scholarly journals Synthesis of Complex Organic Molecules in Soft X-Ray Irradiated Ices

2019 ◽  
Vol 879 (1) ◽  
pp. 21 ◽  
Author(s):  
A. Ciaravella ◽  
A. Jiménez-Escobar ◽  
C. Cecchi-Pestellini ◽  
C. H. Huang ◽  
N. E. Sie ◽  
...  
2021 ◽  
Vol 648 ◽  
pp. A72
Author(s):  
Yao Wang ◽  
Fujun Du ◽  
Dmitry Semenov ◽  
Hongchi Wang ◽  
Juan Li

Context. The chemical differentiation of seven complex organic molecules (COMs) in the extended region around Sagittarius B2 (Sgr B2) has been previously observed: CH2OHCHO, CH3OCHO, t-HCOOH, C2H5OH, and CH3NH2 were detected both in the extended region and near the hot cores Sgr B2(N) and Sgr B2(M), while CH3OCH3 and C2H5CN were only detected near the hot cores. The density and temperature in the extended region are relatively low in comparison with Sgr B2(N) and Sgr B2(M). Different desorption mechanisms, including photodesorption, reactive desorption, and shock heating, and a few other mechanisms have been proposed to explain the observed COMs in the cold regions. However, they fail to explain the deficiency of CH3OCH3 and C2H5CN in the extended region around Sgr B2. Aims. Based on known physical properties of the extended region around Sgr B2, we explored under what physical conditions the chemical simulations can fit the observations and explain the different spatial distribution of these seven species in the extended region around Sgr B2. Methods. We used the macroscopic Monte Carlo method to perform a detailed parameter space study. A static physical model and an evolving physical model including a cold phase and a warm-up phase were used, respectively. The fiducial models adopt the observed physical parameters except for the local cosmic ray ionization rate ζCR. In addition to photodesorption that is included in all models, we investigated how chain reaction mechanism, shocks, an X-ray burst, enhanced reactive desorption and low diffusion barriers could affect the results of chemical modeling. Results. All gas-grain chemical models based on static physics cannot fit the observations, except for the high abundances of CH3NH2 and C2H5CN in some cases. The simulations based on evolving physical conditions can fit six COMs when T ~ 30−60 K in the warm-up phase, but the best-fit temperature is still higher than the observed dust temperature of 20 K. The best agreement between the simulations and all seven observed COMs at a lower temperature T ~ 27 K is achieved by considering a short-duration ≈102 yr X-ray burst with ζCR = 1.3 × 10−13 s−1 at the early stage of the warm-up phase when it still has a temperature of 20 K. The reactive desorption is the key mechanism for producing these COMs and inducing the low abundances of CH3OCH3 and C2H5CN. Conclusions. We conclude that the evolution of the extended region around Sgr B2 may have begun with a cold, T ≤ 10 K phase followed by a warm-up phase. When its temperature reached about T ~ 20 K, an X-ray flare from the Galactic black hole Sgr A* with a short duration of no more than 100 yr was acquired, affecting strongly the Sgr B2 chemistry. The observed COMs in Sgr B2 are able to retain their observed abundances only several hundred years after such a flare, which could imply that such short-term X-rays flares occur relatively often, likely associated with the accretion activity of the Sgr A* source.


2019 ◽  
Vol 3 (10) ◽  
pp. 2138-2157 ◽  
Author(s):  
Guillermo M. Muñoz Caro ◽  
Angela Ciaravella ◽  
Antonio Jiménez-Escobar ◽  
Cesare Cecchi-Pestellini ◽  
Cristóbal González-Díaz ◽  
...  

2020 ◽  
Vol 117 (28) ◽  
pp. 16149-16153
Author(s):  
Angela Ciaravella ◽  
Guillermo M. Muñoz Caro ◽  
Antonio Jiménez-Escobar ◽  
Cesare Cecchi-Pestellini ◽  
Li-Chieh Hsiao ◽  
...  

The Atacama Large Millimeter Array has allowed a detailed observation of molecules in protoplanetary disks, which can evolve toward solar systems like our own. While CO,CO2, HCO, andH2COare often abundant species in the cold zones of the disk,CH3OHorCH3CNare only found in a few regions, and more-complex organic molecules are not observed. We simulate, experimentally, ice processing in disks under realistic conditions, that is, layered ices irradiated by soft X-rays. X-ray emission from young solar-type stars is thousands of times brighter than that of today’s sun. The ice mantle is composed of aH2O:CH4:NH3mixture, covered by a layer made ofCH3OHand CO. The photoproducts found desorbing from both ice layers to the gas phase during the irradiation converge with those detected in higher abundances in the gas phase of protoplanetary disks, providing important insights on the nonthermal processes that drive the chemistry in these objects.


Author(s):  
W. W. Barker ◽  
W. E. Rigsby ◽  
V. J. Hurst ◽  
W. J. Humphreys

Experimental clay mineral-organic molecule complexes long have been known and some of them have been extensively studied by X-ray diffraction methods. The organic molecules are adsorbed onto the surfaces of the clay minerals, or intercalated between the silicate layers. Natural organo-clays also are widely recognized but generally have not been well characterized. Widely used techniques for clay mineral identification involve treatment of the sample with H2 O2 or other oxidant to destroy any associated organics. This generally simplifies and intensifies the XRD pattern of the clay residue, but helps little with the characterization of the original organoclay. Adequate techniques for the direct observation of synthetic and naturally occurring organoclays are yet to be developed.


2020 ◽  
Author(s):  
Sukdev Bag ◽  
Sadhan Jana ◽  
Sukumar Pradhan ◽  
Suman Bhowmick ◽  
Nupur Goswami ◽  
...  

<p>Despite the widespread applications of C–H functionalization, controlling site selectivity remains a significant challenge. Covalently attached directing group (DG) served as an ancillary ligand to ensure proximal <i>ortho</i>-, distal <i>meta</i>- and <i>para</i>-C-H functionalization over the last two decades. These covalently linked DGs necessitate two extra steps for a single C–H functionalization: introduction of DG prior to C–H activation and removal of DG post-functionalization. We introduce here a transient directing group for distal C(<i>sp<sup>2</sup></i>)-H functionalization <i>via</i> reversible imine formation. By overruling facile proximal C-H bond activation by imine-<i>N</i> atom, a suitably designed pyrimidine-based transient directing group (TDG) successfully delivered selective distal C-C bond formation. Application of this transient directing group strategy for streamlining the synthesis of complex organic molecules without any necessary pre-functionalization at the distal position has been explored.</p>


Organics ◽  
2021 ◽  
Vol 2 (2) ◽  
pp. 107-117
Author(s):  
Mattia Forchetta ◽  
Valeria Conte ◽  
Giulia Fiorani ◽  
Pierluca Galloni ◽  
Federica Sabuzi

Owing to the attractiveness of organic phosphonic acids and esters in the pharmacological field and in the functionalization of conductive metal-oxides, the research of effective synthetic protocols is pivotal. Among the others, ω-bromoalkylphosphonates are gaining particular attention because they are useful building blocks for the tailored functionalization of complex organic molecules. Hence, in this work, the optimization of Michaelis–Arbuzov reaction conditions for ω-bromoalkylphosphonates has been performed, to improve process sustainability while maintaining good yields. Synthesized ω-bromoalkylphosphonates have been successfully adopted for the synthesis of new KuQuinone phosphonate esters and, by hydrolysis, phosphonic acid KuQuinone derivatives have been obtained for the first time. Considering the high affinity with metal-oxides, KuQuinones bearing phosphonic acid terminal groups are promising candidates for biomedical and photo(electro)chemical applications.


2021 ◽  
Vol 9 (1) ◽  
pp. 163
Author(s):  
Jeanine Rismondo ◽  
Lisa Maria Schulz

ATP-binding cassette (ABC) transporters are usually involved in the translocation of their cognate substrates, which is driven by ATP hydrolysis. Typically, these transporters are required for the import or export of a wide range of substrates such as sugars, ions and complex organic molecules. ABC exporters can also be involved in the export of toxic compounds such as antibiotics. However, recent studies revealed alternative detoxification mechanisms of ABC transporters. For instance, the ABC transporter BceAB of Bacillus subtilis seems to confer resistance to bacitracin via target protection. In addition, several transporters with functions other than substrate export or import have been identified in the past. Here, we provide an overview of recent findings on ABC transporters of the Gram-positive organisms B. subtilis and Listeria monocytogenes with transport or regulatory functions affecting antibiotic resistance, cell wall biosynthesis, cell division and sporulation.


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