scholarly journals Supervised Segmentation of Ultra-High-Density Drone Lidar for Large-Area Mapping of Individual Trees

2020 ◽  
Vol 12 (19) ◽  
pp. 3260
Author(s):  
Martin Krůček ◽  
Kamil Král ◽  
KC Cushman ◽  
Azim Missarov ◽  
James R. Kellner
Keyword(s):  
Random Error ◽  
Laser Scanning ◽  
Tree Height ◽  
High Density ◽  
Mountain Forest ◽  
Large Area ◽  
Estimation Errors ◽  
Individual Tree ◽  
Individual Trees ◽  
The Impact

We applied a supervised individual-tree segmentation algorithm to ultra-high-density drone lidar in a temperate mountain forest in the southern Czech Republic. We compared the number of trees correctly segmented, stem diameter at breast height (DBH), and tree height from drone-lidar segmentations to field-inventory measurements and segmentations from terrestrial laser scanning (TLS) data acquired within two days of the drone-lidar acquisition. Our analysis detected 51% of the stems >15 cm DBH, and 87% of stems >50 cm DBH. Errors of omission were much more common for smaller trees than for larger ones, and were caused by removal of points prior to segmentation using a low-intensity and morphological filter. Analysis of segmented trees indicates a strong linear relationship between DBH from drone-lidar segmentations and TLS data. The slope of this relationship is 0.93, the intercept is 4.28 cm, and the r2 is 0.98. However, drone lidar and TLS segmentations overestimated DBH for the smallest trees and underestimated DBH for the largest trees in comparison to field data. We evaluate the impact of random error in point locations and variation in footprint size, and demonstrate that random error in point locations is likely to cause an overestimation bias for small-DBH trees. A Random Forest classifier correctly identified broadleaf and needleleaf trees using stem and crown geometric properties with overall accuracy of 85.9%. We used these classifications and DBH estimates from drone-lidar segmentations to apply allometric scaling equations to segmented individual trees. The stand-level aboveground biomass (AGB) estimate using these data is 76% of the value obtained using a traditional field inventory. We demonstrate that 71% of the omitted AGB is due to segmentation errors of omission, and the remaining 29% is due to DBH estimation errors. Our analysis indicates that high-density measurements from low-altitude drone flight can produce DBH estimates for individual trees that are comparable to TLS. These data can be collected rapidly throughout areas large enough to produce landscape-scale estimates. With additional refinement, these estimates could augment or replace manual field inventories, and could support the calibration and validation of current and forthcoming space missions.

scholarly journals Adjudicating Perspectives on Forest Structure: How Do Airborne, Terrestrial, and Mobile Lidar-Derived Estimates Compare?

2021 ◽  
Vol 13 (12) ◽  
pp. 2297
Author(s):  
Jonathon J. Donager ◽  
Andrew J. Sánchez Meador ◽  
Ryan C. Blackburn
Keyword(s):  
Ponderosa Pine ◽  
Laser Scanning ◽  
Canopy Cover ◽  
Basal Area ◽  
Tree Height ◽  
Absolute Error ◽  
Forest Monitoring ◽  
Individual Tree ◽  
Structural Configurations ◽  
Individual Trees

Applications of lidar in ecosystem conservation and management continue to expand as technology has rapidly evolved. An accounting of relative accuracy and errors among lidar platforms within a range of forest types and structural configurations was needed. Within a ponderosa pine forest in northern Arizona, we compare vegetation attributes at the tree-, plot-, and stand-scales derived from three lidar platforms: fixed-wing airborne (ALS), fixed-location terrestrial (TLS), and hand-held mobile laser scanning (MLS). We present a methodology to segment individual trees from TLS and MLS datasets, incorporating eigen-value and density metrics to locate trees, then assigning point returns to trees using a graph-theory shortest-path approach. Overall, we found MLS consistently provided more accurate structural metrics at the tree- (e.g., mean absolute error for DBH in cm was 4.8, 5.0, and 9.1 for MLS, TLS and ALS, respectively) and plot-scale (e.g., R2 for field observed and lidar-derived basal area, m2 ha−1, was 0.986, 0.974, and 0.851 for MLS, TLS, and ALS, respectively) as compared to ALS and TLS. While TLS data produced estimates similar to MLS, attributes derived from TLS often underpredicted structural values due to occlusion. Additionally, ALS data provided accurate estimates of tree height for larger trees, yet consistently missed and underpredicted small trees (≤35 cm). MLS produced accurate estimates of canopy cover and landscape metrics up to 50 m from plot center. TLS tended to underpredict both canopy cover and patch metrics with constant bias due to occlusion. Taking full advantage of minimal occlusion effects, MLS data consistently provided the best individual tree and plot-based metrics, with ALS providing the best estimates for volume, biomass, and canopy cover. Overall, we found MLS data logistically simple, quickly acquirable, and accurate for small area inventories, assessments, and monitoring activities. We suggest further work exploring the active use of MLS for forest monitoring and inventory.

Evaluation of nonlinear equations for predicting diameter from tree height

2012 ◽  
Vol 42 (4) ◽  
pp. 789-806 ◽  
Author(s):  
Huiquan Bi ◽  
Julian C. Fox ◽  
Yun Li ◽  
Yuancai Lei ◽  
Yong Pang
Keyword(s):  
Prediction Accuracy ◽  
Laser Scanning ◽  
Large Scale ◽  
Inverse Function ◽  
Tree Height ◽  
Predictive Performance ◽  
Systematic Evaluation ◽  
Large Area ◽  
Individual Tree ◽  
Breast Height

With the emergence and advancement of airborne laser scanning technology over the past decade, individual tree height can be easily measured over a large area of forests with a comparable degree of accuracy to conventional ground-based methods. In laser scanning based large-scale forest inventories, the need to predict diameter from remotely sensed tree height calls for a systematic evaluation of equation forms as the first step towards a well-developed approach to developing diameter–height equations. This study evaluated more than 30 height–diameter equations in the forest biometrics literature to select candidates for deriving equation forms for diameter–height equations. The evaluation was based on four criteria: (i) the height–diameter function is inversable; (ii) the inverse function is continuous and monotonically increasing over a specified working range of total tree height; (iii) diameter at breast height is equal to zero when tree height equals breast height in the inverse function; and preferably, (iv) the inverse function has an inflection point that is consistent with biological expectations. A total of 12 candidate equation forms were derived, which included five two-parameter and seven three-parameter equations. The estimation properties and predictive performance of these 12 equation forms were further evaluated and compared through repeated sampling and fitting using data from 3581 trees destructively sampled for taper measurements from Pinus radiata D. Don plantations across New South Wales, Australia. Three equation forms, including the constrained Richards, Weibull, and the combined power and exponential function, displayed superior prediction accuracy and estimation properties and so were recommended as the primary equation forms for developing diameter–height equations. The remaining equation forms were marred by either lower prediction accuracy or poorer estimation properties or both. The three recommended equation forms should only serve as basic deterministic specifications upon which other tree and stand variables should be incorporated as predictors to further improve their predictive performance.

scholarly journals Spatial Models With Inter-Tree Competition From Airborne Laser Scanning Improve Estimates of Genetic Variance

2021 ◽  
Vol 11 ◽  
Author(s):  
David Pont ◽  
Heidi S. Dungey ◽  
Mari Suontama ◽  
Grahame T. Stovold
Keyword(s):  
Laser Scanning ◽  
Management Practices ◽  
Spatial Models ◽  
Airborne Laser Scanning ◽  
Tree Level ◽  
Residual Variance ◽  
Spatial Effects ◽  
Individual Tree ◽  
Airborne Laser ◽  
Individual Trees

Phenotyping individual trees to quantify interactions among genotype, environment, and management practices is critical to the development of precision forestry and to maximize the opportunity of improved tree breeds. In this study we utilized airborne laser scanning (ALS) data to detect and characterize individual trees in order to generate tree-level phenotypes and tree-to-tree competition metrics. To examine our ability to account for environmental variation and its relative importance on individual-tree traits, we investigated the use of spatial models using ALS-derived competition metrics and conventional autoregressive spatial techniques. Models utilizing competition covariate terms were found to quantify previously unexplained phenotypic variation compared with standard models, substantially reducing residual variance and improving estimates of heritabilities for a set of operationally relevant traits. Models including terms for spatial autocorrelation and competition performed the best and were labelled ACE (autocorrelation-competition-error) models. The best ACE models provided statistically significant reductions in residuals ranging from −65.48% for tree height (H) to −21.03% for wood stiffness (A), and improvements in narrow sense heritabilities from 38.64% for H to 14.01% for A. Individual tree phenotyping using an ACE approach is therefore recommended for analyses of research trials where traits are susceptible to spatial effects.

scholarly journals Predicting Growing Stock Volume of Eucalyptus Plantations Using 3-D Point Clouds Derived from UAV Imagery and ALS Data

Forests ◽  
2019 ◽  
Vol 10 (10) ◽  
pp. 905 ◽  
Author(s):  
Guerra-Hernández ◽  
Cosenza ◽  
Cardil ◽  
Silva ◽  
Botequim ◽  
...  
Keyword(s):  
Laser Scanning ◽  
Basal Area ◽  
Remote Sensing Data ◽  
Tree Height ◽  
Point Clouds ◽  
Volume Estimation ◽  
P Value ◽  
Test Statistic ◽  
Individual Tree ◽  
Significant Difference

Estimating forest inventory variables is important in monitoring forest resources and mitigating climate change. In this respect, forest managers require flexible, non-destructive methods for estimating volume and biomass. High-resolution and low-cost remote sensing data are increasingly available to measure three-dimensional (3D) canopy structure and to model forest structural attributes. The main objective of this study was to evaluate and compare the individual tree volume estimates derived from high-density point clouds obtained from airborne laser scanning (ALS) and digital aerial photogrammetry (DAP) in Eucalyptus spp. plantations. Object-based image analysis (OBIA) techniques were applied for individual tree crown (ITC) delineation. The ITC algorithm applied correctly detected and delineated 199 trees from ALS-derived data, while 192 trees were correctly identified using DAP-based point clouds acquired from Unmanned Aerial Vehicles (UAV), representing accuracy levels of respectively 62% and 60%. Addressing volume modelling, non-linear regression fit based on individual tree height and individual crown area derived from the ITC provided the following results: Model Efficiency (Mef) = 0.43 and 0.46, Root Mean Square Error (RMSE) = 0.030 m3 and 0.026 m3, rRMSE = 20.31% and 19.97%, and an approximately unbiased results (0.025 m3 and 0.0004 m3) using DAP and ALS-based estimations, respectively. No significant difference was found between the observed value (field data) and volume estimation from ALS and DAP (p-value from t-test statistic = 0.99 and 0.98, respectively). The proposed approaches could also be used to estimate basal area or biomass stocks in Eucalyptus spp. plantations.

Retrieving individual tree heights from a point cloud generated with optical imagery from an unmanned aerial vehicle (UAV)

2020 ◽  
Vol 50 (10) ◽  
pp. 1012-1024
Author(s):  
Meimei Wang ◽  
Jiayuan Lin
Keyword(s):  
Unmanned Aerial Vehicle ◽  
Point Cloud ◽  
Laser Scanning ◽  
Tree Height ◽  
Absolute Error ◽  
Coefficient Of Determination ◽  
Surface Model ◽  
Individual Tree ◽  
Aerial Vehicle ◽  
The Mean

Individual tree height (ITH) is one of the most important vertical structure parameters of a forest. Field measurement and laser scanning are very expensive for large forests. In this paper, we propose a cost-effective method to acquire ITHs in a forest using the optical overlapping images captured by an unmanned aerial vehicle (UAV). The data sets, including a point cloud, a digital surface model (DSM), and a digital orthorectified map (DOM), were produced from the UAV imagery. The canopy height model (CHM) was obtained by subtracting the digital elevation model (DEM) from the DSM removed of low vegetation. Object-based image analysis was used to extract individual tree crowns (ITCs) from the DOM, and ITHs were initially extracted by overlaying ITC outlines on the CHM. As the extracted ITHs were generally slightly shorter than the measured ITHs, a linear relationship was established between them. The final ITHs of the test site were retrieved by inputting extracted ITHs into the linear regression model. As a result, the coefficient of determination (R2), the root mean square error (RMSE), the mean absolute error (MAE), and the mean relative error (MRE) of the retrieved ITHs against the measured ITHs were 0.92, 1.08 m, 0.76 m, and 0.08, respectively.

Individual Tree Measurement in Tropical Environment using Terrestrial Laser Scanning

2015 ◽  
Vol 73 (5) ◽  
Author(s):  
Muhammad Zulkarnain Abdul Rahman ◽  
Zulkepli Majid ◽  
Md Afif Abu Bakar ◽  
Abd Wahid Rasib ◽  
Wan Hazli Wan Kadir
Keyword(s):  
Laser Scanning ◽  
Mean Squared Error ◽  
Tree Height ◽  
Point Clouds ◽  
Tree Crown ◽  
Individual Tree ◽  
Branch Diameter ◽  
Reference Tree ◽  
Crown Volume ◽  
Tree Branch

Detailed forest inventory and mensuration of individual trees have drawn attention of research society mainly to support sustainable forest management. This study aims at estimating individual tree attributes from high density point cloud obtained by terrestrial laser scanner (TLS). The point clouds were obtained over single reference tree and group of trees in forest area. The reference tree is treated as benchmark since detailed measurements of branch diameter were made on selected branches with different sizes and locations. Diameter at breast height (DBH) was measured for trees in forest. Furthermore tree height, height to crown base, crown volume and tree branch volume were also estimated for each tree. Branch diameter is estimated directly from the point clouds based on semi-automatic approach of model fitting i.e. sphere, ellipse and cylinder. Tree branch volume is estimated based on the volume of the fitted models. Tree height and height to crown base are computed using histogram analysis of the point clouds elevation. Tree crown volume is estimated by fitting a convex-hull on the tree crown. The results show that the Root Mean Squared Error (RMSE) of the estimated tree branch diameter does not have a specific trend with branch sizes and number of points used for fitting process. This explains complicated distribution of point clouds over the branches. Overall cylinder model produces good results with most branch sizes and number of point clouds for fitting. The cylinder fitting approach shows significantly better estimation results compared to sphere and ellipse fitting models.   

ESTIMATING SINGLE TREE STEM AND BRANCH BIOMASS USING TERRESTRIAL LASER SCANNING

2015 ◽  
Vol 77 (26) ◽  
Author(s):  
Nurliyana Izzati Ishak ◽  
Md Afif Abu Bakar ◽  
Muhammad Zulkarnain Abdul Rahman ◽  
Abd Wahid Rasib ◽  
Kasturi Devi Kanniah ◽  
...  
Keyword(s):  
Laser Scanning ◽  
Terrestrial Laser Scanning ◽  
Stem Volume ◽  
Biomass Estimation ◽  
Forest Plot ◽  
Individual Tree ◽  
Matching Process ◽  
Branch Biomass ◽  
Individual Trees ◽  
Tree Stem

This paper presents a novel non-destructive approach for individual tree stem and branch biomass estimation using terrestrial laser scanning data. The study area is located at the Royal Belum Reserved Forest area, Gerik, Perak. Each forest plot was designed with a circular shape and contains several scanning locations to ensure good visibility of each tree. Unique tree signage was located on trees with diameter at breast height (DBH) of 10cm and above.  Extractions of individual trees were done manually and the matching process with the field collected tree properties were relied on the tree signage and tree location as collected by total station. Individual tree stems were reconstructed based on cylinder models from which the total stem volume was calculated. Biomass of individual tree stems was calculated by multiplying stem volume with specific wood density. Biomass of individual was estimated using similar concept of tree stem with the volume estimated from alpha-hull shape. The root mean squared errors (RMSE) of estimated biomass are 50.22kg and 27.20kg for stem and branch respectively. 

scholarly journals ACCURACY ASSESSMENT OF CROWN DELINEATION METHODS FOR THE INDIVIDUAL TREES USING LIDAR DATA

2016 ◽  
Vol XLI-B8 ◽  
pp. 585-588
Author(s):  
K. T Chang ◽  
C. Lin ◽  
Y. C. Lin ◽  
J. K. Liu
Keyword(s):  
Forest Canopy ◽  
Accuracy Assessment ◽  
Tree Height ◽  
Experimental Results ◽  
Estimation Methods ◽  
Surface Model ◽  
Individual Tree ◽  
Free Process ◽  
Crown Shape ◽  
Individual Trees

Forest canopy density and height are used as variables in a number of environmental applications, including the estimation of biomass, forest extent and condition, and biodiversity. The airborne Light Detection and Ranging (LiDAR) is very useful to estimate forest canopy parameters according to the generated canopy height models (CHMs). The purpose of this work is to introduce an algorithm to delineate crown parameters, e.g. tree height and crown radii based on the generated rasterized CHMs. And accuracy assessment for the extraction of volumetric parameters of a single tree is also performed via manual measurement using corresponding aerial photo pairs. A LiDAR dataset of a golf course acquired by Leica ALS70-HP is used in this study. Two algorithms, i.e. a traditional one with the subtraction of a digital elevation model (DEM) from a digital surface model (DSM), and a pit-free approach are conducted to generate the CHMs firstly. Then two algorithms, a multilevel morphological active-contour (MMAC) and a variable window filter (VWF), are implemented and used in this study for individual tree delineation. Finally, experimental results of two automatic estimation methods for individual trees can be evaluated with manually measured stand-level parameters, i.e. tree height and crown diameter. The resulting CHM generated by a simple subtraction is full of empty pixels (called "pits") that will give vital impact on subsequent analysis for individual tree delineation. The experimental results indicated that if more individual trees can be extracted, tree crown shape will became more completely in the CHM data after the pit-free process.

scholarly journals Individual tree extraction from terrestrial laser scanning data via graph pathing

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Di Wang ◽  
Xinlian Liang ◽  
Gislain II Mofack ◽  
Olivier Martin-Ducup
Keyword(s):  
Laser Scanning ◽  
Terrestrial Laser Scanning ◽  
Point Clouds ◽  
Tree Level ◽  
Forest Types ◽  
Computationally Efficient ◽  
Large Area ◽  
Individual Tree ◽  
Single Crown ◽  
Tree Extraction

Abstract Background Individual tree extraction from terrestrial laser scanning (TLS) data is a prerequisite for tree-scale estimations of forest biophysical properties. This task currently is undertaken through laborious and time-consuming manual assistance and quality control. This study presents a new fully automatic approach to extract single trees from large-area TLS data. This data-driven method operates exclusively on a point cloud graph by path finding, which makes our method computationally efficient and universally applicable to data from various forest types. Results We demonstrated the proposed method on two openly available datasets. First, we achieved state-of-the-art performance on locating single trees on a benchmark dataset by significantly improving the mean accuracy by over 10% especially for difficult forest plots. Second, we successfully extracted 270 trees from one hectare temperate forest. Quantitative validation resulted in a mean Intersection over Union (mIoU) of 0.82 for single crown segmentation, which further led to a relative root mean square error (RMSE%) of 21.2% and 23.5% for crown area and tree volume estimations, respectively. Conclusions Our method allows automated access to individual tree level information from TLS point clouds. The proposed method is free from restricted assumptions of forest types. It is also computationally efficient with an average processing time of several seconds for one million points. It is expected and hoped that our method would contribute to TLS-enabled wide-area forest qualifications, ranging from stand volume and carbon stocks modelling to derivation of tree functional traits as part of the global ecosystem understanding.

scholarly journals Preliminary assessment of ironwood (Eusideroxylon zwageri Teijsm. & Binnend.) stand on the KPPN Bulian of the District VIII of PT. Wirakarya Sakti, Jambi as seed source candidate

2021 ◽  
Vol 914 (1) ◽  
pp. 012002
Author(s):  
Prastyono ◽  
L Haryjanto ◽  
A I Putri ◽  
T Herawan ◽  
M A Fauzi ◽  
...  
Keyword(s):  
Forest Floor ◽  
Tree Height ◽  
Seed Source ◽  
Preliminary Assessment ◽  
Individual Tree ◽  
Seed Sources ◽  
Timber Tree ◽  
Individual Trees ◽  
Seed Stand ◽  
Eusideroxylon Zwageri

Abstract Ironwood (Eusideroxylon zwageri) is one of Indonesia’s most economically valuable timber tree species and was listed as Vulnerable in 1998 by the IUCN. To support conservation activities and establish E. zwageri’s plantation, good quality planting stocks should be collected from specific seed sources. Currently, there is only one ironwood seed source in Sumatra that has been registered. This study aimed to assess the potential for an ironwood stand on the KPPN Bulian of the District VIII of PT. Wirakarya Sakti is to be proposed as a seed source. The assessment was conducted on July 2020 by a 100% inventory of ironwood trees in the area of 43 ha. Every individual tree and copy of ironwood was measured for its stem diameter and tree height and observed for its health, flowers, fruits, and seedlings in the ground. In total, 1,029 individual trees, copies and seedlings were recorded. Among them, 116 trees were found to have young fruits and seedlings emergence in the forest floor. Generally, the ironwood stand is sound and meets the criteria to be registered as an identified seed stand of ironwood.

Sign in / Sign up

Export Citation Format

Share Document