Detection of porcine enteric viruses (Kobuvirus, Mamastrovirus and Sapelovirus) in domestic pigs in Corsica, France

Many enteric viruses are found in pig farms around the world and can cause death of animals or important production losses for breeders. Among the wide spectrum of enteric viral species, porcine Sapelovirus (PSV), porcine Kobuvirus (PKoV) and porcine Astrovirus (PAstV) are frequently found in pig feces. In this study we investigated sixteen pig farms in Corsica, France, to evaluate the circulation of three enteric viruses (PKoV, PAstV-1 and PSV). In addition to the three viruses studied by RT–qPCR (908 pig feces samples), 26 stool samples were tested using the Next Generation Sequencing method (NGS). Our results showed viral RNA detection rates (i) of 62.0% [58.7–65.1] (n = 563/908) for PSV, (ii) of 44.8% [41.5–48.1] (n = 407/908) for PKoV and (iii) of 8.6% [6.8–10.6] (n = 78/908) for PAstV-1. Significant differences were observed for all three viruses according to age (P-value = 2.4e–13 for PAstV-1; 2.4e–12 for PKoV and 0.005 for PSV). The type of breeding was significantly associated with RNA detection only for PAstV-1 (P-value = 9.6e–6). Among the 26 samples tested with NGS method, consensus sequences corresponding to 10 different species of virus were detected. This study provides first insight on the presence of three common porcine enteric viruses in France. We also showed that they are frequently encountered in pigs born and bred in Corsica, which demonstrates endemic local circulation.

Intra-seasonal variation of surface air temperature in Nepal Himalayas

Intra-seasonal variation of surface air temperature observed by the automatic weather station at Syangpoche in Khumbu region, Nepal Himalayas, is analyzed. In the monsoon season, temperature was nearly constant with large decrease in insolation due to monsoon clouds. On the other hand, large intra-seasonal variation existed in the winter with increase in temperature associated with passing synoptic scale high-pressure system which disturb local circulation pattern as well as decrease in temperature due to the nighttime strong radiative cooling under the condition of snow covers. Monsoon clouds and deep valley system caused unique surface temperature variation.

Consideration and Application of Evaluation Indicators of Regional Circular and Ecological Sphere (CES) for the Utilization of Woody Biomass

The “Regional Circular and Ecological Sphere” takes advantage of the SDGs’ concept of integrated solutions to numerous concerns, complementing and supporting resources based on the region’s features while maximizing the utilization of local resources. This research makes a comprehensive evaluation of the three aspects of the environment, economy, and society. First, formulate the evaluation indicators of the regional circulation symbiosis zone. Then, choose the cutting conditions of trees according to geographical factors, use the thinning forecasting system and forest GIS data to evaluate the supply potential of thinned wood in the area, and calculate the heat and power generation of wood biomass. According to the above analysis and calculation, 12,000 tons of unused wood chips can be supplied per year for 36 years from 2016 to 2051. From the economic point of view, the purchase of wood chips of 146 million yen due to the local circulation of wood fuel is expected to save about 50 million yen in intermediate input. And it is estimated that if 12,000 tons of unused wood chips can be supplied in the city per year, and about 98.4 million yen can be saved annually. Finally, from a social perspective point of view, biomass power generation of unused thinned timber using materials worth about 146 million yen is expected to create about 20 jobs.

Distribution of Gymnodinium catenatum Graham cysts and its relation to harmful algae blooms in the northern Gulf of California

Germination of cysts serves as inoculum for the proliferation of some dinoflagellates, and cyst abundance in sediments represents crucial information to understand and possibly predict Harmful Algae Blooms (HABs). Cyst distribution is related to the physical characteristics of the sediments and the hydrodynamics (circulation) of a particular region. In the northern Gulf of California (nGC) several Gymnodinium catenatum HABs have been recorded. However, the presence of resting cysts and the effect of hydrodynamics on their distribution in the nGC have not been investigated. This study evaluated cyst abundance, distribution and their relation to local circulation in surface sediments during two periods that coincided with a non-bloom year condition (July 2016) and after a major HAB registered in the nGC that occurred in January 2017. Also, a numerical ocean model was implemented to characterize the transport and relocation of cysts and sediments in the region. Gymnodinium catenatum cysts were heterogeneously distributed with some areas of high accumulation (as high as 158 cyst g−1, and 27% of total cyst registered). Cysts seemed to be transported in an eastward direction after deposition and accumulated in an extensive area that probably is the seedbed responsible for the initiation of HABs in the region. The nGC is a retention area of cysts (and sediments) that permit the formation of seedbeds that could be important for G. catenatum HAB development. Our results provide key information to understand G. catenatum ecology and specifically, to understand the geographic and temporal appearance of HABs in the nGC.

Simulation of daily variation of precipitation during anomalously-wet dry season event over the western Maritime Continent

Local seas play a significant role in causing anomalously wet of the dry season over the Indonesia Maritime Continent (10°S-8°N, 95-145°E). As a result, modeling the anomalously-wet dry season over Indonesia lead challenges due to several subregional processes over local seas could not be captured well in the regional climate model. This study explores subregions processes of sea-air interaction over the western Maritime Continent by simulating diurnal precipitation using Cubic Conformal Atmospheric Model (CCAM) with a spatial resolution of 32 km during the anomalously-wet dry season periods during May-to-September (MJJAS) 2020. The simulated results were confirmed by precipitation data from Tropical Rainfall Measuring Mission (TRMM) satellite observation. The results show anomalous circulation patterns induce anomalous regional precipitation over western MC is induced by anomalous circulation patterns over four keys of seas subregion, i.e., Indian Ocean, South China Sea, southern Sumatra (Lampung and Sunda strait), and the Java Sea. Furthermore, the anomalous circulation also modulates anomalous local circulation and enhances surface water vapor by an increased surface latent heat flux.

Implementation of the Unified Representation of Deep Moist Convection in the CWBGFS

This study implements the unified parameterization (UP) in the Central Weather Bureau Global Forecast System (CWBGFS) based on the relaxed Arakawa–Schubert scheme (RAS) at a horizontal resolution of 15 km. The new cumulus parameterization that incorporates the UP framework is called URAS. The UP generalizes the representation of moist convection between the parameterized and the explicitly resolved processes according to the process-dependent convective updraft fraction (σ). Short-term hindcasts are performed to investigate the impacts of the UP on the simulated precipitation variability and organized convective systems over the Maritime Continent when multiple scales of convection occurred. The result shows that σ is generally larger when convective systems develop, which adaptively reduces the parameterized convection and increases the spatial variation of moisture. In the URAS experiment, the moisture hotspots within organized convective systems contribute to the enhanced local circulation and the more significant variability of precipitation. Consequently, the URAS has a more realistic precipitation spectrum, an improved relationship between the maximum precipitation and the horizontal scale of the convective systems, and an improved column water vapor–precipitation relationship.

Impacts of Projected Urban Expansion on Rainfall and Temperature during Rainy Season in the Middle-Eastern Region in Tanzania

Future changes of land use and land cover (LULC) due to urbanization can cause variations in the frequency and severity of extreme weather events, affecting local climate and potentially worsening impact of such events. This work examines the local climatic impacts associated with projected urban expansion through simulations of rainfall and temperature over the rapidly growing city of the middle-eastern region in Tanzania. Simulations were conducted using a mesoscale Weather Research and Forecasting (WRF) model for a period of 10 days during the rainfall season in April 2018. The Global Forecasting System data of 0.25° resolution was used to simulate the WRF model in two-way nested domains at resolutions of 12 km and 4 km correspondingly. Urban and built-up areas under the current state, low urbanization (30%), and high urbanization (99%) scenarios were taken into account as LULC categories. As the urbanized area increased, daily mean, maximum and minimum air temperatures, as well as precipitation increased. Local circulation affected the spatial irregularities of air temperature and precipitation. Results imply that urbanization can amplify the impacts of future climate changes dramatically. These results can be applicable to the city planning to minimize the adverse effect of urbanization on temperature and precipitation.

A local-to-large scale view of Maritime Continent rainfall: control by ENSO, MJO and equatorial waves

The canonical view of the Maritime Continent (MC) diurnal cycle is deep convection occurring over land during the afternoon and evening, tending to propagate offshore overnight. However, there is considerable day-to-day variability in the convection, and the mechanism of the offshore propagation is not well understood. We test the hypothesis that large-scale drivers such as ENSO, the MJO and equatorial waves, through their modification of the local circulation, can modify the direction or strength of the propagation, or prevent the deep convection from triggering in the first place. Taking a local-to-large scale approach we use in situ observations, satellite data and reanalyses for five MC coastal regions, and show that the occurrence of the diurnal convection and its offshore propagation is closely tied to coastal wind regimes we define using the k-means cluster algorithm. Strong prevailing onshore winds are associated with a suppressed diurnal cycle of precipitation; while prevailing offshore winds are associated with an active diurnal cycle, offshore propagation of convection and a greater risk of extreme rainfall. ENSO, the MJO, equatorial Rossby waves and westward mixed Rossby-gravity waves have varying levels of control over which coastal wind regime occurs, and therefore on precipitation, depending on the MC coastline in question. The large-scale drivers associated with dry and wet regimes are summarised for each location as a reference for forecasters.

Etiology, Diagnosis and Management of Acute Compartment Syndrome: A Simple Review

The study aimed to summarize the updated evidence regards, Etiology, Diagnosis and Management of Acute compartment syndrome. Acute compartment syndrome (ACS) is a condition in which pressure builds up inside a closed osteofascial compartment, impairing local circulation. Early diagnosis and treatment are credited with the best outcomes following Acute Compartment Syndrome. The severity of compartment syndrome varies from mild to severe. Fasciotomies should be performed very soon if the patient have acute compartment syndrome. The treatment of late compartment syndrome (delayed or missing diagnosis) is more problematic. Long duration of acute compartment syndrome without treatment can cause irreversible damage that’s why early intervention is a must, non-operative measurement is preferred if possible, to prevent any surgical complications, however if surgery is needed it must be performed with Two-incision fasciotomy being the most used method.

Intensification of Loop Current Frontal Eddies and their Interactions with the Loop Current and Surrounding Flow

Loop Current Frontal Eddies (LCFEs) are cold-core vortices located in the vicinity of the Loop Current (LC) and are known to intensify and play an essential role in the LC shedding. The amplification of the LCFEs also affects the local circulation. During the 2010 Deepwater Horizon oil spill, part of the oil was entrained around and inside an intensified LCFE. The goal of this research is to characterize the LCFE intensification and understand its effects on the LC and surrounding flow. Firstly, the LC-LCFE interaction was investigated using altimetry and a mooring array. The intensification of the observed LCFEs shows similar characteristics over time, independent of their location: a steep increase in kinetic energy, a corresponding decrease in SSH, and an increase in size. LCFE intensification is dependent on the distance from the LC front. As the LCFE grows, the flow at the interface with the LC becomes stronger and deeper, and the horizontal density gradient between the features increases. Further intensification of the LC front and the LCFEs is suggested to be driven by the advection (nonlinear) term and the pressure-gradient (linear) term in the momentum budget. Secondly, the ageostrophy of the LC meanders during LCFE intensification is assessed using HYCOM velocity and geostrophic velocity from altimetry. The results indicate that during strong meandering, especially before and during LC shedding and in the presence of frontal eddies, the centrifugal force becomes as important as the Coriolis and the pressure-gradient forces, i.e., the LC meanders are in gradient-wind balance. Finally, the ability of LCFEs to transport particles without exchange with the exterior (i.e., material coherence) is investigated. The results show that the frontal eddies can remain coherent for up to 20 days at the surface and up to 25 days at deeper layers. Particles inside the frontal eddies were tracked backward in time and showed that the material coherence of the eddies builds up from Gulf water and can drive cross-shelf exchange of particles, water properties, and nutrients.