Organic matter content controls the N and P degradation process on biogeochemical interfaces: A micro-ecosystem scale study based on SoilChips-XPS-Zymography integrated technique in paddy soils

Author(s):  
Liang Wei

<p>The biogeochemical interfaces are hotspots for organic matter (OM) transformation. However, direct and continuouxiacis tracing of OM transformations and N and P degradation processes are lacking due to the heterogeneous and opaque nature of soil microenvironment. To investigate these processes, a new soil microarray technology (SoilChips) was developed and used. Homogeneous 2-mm-diameter SoilChips were constructed by depositing a dispersed paddy soils with high and low soil organic carbon (SOC) content. A horizon suspension on a patterned glass. Dissolved organic matter from the original soil was added on the SoilChips to mimic biogeochemical processes on interfaces. The chemical composition of biogeochemical interfaces were evaluated via X-ray photoelectron spectroscopy (XPS) and the two-dimensional distribution of enzyme activities in SoilChips were evaluated by zymography. Over 30 days, soil with high SOC content increases microbial nutrition (N and P) requirements than soil with low SOC evidenced by higher hotspots of β-1,4-N-acetaminophen glucosidase, and acid phosphomonoesterases and higher 16S rRNA gene copies. The degree of humification in dissolved organic matter (DOM) was higher and the bioavailability of DOM was poorer in soil with high SOC than soil with low SOC. The poorest bioavailability of DOM was detected at the end of incubation in soil with high SOC. Molecular modeling of OM composition showed that low SOC mainly facilitated the microbial production of glucans but high SOC mainly facilitated the microbial production of proteins. We demonstrated that SOC content or DOM availability for microorganisms modifies the specific OM molecular processing and N and P degradation processes, thereby providing a direct insight into biogeochemical transformation of OM at micro-scale.</p>

2001 ◽  
Vol 43 (2) ◽  
pp. 187-196 ◽  
Author(s):  
S.-Z. Lee ◽  
L. Chang ◽  
C.-M. Chen ◽  
Y. I. Tsai ◽  
M.-C. Liu

The metal adsorption characteristics for fifteen Taiwan soils by Hg(II), were evaluated using pH as the major variable. The soil samples were thoroughly characterized for their physical chemical properties and composition, particularly organic matter and metal oxides. The adsorption of Hg(II) increased with increasing pH between pH 2.5 and 5.5, whereas the adsorption significantly decreased above around pH 5.5. Below pH 5.5, greater adsorption was found for soils with a higher organic matter content at constant pH and metal concentration. To better understand the mechanism of adsorption, the experimental results for Hg (II) were tested in a partition coefficient model to relate the adsorption of the Hg(II) by the different soils with soil components: organic matter, iron oxide, aluminium oxide and manganese oxide. This model was not successful when applied to measurements at the differing natural soil pHs because of the importance of pH. At pH greater than 5.5 the model fails because of the complexation of Hg by the dissolved organic matter. However, partition coefficients obtained from experimental data were highly correlated with those calculated for a partition coefficient between mercury and organic matter alone at lower pH. Normalization of the partition coefficients, Kd, for the organic matter content of the soils, Kom, greatly improved the correlation between the partition coefficient and pH under pH 5.5 (R2 increased from 0.484 to 0.716). This suggests that the surficial adsorption sites are principally due to organic matter for pH less than 5.5. For the 24-hour equilibration period employed, diffusion of Hg through this superficial organic matter coating to underlying sorptive materials, including metal oxides, is not important in the partitioning of Hg. At pH above 5, a decrease of mercury adsorption with increasing solution pH was also found. This result may be explained in part by the complexation of mercury by soil dissolved organic matter whose concentration increased with increasing pH.


Author(s):  
Ocampo-Guevara Jhon-Alexander ◽  
Vega Espinoz Johana Jazmín ◽  
Rivera González Johanna Rivera ◽  
Carlos Jacome

Agribusiness is one of the areas with the greatest impact, which, due to the processes involved within this area, generates waste that, given its composition, is used in optimal materials to be used for degradation methods in the production of composting, different microorganisms such as Pseudomonas, Bacillus, Aspergillus help in the decomposition of waste from agribusiness, the metabolic activity of these microorganisms allows the degradation of animal and plant tissues such as cellulose, starch, pectin, proteins, agar that intervene in nitrification and nitrogen fixation processes, for the degradation process it is necessary to carry out in composting beds of organic waste isolated with strains of the rhizosphere from the natural forest of CIPCA the strains use the dimensions of 4 x 1 x 1 giving a city layer of 4𝑚3 or about 640 kg of organic rough which are covered with geo mucosa, surrounded by gutters to collect leachate two produced by the effect of degradation, this process of degradation of organic matter allows to obtain a product with characteristics such as earthy odor, texture and uniform structure, where a pH close to neutral was registered in the control beds, gradually increasing from that moment with slightly alkaline values where it does not present characteristics of the initial organic matter, reducing the volume by 35%, for this the objective is to maintain Controller of certain parameters of temperature, humidity, pH, compost ratio and organic matter content.


2021 ◽  
Author(s):  
Natalia Shulga ◽  
Sergej Abramov ◽  
Sergej Gavrilov ◽  
Konstantin Ryazantsev

<p>This work is based on ferromanganese nodules, crusts and underlying sediments collected from the different parts of the Kara Sea shelf (Arctic). The geochemistry, morphology and organic matter content of nodules, crusts and sediments were determined with ICP-MS, SEM-EDS and GC/MS. The associated microbial communities were identified with 16S rRNA (gene) sequencing. Nodules from the Kara Sea shelf significantly differ from their more common abyssal analogues. These shelf nodules have an irregular tabular morphology and relatively low abundances of Mn (up to 19 wt.%), Fe (up to 24 wt.%), other trace metals and the REYs. The Kara Sea nodules show concentric layering that is also typical of deep-sea diagenetic nodules. Samples subdivided into two groups: Mn-rich (Mn/Fe = 0.35 on av.) and Fe-rich (Mn/Fe = 1.65 on av.). The negative Ce anomaly suggests a diagenetic origin of the nodules and crusts. The input of organic matter to the ore deposits in the study area has three main sources (according to n-alkane composition): 1) marine (planctonogenic); 2) low-transformed terrestrial organic matter derived from river run-off; 3) microbial-derived source. Microbial communities of nodules and crusts are substantially different from benthic microbial communities in sediments. They dominated by taxa involved in N cycle, particularly responsible for denitrification (<em>Cyclobacteriaceae</em> and <em>Kiloniellaceae</em>), nitrification (“<em>Candidatus Nitrosopumilus</em>” and <em>Nitrosomonas</em>), comammox (<em>Nitrospira</em>) and anammox (<em>Nitrosococcaceae</em>) [1]. Dissimilatory Fe(III)- and Mn(IV)-reducing Geopsychrobacter was identified in Fe-rich ore samples. This taxon can be involved in Fe(III)- and Mn(IV)-dependent anaerobic oxidation of methane [2]. In contrast, microbial community of underlying sediments dominated by sulfate-reducing bacteria (SRB). Some of the identified SRB (e.g. <em>Desulfobulbaceae</em> and <em>Desulfosarcinaceae</em>) are able to form syntrophic associations with anaerobic methanotrophic archaea [3]. Identified n-alkanes can be oxidized by <em>Anaerolineaceae</em> growing in syntrophic association with methanogens. Furthermore, we revealed that manganese nodules and crusts can be used potentially as important electron acceptors for oxidation of organic compounds by <em>Geopsychrobacter</em>, <em>Desulfuromonadales</em> and <em>Colwellia</em>. Applied multi-disciplinary approach to the study of the Fe-Mn nodules and crusts will help to determine their contribution in formation of unique biogeochemical environments in the Kara Sea.</p><p>This work was supported by the Russian Science Foundation (grant 19-77-00107).</p>


Sign in / Sign up

Export Citation Format

Share Document