Relative Efficiency of Pitfall vs. Bait Trapping for Capturing Taxonomic and Functional Diversities of Ant Assemblages in Temperate Heathlands

Whereas bait and pitfall trappings are two of the most commonly used techniques for sampling ant assemblages, they have not been properly compared in temperate open habitats. In this study, taking advantage of a large-scale project of heathland restoration (three sites along the French Atlantic Coast forming a north-south gradient), we evaluated the relative efficiency of these two methods for assessing both taxonomic and functional diversities of ants. Ants were collected and identified to species level, and six traits related to morphology, behavior (diet, dispersal and maximum foraging distance), and social life (colony size and dominance type) were attributed to all 23 species. Both observed and estimated species richness were significantly higher in pitfalls compared to spatially pair-matched bait traps. Functional richness followed the same pattern, with consistent results for both community weighted mean (CWM) and Rao’s quadratic entropy. Taxonomic and functional diversities from pitfall assemblages increased from north to south locations, following a pattern frequently reported at larger spatial scales. Bait trapping can hardly be considered a complementary method to pitfall trapping for sampling ants in open temperate habitats, as it appears basically redundant with the latter sampling method, at least in coastal heathlands of the East-Atlantic coast.

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Relative Efficiency of Pitfall vs. Bait Trapping for Capturing Taxonomic and Functional Diversities of Ant Assemblages in Temperate Heathlands

10.20944/preprints202012.0590.v1 ◽

2020 ◽

Author(s):

Axel Hacala ◽

Clément Gouraud ◽

Wouter Dekoninck ◽

Julien Pétillon

Keyword(s):

Relative Efficiency ◽

Social Life ◽

Large Scale ◽

Spatial Scales ◽

Atlantic Coast ◽

Pitfall Traps ◽

Quadratic Entropy ◽

Complementary Method ◽

Ant Assemblages ◽

Bait Traps

Whereas bait and pitfall trappings are two of the most commonly used techniques for sampling ant assemblages, they have not been properly compared in temperate open habitats. In this study, taking advantage of a large-scale project of heathland restoration (3 sites along the French Atlantic Coast forming a north-south gradient), we evaluated the relative efficiency of these two methods for assessing both taxonomic and functional diversities of ants while accounting for a north south diversity gradient. Ants were collected and identified to species level, and 6 traits related to morphology, behavior (including diet, dispersal and maximum foraging distance) and social life (colony size and dominance type) were attributed to all 23 species. Both observed and estimated species were significantly higher in pitfalls compared to spatially pair-matched bait traps. Functional diversity followed the same pattern, with consistent results for both community weighted mean (CWM) and Rao’s quadratic entropy. Taxonomic and functional diversities from pitfall assemblages increased from North to South locations, following a frequently reported pattern at larger spatial scales. Bait traps can hardly be considered a complementary method to pitfall traps for sampling ants in open temperate habitats, as it appears basically redundant with pitfall traps at least on maritime cliff-tops of the East-Atlantic coast.

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Analysis of 220 Years of Floodplain Population Dynamics in the US at Different Spatial Scales

Water ◽

10.3390/w13020141 ◽

2021 ◽

Vol 13 (2) ◽

pp. 141

Author(s):

Firoza Akhter ◽

Maurizio Mazzoleni ◽

Luigia Brandimarte

Keyword(s):

Population Dynamics ◽

Large Scale ◽

Spatial Scales ◽

National Level ◽

State Level ◽

Economic Activities ◽

Protection Measures ◽

Management Planning ◽

The Us ◽

Over Time

In this study, we explore the long-term trends of floodplain population dynamics at different spatial scales in the contiguous United States (U.S.). We exploit different types of datasets from 1790–2010—i.e., decadal spatial distribution for the population density in the US, global floodplains dataset, large-scale data of flood occurrence and damage, and structural and nonstructural flood protection measures for the US. At the national level, we found that the population initially settled down within the floodplains and then spread across its territory over time. At the state level, we observed that flood damages and national protection measures might have contributed to a learning effect, which in turn, shaped the floodplain population dynamics over time. Finally, at the county level, other socio-economic factors such as local flood insurances, economic activities, and socio-political context may predominantly influence the dynamics. Our study shows that different influencing factors affect floodplain population dynamics at different spatial scales. These facts are crucial for a reliable development and implementation of flood risk management planning.

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Insectivorous songbirds as early indicators of future defoliation by spruce budworm

Landscape Ecology ◽

10.1007/s10980-021-01300-z ◽

2021 ◽

Author(s):

Marion Germain ◽

Daniel Kneeshaw ◽

Louis De Grandpré ◽

Mélanie Desrochers ◽

Patrick M. A. James ◽

...

Keyword(s):

Large Scale ◽

Spatial Scales ◽

Spruce Budworm ◽

Detection Methods ◽

Maximum Probability ◽

Point Count ◽

Probability Of Presence ◽

Time Lagged ◽

One Year ◽

Local Sampling

Abstract Context Although the spatiotemporal dynamics of spruce budworm outbreaks have been intensively studied, forecasting outbreaks remains challenging. During outbreaks, budworm-linked warblers (Tennessee, Cape May, and bay-breasted warbler) show a strong positive response to increases in spruce budworm, but little is known about the relative timing of these responses. Objectives We hypothesized that these warblers could be used as sentinels of future defoliation of budworm host trees. We examined the timing and magnitude of the relationships between defoliation by spruce budworm and changes in the probability of presence of warblers to determine whether they responded to budworm infestation before local defoliation being observed by standard detection methods. Methods We modelled this relationship using large-scale point count surveys of songbirds and maps of cumulative time-lagged defoliation over multiple spatial scales (2–30 km radius around sampling points) in Quebec, Canada. Results All three warbler species responded positively to defoliation at each spatial scale considered, but the timing of their response differed. Maximum probability of presence of Tennessee and Cape May warbler coincided with observations of local defoliation, or provided a one year warning, making them of little use to guide early interventions. In contrast, the probability of presence of bay-breasted warbler consistently increased 3–4 years before defoliation was detectable. Conclusions Early detection is a critical step in the management of spruce budworm outbreaks and rapid increases in the probability of presence of bay-breasted warbler could be used to identify future epicenters and target ground-based local sampling of spruce budworm.

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The Effect of Climate and Human Pressures on Functional Diversity and Species Richness Patterns of Amphibians, Reptiles and Mammals in Europe

Diversity ◽

10.3390/d13060275 ◽

2021 ◽

Vol 13 (6) ◽

pp. 275

Author(s):

Mariana A. Tsianou ◽

Maria Lazarina ◽

Danai-Eleni Michailidou ◽

Aristi Andrikou-Charitidou ◽

Stefanos P. Sgardelis ◽

...

Keyword(s):

Species Richness ◽

Functional Diversity ◽

Agricultural Land ◽

Influential Factor ◽

Climatic Variables ◽

Quadratic Entropy ◽

Functional Richness ◽

Precipitation Seasonality ◽

Rao’S Quadratic Entropy ◽

Richness Patterns

The ongoing biodiversity crisis reinforces the urgent need to unravel diversity patterns and the underlying processes shaping them. Although taxonomic diversity has been extensively studied and is considered the common currency, simultaneously conserving other facets of diversity (e.g., functional diversity) is critical to ensure ecosystem functioning and the provision of ecosystem services. Here, we explored the effect of key climatic factors (temperature, precipitation, temperature seasonality, and precipitation seasonality) and factors reflecting human pressures (agricultural land, urban land, land-cover diversity, and human population density) on the functional diversity (functional richness and Rao’s quadratic entropy) and species richness of amphibians (68 species), reptiles (107 species), and mammals (176 species) in Europe. We explored the relationship between different predictors and diversity metrics using generalized additive mixed model analysis, to capture non-linear relationships and to account for spatial autocorrelation. We found that at this broad continental spatial scale, climatic variables exerted a significant effect on the functional diversity and species richness of all taxa. On the other hand, variables reflecting human pressures contributed significantly in the models even though their explanatory power was lower compared to climatic variables. In most cases, functional richness and Rao’s quadratic entropy responded similarly to climate and human pressures. In conclusion, climate is the most influential factor in shaping both the functional diversity and species richness patterns of amphibians, reptiles, and mammals in Europe. However, incorporating factors reflecting human pressures complementary to climate could be conducive to us understanding the drivers of functional diversity and richness patterns.

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Phylogeography in an “oyster” shell provides first insights into the genetic structure of an extinct Ostrea edulis population

Scientific Reports ◽

10.1038/s41598-021-82020-x ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Sarah Hayer ◽

Dirk Brandis ◽

Alexander Immel ◽

Julian Susat ◽

Montserrat Torres-Oliva ◽

...

Keyword(s):

Large Scale ◽

Wadden Sea ◽

Atlantic Coast ◽

Phylogenetic Reconstruction ◽

Oyster Shell ◽

Glacial Refugia ◽

Late Nineteenth Century ◽

Ostrea Edulis ◽

Geographic Ranges ◽

The North

AbstractThe historical phylogeography of Ostrea edulis was successfully depicted in its native range for the first time using ancient DNA methods on dry shells from museum collections. This research reconstructed the historical population structure of the European flat oyster across Europe in the 1870s—including the now extinct population in the Wadden Sea. In total, four haplogroups were identified with one haplogroup having a patchy distribution from the North Sea to the Atlantic coast of France. This irregular distribution could be the result of translocations. The other three haplogroups are restricted to narrow geographic ranges, which may indicate adaptation to local environmental conditions or geographical barriers to gene flow. The phylogenetic reconstruction of the four haplogroups suggests the signatures of glacial refugia and postglacial expansion. The comparison with present-day O. edulis populations revealed a temporally stable population genetic pattern over the past 150 years despite large-scale translocations. This historical phylogeographic reconstruction was able to discover an autochthonous population in the German and Danish Wadden Sea in the late nineteenth century, where O. edulis is extinct today. The genetic distinctiveness of a now-extinct population hints at a connection between the genetic background of O. edulis in the Wadden Sea and for its absence until today.

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Mapping High Spatiotemporal-Resolution Soil Moisture by Upscaling Sparse Ground-Based Observations Using a Bayesian Linear Regression Method for Comparison with Microwave Remotely Sensed Soil Moisture Products

Remote Sensing ◽

10.3390/rs13020228 ◽

2021 ◽

Vol 13 (2) ◽

pp. 228

Author(s):

Jian Kang ◽

Rui Jin ◽

Xin Li ◽

Yang Zhang

Keyword(s):

Soil Moisture ◽

Large Scale ◽

Spatial Scales ◽

Microwave Remote Sensing ◽

In Situ Measurements ◽

Spatial Density ◽

Linear Regression Method ◽

Spatiotemporal Resolution ◽

Pixel Scale

In recent decades, microwave remote sensing (RS) has been used to measure soil moisture (SM). Long-term and large-scale RS SM datasets derived from various microwave sensors have been used in environmental fields. Understanding the accuracies of RS SM products is essential for their proper applications. However, due to the mismatched spatial scale between the ground-based and RS observations, the truth at the pixel scale may not be accurately represented by ground-based observations, especially when the spatial density of in situ measurements is low. Because ground-based observations are often sparsely distributed, temporal upscaling was adopted to transform a few in situ measurements into SM values at a pixel scale of 1 km by introducing the temperature vegetation dryness index (TVDI) related to SM. The upscaled SM showed high consistency with in situ SM observations and could accurately capture rainfall events. The upscaled SM was considered as the reference data to evaluate RS SM products at different spatial scales. In regard to the validation results, in addition to the correlation coefficient (R) of the Soil Moisture Active Passive (SMAP) SM being slightly lower than that of the Climate Change Initiative (CCI) SM, SMAP had the best performance in terms of the root-mean-square error (RMSE), unbiased RMSE and bias, followed by the CCI. The Soil Moisture and Ocean Salinity (SMOS) products were in worse agreement with the upscaled SM and were inferior to the R value of the X-band SM of the Advanced Microwave Scanning Radiometer 2 (AMSR2). In conclusion, in the study area, the SMAP and CCI SM are more reliable, although both products were underestimated by 0.060 cm3 cm−3 and 0.077 cm3 cm−3, respectively. If the biases are corrected, then the improved SMAP with an RMSE of 0.043 cm3 cm−3 and the CCI with an RMSE of 0.039 cm3 cm−3 will hopefully reach the application requirement for an accuracy with an RMSE less than 0.040 cm3 cm−3.

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Biogeography of acoustic biodiversity of NW Mediterranean coralligenous reefs

Scientific Reports ◽

10.1038/s41598-021-96378-5 ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Lucia Di Iorio ◽

Manon Audax ◽

Julie Deter ◽

Florian Holon ◽

Julie Lossent ◽

...

Keyword(s):

Large Scale ◽

Spatial Scales ◽

Western Mediterranean ◽

Ecosystem Functions ◽

Marine Biodiversity ◽

Predator Species ◽

The North ◽

Mediterranean Habitats ◽

Geographical Regions ◽

Nw Mediterranean

AbstractMonitoring the biodiversity of key habitats and understanding the drivers across spatial scales is essential for preserving ecosystem functions and associated services. Coralligenous reefs are threatened marine biodiversity hotspots that are challenging to monitor. As fish sounds reflect biodiversity in other habitats, we unveiled the biogeography of coralligenous reef sounds across the north-western Mediterranean using data from 27 sites covering 2000 km and 3 regions over a 3-year period. We assessed how acoustic biodiversity is related to habitat parameters and environmental status. We identified 28 putative fish sound types, which is up to four times as many as recorded in other Mediterranean habitats. 40% of these sounds are not found in other coastal habitats, thus strongly related to coralligenous reefs. Acoustic diversity differed between geographical regions. Ubiquitous sound types were identified, including sounds from top-predator species and others that were more specifically related to the presence of ecosystem engineers (red coral, gorgonians), which are key players in maintaining habitat function. The main determinants of acoustic community composition were depth and percentage coverage of coralligenous outcrops, suggesting that fish-related acoustic communities exhibit bathymetric stratification and are related to benthic reef assemblages. Multivariate analysis also revealed that acoustic communities can reflect different environmental states. This study presents the first large-scale map of acoustic fish biodiversity providing insights into the ichthyofauna that is otherwise difficult to assess because of reduced diving times. It also highlights the potential of passive acoustics in providing new aspects of the correlates of biogeographical patterns of this emblematic habitat relevant for monitoring and conservation.

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Repeated surveying over 6 years reveals that fine-scale habitat variables are key to tropical mountain ant assemblage composition and functional diversity

Scientific Reports ◽

10.1038/s41598-020-80077-8 ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Mulalo M. Muluvhahothe ◽

Grant S. Joseph ◽

Colleen L. Seymour ◽

Thinandavha C. Munyai ◽

Stefan H. Foord

Keyword(s):

Climate Change ◽

Species Composition ◽

High Altitude ◽

Functional Diversity ◽

Large Scale ◽

Climate Models ◽

Spatial Scales ◽

Abiotic Factors ◽

Composition Analysis ◽

Fine Scale

AbstractHigh-altitude-adapted ectotherms can escape competition from dominant species by tolerating low temperatures at cooler elevations, but climate change is eroding such advantages. Studies evaluating broad-scale impacts of global change for high-altitude organisms often overlook the mitigating role of biotic factors. Yet, at fine spatial-scales, vegetation-associated microclimates provide refuges from climatic extremes. Using one of the largest standardised data sets collected to date, we tested how ant species composition and functional diversity (i.e., the range and value of species traits found within assemblages) respond to large-scale abiotic factors (altitude, aspect), and fine-scale factors (vegetation, soil structure) along an elevational gradient in tropical Africa. Altitude emerged as the principal factor explaining species composition. Analysis of nestedness and turnover components of beta diversity indicated that ant assemblages are specific to each elevation, so species are not filtered out but replaced with new species as elevation increases. Similarity of assemblages over time (assessed using beta decay) did not change significantly at low and mid elevations but declined at the highest elevations. Assemblages also differed between northern and southern mountain aspects, although at highest elevations, composition was restricted to a set of species found on both aspects. Functional diversity was not explained by large scale variables like elevation, but by factors associated with elevation that operate at fine scales (i.e., temperature and habitat structure). Our findings highlight the significance of fine-scale variables in predicting organisms’ responses to changing temperature, offering management possibilities that might dilute climate change impacts, and caution when predicting assemblage responses using climate models, alone.

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The Sense of Smell and Aging: What We Have Learned From Population Studies

Innovation in Aging ◽

10.1093/geroni/igaa057.2947 ◽

2020 ◽

Vol 4 (Supplement_1) ◽

pp. 810-811

Author(s):

Jayant Pinto

Keyword(s):

Mental Health ◽

Older Adults ◽

Social Life ◽

Large Scale ◽

Population Studies ◽

Vital Role ◽

Sensory Function ◽

Physical And Mental Health ◽

Sense Of Smell ◽

Health Aging

Abstract Decline of the sense of smell with age causes a marked impact on older adults, markedly reducing quality of life. Olfactory dysfunction impairs nutrition, decreases the ability to experience pleasure, and results in depression, among other burdens. Large-scale population studies have identified impaired olfaction as a key heath indicator that predicts the development of decreased physical and mental health, reduced physical activity, weight loss, mild cognitive impairment and dementia, and mortality itself. These data have been generated via analyses of data from several aging cohorts, including the National Social Life, Health, and Aging Project (NSHAP); the Beaver Dam cohort; the Atherosclerosis Risk in Communities project; the Rush Memory and Aging Project; the Health, Aging, and Body Composition project; the Washington Heights/Inwood Columbia Aging Project; among others. In this presentation, we will review the close connection between olfaction, health, aging, including discussion of insights from these studies. We will also discuss emerging data from NSHAP on the effects of sensory function on cognition, mental health, and social interaction, which demonstrate that sensory function plays a vital role in the lives of older adults. Part of a symposium sponsored by Sensory Health Interest Group.

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Tree Diversity Reduces Fungal Endophyte Richness and Diversity in a Large-Scale Temperate Forest Experiment

Diversity ◽

10.3390/d11120234 ◽

2019 ◽

Vol 11 (12) ◽

pp. 234 ◽

Cited By ~ 2

Author(s):

Eric A. Griffin ◽

Joshua G. Harrison ◽

Melissa K. McCormick ◽

Karin T. Burghardt ◽

John D. Parker

Keyword(s):

Phylogenetic Diversity ◽

Large Scale ◽

High Throughput Sequencing ◽

Spatial Scales ◽

Fungal Endophytes ◽

Fungal Endophyte ◽

Tree Diversity ◽

Trophic Levels ◽

Community Diversity ◽

And Function

Although decades of research have typically demonstrated a positive correlation between biodiversity of primary producers and associated trophic levels, the ecological drivers of this association are poorly understood. Recent evidence suggests that the plant microbiome, or the fungi and bacteria found on and inside plant hosts, may be cryptic yet important drivers of important processes, including primary production and trophic interactions. Here, using high-throughput sequencing, we characterized foliar fungal community diversity, composition, and function from 15 broadleaved tree species (N = 545) in a recently established, large-scale temperate tree diversity experiment using over 17,000 seedlings. Specifically, we tested whether increases in tree richness and phylogenetic diversity would increase fungal endophyte diversity (the “Diversity Begets Diversity” hypothesis), as well as alter community composition (the “Tree Diversity–Endophyte Community” hypothesis) and function (the “Tree Diversity–Endophyte Function” hypothesis) at different spatial scales. We demonstrated that increasing tree richness and phylogenetic diversity decreased fungal species and functional guild richness and diversity, including pathogens, saprotrophs, and parasites, within the first three years of a forest diversity experiment. These patterns were consistent at the neighborhood and tree plot scale. Our results suggest that fungal endophytes, unlike other trophic levels (e.g., herbivores as well as epiphytic bacteria), respond negatively to increasing plant diversity.

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