstract Hydatidosis is a potential zoonotic helminthic disease affecting a broad spectrum of mammals, including humans, worldwide. The current review was conducted to investigate the genotypic status and prevalence of hydatid disease in camels across the world. For the purpose of the study, the articles addressing the worldwide prevalence of hydatidosis in camels were searched in several English language databases. The search process resulted in the inclusion of 122 papers. Based on the data presented in the reviewed articles, the pooled prevalence of hydatid disease in camels across the world was measured at 23.75% (95% CI 20.15–27.55). Moreover, the subgroup analysis demonstrated significant differences in the overall prevalence of hydatidosis among camels based on year, geographic area, climate parameters, camel population, gender, infected organ, fertility rate of the cyst and laboratory diagnostic technique. Furthermore, the Echinococcus granulosus genotypes identified in camels with hydatidosis included G1, G2, G3, G1–G3, G5, G6, G7, G6–G7 and G6–G10, with G6 being the most common genotype throughout the world. The data obtained from the current study are central to the better conceptualization of the biological and epidemiological characteristics of E. granulosus s.l. genotypes around the world, which can be helpful in the planning and adoption of more comprehensive control strategies.

scholarly journals Illustrating the importance of meta-analysing variances alongside means in ecology and evolution

2019 ◽  
Author(s):  
Alfredo Sánchez-Tójar ◽  
Nicholas Patrick Moran ◽  
Rose E O'Dea ◽  
Klaus Reinhold ◽  
Shinichi Nakagawa
Keyword(s):  
Analysis Of Variance ◽  
Animal Species ◽  
Meta Analysis ◽  
Biological Processes ◽  
Developmental Stress ◽  
Stress Effects ◽  
Trait Variance ◽  
The World ◽  
Primary Focus

Meta-analysis is increasingly used in biology to both quantitatively summarize available evidence for specific questions, and generate new hypotheses. While this powerful tool has mostly been deployed to study mean effects, there is untapped potential to study effects on (trait) variance. Here, we use a recently published dataset as a case study to demonstrate how meta-analysis of variance can be used to provide insights into biological processes. This dataset included 704 effect sizes from 89 studies, covering 56 animal species, and was originally used to test developmental stress effects on a range of traits. We found that developmental stress not only negatively affects mean trait values, but also increases trait variance, mostly in reproduction, showcasing how meta-analysis of variance can reveal previously overlooked effects. Furthermore, we show how meta-analysis of variance can be used as a tool to help meta-analysts make informed methodological decisions, even when the primary focus is on mean effects. We provide all data and comprehensive R scripts with detailed explanations to make it easier for researchers to conduct this type of analysis. We encourage meta-analysts in all disciplines to move beyond the world of means and start unravelling secrets of the world of variance.

How Molecular Epidemiology Can Affect Tuberculosis Control in the Middle East Countries: A Systematic Review and Meta-Analysis

2020 ◽  
Vol 20 ◽  
Author(s):  
Mohammad Asgharzadeh ◽  
Jalil Rashedi ◽  
Behroz Mahdavi Poor ◽  
Hossein Samadi kafil ◽  
Hossein Moharram Zadeh ◽  
...  
Keyword(s):  
Middle East ◽  
Molecular Epidemiology ◽  
Average Rate ◽  
Meta Analysis ◽  
Close Monitoring ◽  
Drug Resistant ◽  
Middle East Countries ◽  
Virulent Strains ◽  
Recent Transmission ◽  
Highly Virulent

: Nowadays, due to the incidence of specific strains of Mycobacterium tuberculosis and also increase the rate of drug resistant-TB mortality rate has elevated by this disease. Identification of common strains in the region as well as sources of transmission are essential to control the disease that this has been possible by using molecular epidemiology. In this survey, studies which have been carried out based on spoligotyping method in Muslim Middle East countries were considered to determine their role in control of TB. All studies conducted from 2005 to June 2016 were considered systematically in three electronic data bases and finally, 23 studies were selected. The average rate of clustering was 84% and the rate of recent transmission was variable from 21.7% to 92.4%. Incidence of Beijing strains was been rising in the considered countries. In Iran and Saudi Arabia which are immigration and labour-hosting countries, respectively, rapid transmittable strains and drug resistant Beijings were higher than other considered countries. Considering the incidence of highly virulent strains, due to the increase of immigration and people infected with HIV, tuberculosis, especially drug resistant form, the lack of close monitoring in the future will be induce trouble.

scholarly journals Independent evolution towards larger body size in the distinctive Faroe Island mice

2021 ◽  
Author(s):  
Ricardo Wilches ◽  
William H Beluch ◽  
Ellen McConnell ◽  
Diethard Tautz ◽  
Yingguang Frank Chan
Keyword(s):  
Body Size ◽  
Meta Analysis ◽  
Small Body ◽  
Laboratory Mouse ◽  
Large Body ◽  
Natural Populations ◽  
Size Variation ◽  
Phenotypic Traits ◽  
Island Population ◽  
Multiple Loci

Abstract Most phenotypic traits in nature involve the collective action of many genes. Traits that evolve repeatedly are particularly useful for understanding how selection may act on changing trait values. In mice, large body size has evolved repeatedly on islands and under artificial selection in the laboratory. Identifying the loci and genes involved in this process may shed light on the evolution of complex, polygenic traits. Here, we have mapped the genetic basis of body size variation by making a genetic cross between mice from the Faroe Islands, which are among the largest and most distinctive natural populations of mice in the world, and a laboratory mouse strain selected for small body size, SM/J. Using this F2 intercross of 841 animals, we have identified 111 loci controlling various aspects of body size, weight and growth hormone levels. By comparing against other studies, including the use of a joint meta-analysis, we found that the loci involved in the evolution of large size in the Faroese mice were largely independent from those of a different island population or other laboratory strains. We hypothesize that colonization bottleneck, historical hybridization, or the redundancy between multiple loci have resulted in the Faroese mice achieving an outwardly similar phenotype through a distinct evolutionary path.

scholarly journals Deepening of In Silico Evaluation of SARS-CoV-2 Detection RT-qPCR Assays in the Context of New Variants

Genes ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 565
Author(s):  
Mathieu Gand ◽  
Kevin Vanneste ◽  
Isabelle Thomas ◽  
Steven Van Gucht ◽  
Arnaud Capron ◽  
...  
Keyword(s):  
Performance Evaluation ◽  
Severe Acute Respiratory Syndrome ◽  
In Silico ◽  
The Other ◽  
Viral Rna ◽  
Potential Threat ◽  
The World

For 1 year now, the world is undergoing a coronavirus disease-2019 (COVID-19) pandemic due to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The most widely used method for COVID-19 diagnosis is the detection of viral RNA by RT-qPCR with a specific set of primers and probe. It is important to frequently evaluate the performance of these tests and this can be done first by an in silico approach. Previously, we reported some mismatches between the oligonucleotides of publicly available RT-qPCR assays and SARS-CoV-2 genomes collected from GISAID and NCBI, potentially impacting proper detection of the virus. In the present study, 11 primers and probe sets investigated during the first study were evaluated again with 84,305 new SARS-CoV-2 unique genomes collected between June 2020 and January 2021. The lower inclusivity of the China CDC assay targeting the gene N has continued to decrease with new mismatches detected, whereas the other evaluated assays kept their inclusivity above 99%. Additionally, some mutations specific to new SARS-CoV-2 variants of concern were found to be located in oligonucleotide annealing sites. This might impact the strategy to be considered for future SARS-CoV-2 testing. Given the potential threat of the new variants, it is crucial to assess if they can still be correctly targeted by the primers and probes of the RT-qPCR assays. Our study highlights that considering the evolution of the virus and the emergence of new variants, an in silico (re-)evaluation should be performed on a regular basis. Ideally, this should be done for all the RT-qPCR assays employed for SARS-CoV-2 detection, including also commercial tests, although the primer and probe sequences used in these kits are rarely disclosed, which impedes independent performance evaluation.

scholarly journals Porcine Circovirus 3a Field Strains in Free-Living Wild Boars in Paraná State, Brazil

Animals ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 1634
Author(s):  
Tatiana Carolina Gomes Dutra de Souza ◽  
Danielle Gava ◽  
Rejane Schaefer ◽  
Raquel Arruda Leme ◽  
Gisele da Silva Porto ◽  
...  
Keyword(s):  
Animal Species ◽  
Porcine Circovirus ◽  
Whole Genome ◽  
Living Animal ◽  
Pcr Assay ◽  
Serum Samples ◽  
Viral Dna ◽  
Free Living ◽  
Wild Boars ◽  
The World

Porcine circovirus 3 (PCV-3) was identified in domestic pigs worldwide. Although PCV-3 has also been detected in wild boars, information regarding its circulation in this free-living animal species is scarce. To investigate PCV-3 occurrence in free-living wild boars in Brazil, 70 serum samples collected between January 2017 and June 2019 in Paraná state, Brazil were analyzed by PCR assay. Amplicons measuring 330 bp in length were amplified in seven (10.0%) of the serum samples and confirmed to be PCV3-specific by nucleotide (nt) sequencing. As the amplified products from the serum samples yielded only intermediate levels of viral DNA, lung samples from the seven PCR-positive wild boars were also evaluated by PCR. Of these samples, five lung samples were positive and provided high levels of viral DNA. The three lung samples that presented the highest levels of viral DNA were selected for amplification and sequencing of the whole PCV-3 genome. The three full-length sequences obtained were grouped in PCV-3 clade “a”, and the sequences exhibited 100% nucleotide similarity among them. The PCV-3 field strains of this study showed nucleotide and amino acid similarities of 98.5–99.8% and 98.8–100%, respectively, with whole-genome PCV-3 sequences from around the world.

scholarly journals An Understanding of the Global Status of Major Bacterial Pathogens of Milk Concerning Bovine Mastitis: A Systematic Review and Meta-Analysis (Scientometrics)

Pathogens ◽  
2021 ◽  
Vol 10 (5) ◽  
pp. 545
Author(s):  
Paramanandham Krishnamoorthy ◽  
Kuralayanapalya P. Suresh ◽  
Kavitha S. Jayamma ◽  
Bibek R. Shome ◽  
Sharanagouda S. Patil ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Management Practices ◽  
Meta Analysis ◽  
Bacterial Species ◽  
Clinical Mastitis ◽  
Therapeutic Interventions ◽  
Coagulase Negative Staphylococcus ◽  
Prevalence Studies ◽  
The World ◽  
Pathogen Prevalence

In this study, the major mastitis pathogen prevalence in the cattle and buffalo of the world was estimated by a meta-analysis. Staphylococcus (S) species, Streptococcus (St) species, and Escherichia coli (Ec) prevalence studies reported during 1979–2019 were collected using online databases, and offline resources. A meta-analysis of these data was done with the meta package in R-Software. The Staphylococcus aureus was the major mastitis pathogen, mostly causing subclinical mastitis, Ec causing clinical mastitis and St causing subclinical and clinical mastitis. The pooled prevalence estimates of S, St, and Ec were 28%, 12%, and 11% in the world from 156, 129, and 92 studies, respectively. The S, St, and Ec prevalences were high in Latin America (51%), Oceania (25%), and Oceania (28%), respectively. Higher S, St, and Ec prevalences were observed by molecular methods, signifying high sensitivity and usefulness for future studies. Among bacterial species, S. aureus (25%) followed by coagulase-negative Staphylococcus species (20%), Escherichia coli (11%), St. agalactiae (9%), St. uberis (9%) were the important pathogens present in the milk of the world. We hypothesize that there is a urgent need to reduce mastitis pathogen prevalence by ensuring scientific farm management practices, proper feeding, therapeutic interventions to augment profits in dairying, and improving animal and human health.

scholarly journals Meta-analysis reveals severe pollen limitation for the flowering plants growing in East Himalaya-Hengduan Mountains region

BMC Ecology ◽  
2020 ◽  
Vol 20 (1) ◽  
Author(s):  
Xianfeng Jiang ◽  
Yanping Xie
Keyword(s):  
Confidence Interval ◽  
Pollen Limitation ◽  
Meta Analysis ◽  
Flowering Plants ◽  
Biodiversity Hotspot ◽  
Clear Relationship ◽  
Hengduan Mountains ◽  
Independent Data ◽  
The World ◽  
Global Biodiversity

Abstract Background Pollen limitation occurs widely and has an important effect on flowering plants. The East Himalaya-Hengduan Mountains region is a global biodiversity hotspot. However, to our knowledge, no study has synthetically assessed the degree of pollen limitation in this area. The present study aims to reveal the degree of pollen limitation for the flowering plants growing on East Himalaya-Hengduan Mountains and to test whether the reproductive features or the elevation is closely correlated with the degree of pollen limitation in this area. Results We complied data from 76 studies, which included 96 species and 108 independent data records. We found that the flowering plants in this area undergo severe pollen limitation [overall Hedges’ d = 2.004, with a 95% confidence interval (1.3264, 2.6743)] that is much higher than that of the flowering plants growing in many other regions around the world. The degree of pollen limitation was tested to determine the correlation with the capacity for autonomous self-reproduction and with the pollination pattern (generalized vs. specialized pollination) of plants. In addition, we found a clear relationship between elevation and the degree of pollen limitation, which indicates that plants might undergo more severe pollen limitation in relatively high places. Conclusions This paper is the first to address the severe pollen limitation of the flowering plants growing in East Himalaya-Hengduan Mountains region. Moreover, we reveal the positive correlation between elevation and the degree of pollen limitation.

scholarly journals Toxoplasma gondii infection in domestic and wild felids as public health concerns: a systematic review and meta-analysis

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Kareem Hatam-Nahavandi ◽  
Rafael Calero-Bernal ◽  
Mohammad Taghi Rahimi ◽  
Abdol Sattar Pagheh ◽  
Mehdi Zarean ◽  
...  
Keyword(s):  
Public Health ◽  
Toxoplasma Gondii ◽  
Meta Analysis ◽  
Domestic Cats ◽  
Potential Threat ◽  
Pooled Prevalence ◽  
Wild Felids ◽  
Global Status ◽  
The One ◽  
Toxoplasma Gondii Infection

AbstractFelidae as definitive hosts for Toxoplasma gondii play a major role in transmission to all warm-blooded animals trough oocysts dissemination. Therefore the current comprehensive study was performed to determine the global status of T. gondii infection in domestic and wild felids aiming to provide comprehensive data of interest for further intervention approaching the One Health perspective. Different databases were searched by utilizing particular key words for publications related to T. gondii infecting domestic and wild feline host species, worldwide, from 1970 to 2020. The review of 337 reports showed that the seroprevalence of T. gondii in domestic cats and wild felids was estimated in 37.5% (95% CI 34.7–40.3) (I2 = 98.3%, P < 0.001) and 64% (95% CI 60–67.9) (I2 = 88%, P < 0.0001), respectively. The global pooled prevalence of oocysts in the fecal examined specimens from domestic cats was estimated in 2.6% (95% CI 1.9–3.3) (I2 = 96.1%, P < 0.0001), and that in fecal samples from wild felids was estimated in 2.4% (95% CI 1.1–4.2) (I2 = 86.4%, P < 0.0001). In addition, from 13,252 examined soil samples in 14 reviewed studies, the pooled occurrence of T. gondii oocysts was determined in 16.2% (95% CI 7.66–27.03%). The observed high rates of anti-T. gondii antibodies seroprevalence levels and oocyst excretion frequency in the felids, along with soil (environmental) contamination with oocysts may constitute a potential threat to animal and public health, and data will result of interest in further prophylaxis programs.

scholarly journals First report on the prevalence of Fasciola hepatica in the endangered Père David’s deer (Elaphurus davidianus) in China

2020 ◽  
Vol 16 (1) ◽  
Author(s):  
Si-Yang Huang ◽  
Jing-Zhi Gong ◽  
Yi-Jun Ren ◽  
Ming Pan ◽  
Wei-Min Cai ◽  
...  
Keyword(s):  
Fasciola Hepatica ◽  
Potential Threat ◽  
Prevalence Data ◽  
First Report ◽  
Natural Reserve ◽  
Zoonotic Parasite ◽  
The World ◽  
Père David’S Deer ◽  
Microscopy Examination ◽  
Elaphurus Davidianus

Abstract Background Fasciola hepatica is an important zoonotic parasite that causes fasciolosis in a broad range of animals. No information is available about the prevalence of F. hepatica in Père David’s deer (Elaphurus davidianus), an endangered species in the world. Therefore, the purpose of the study was to evaluate the prevalence of fasciolosis in Père David’s deer in the Dafeng Elk National Natural Reserve, Jiangsu province, China. Results In this study, 142 fecal samples from Père David’s deer were analyzed for F. hepatica by microscopy and nest-PCR. Only one sample was positive for F. hepatica according to microscopy examination, while 18 of 142 (12.68, 95%CI: 2.841–22.45%) samples were positive for F. hepatica according to nest-PCR results. Conclusions This is the first report of prevalence of F. hepatica in Père David’s deer. The prevalence data indicated that F. hepatica was also present in this endangered animal, which may cause a potential threat to this precious species.

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