Biology and bulb production of Eleutherine bulbosa (Iridaceae), a native species from Borneo, Indonesia

Eleutherine bulbosa is a known ornamental plant of the Iris family, which originated from Central Borneo, Indonesia. The bulbs of E. bulbosa have long been used as a medicinal source by the local people of Borneo. Despite its known medicinal and other values, studies on the morphology and efficiency in bulb production of this species are limited. The aims of our study are to examine the vegetative and reproductive morphology of E. bulbosa, and to determine the effect of various dosages of NPK fertilizer on flowering and bulb production. The plants were grown in pots using potting mix consists of equal volume of burnt rice hulls, cocopeat, and organic manures (1:1:1). Our study showed that E. bulbosa has a cymose rhipidium inflorescence with 25-50 mm long peduncles, have 3-4 umbel on the secondary axis, each consists of 10-12 florets that opens in turn every day. Florets are 20-30 mm long, 20 mm in diameter, 10-15 mm pedicels, and short-lived. The perianth is white, about 25 mm wide with yellow anthers and stigma. Fruits were not formed during the duration of the study. NPK fertilizer application at the lowest dose of 1 g per pot had promoted earlier shoot emergence and vegetative growth, including plant height, leaf number, leaf size, number of tillers, and bulb production compared to control (no fertilizer). Application of fertilizer at 1 and 2 g per plant significantly promoted earlier flowering, whereas application at 3 g per plant delayed and reduced the proportion of flowering plants. The results of this study can aid in taxonomic identification and efficient cultivation of this plant for uses as potted flowering ornamentals or bulb production for different purposes. Higher cultivation and reduced wild harvesting can result in the conservation of this species.

Kap-β2/Transportin mediates β-catenin nuclear transport in Wnt signaling

Wnt signaling is essential for many aspects of embryonic development including the formation of the primary embryonic axis. In addition, excessive Wnt signaling drives multiple diseases including cancer highlighting its importance for disease pathogenesis. β-catenin is a key effector in this pathway that translocates into the nucleus and activates Wnt responsive genes. However, due to our lack of understanding of β-catenin nuclear transport, therapeutic modulation of Wnt signaling has been challenging. Here, we took an unconventional approach to address this long-standing question by exploiting a heterologous model system, the budding yeast Saccharomyces cerevisiae, which contains a conserved nuclear transport machinery. In contrast to prior work, we demonstrate that β-catenin accumulates in the nucleus in a Ran dependent manner, suggesting the use of a nuclear transport receptor (NTR). Indeed, a systematic and conditional inhibition of NTRs revealed that only Kap104, the orthologue of Kap- β2/Transportin-1 (TNPO1), was required for β-catenin nuclear import. We further demonstrate direct binding between TNPO1 and β-catenin that is mediated by a conserved amino acid sequence that resembles a PY NLS. Finally, using Xenopus secondary axis and TCF/LEF reporter assays, we demonstrate that our results in yeast can be directly translated to vertebrates. By elucidating the NLS in β-catenin and its cognate NTR, our study provides new therapeutic targets for a host of human diseases caused by excessive Wnt signaling. Indeed, we demonstrate that a small chimeric peptide designed to target TNPO1 can reduce Wnt signaling as a first step towards therapeutics.

Quasar main sequence: A line or a plane

Context. A quasar main sequence is widely believed to reveal itself through objects represented in a plane spanned by two parameters: the full width at half maximum (FWHM) of Hβ and the ratio of Fe II to Hβ equivalent width. This sequence is related to the application to quasar properties of principal component analysis (PCA), which reveals that the main axis of variance (eigenvector 1) is codirectional with a strong anticorrelation between these two measurements. Aims. We aim to determine whether the dominance of two eigenvectors, originally discovered over two decades ago, is replicated in newer high-quality quasar samples. If so, we aim to test whether a nonlinear approach is an improvement on the linear PCA method by finding two new parameters that represent a more accurate projection of the variances than the eigenvectors recovered from PCA. Methods. We selected quasars from the X-shooter archive and a major quasar catalog to build high-quality samples. These samples were tested with PCA. Results. We find that the new high-quality samples indeed have two dominant eigenvectors as originally discovered. Subsequently, we find that fitting a nonlinear decay curve to the main sequence allows a new plane spanned by linearly independent axes to be defined; this is based on the distance along the decay curve as the main axis and the distance of each quasar data point from the curve as the secondary axis, respectively. Conclusions. The results show that it is possible to define a new plane based on the quasar main sequence, which accounts for the majority of the variance. The most likely candidate for the new main axis is an anticorrelation with a black hole mass. In this case the secondary axis likely represents luminosity. However, given the results of previous studies, the inclination angle likely plays a role in the Hβ width.

DIVERSITY OF EDAPHIC FAUNA IN DIFFERENT SOIL OCCUPATION SYSTEMS

ABSTRACT Soil is the habitat for a number of living organisms that perform essential functions within the ecosystem; their functions and interactions are modified according to different ways of land occupation. Thus, the objective of this study was to evaluate the diversity of edaphic fauna in different soil occupation systems. The study was carried out in different soil occupation systems: millet, maize, soybean, eucalyptus, preserved cerrado, disturbed cerrado, and pasture, with 130 pitfall traps installed per treatment. Soil fauna organisms were identified at the level of large groups (orders and family), and then examined under the following biological diversity indices: Shannon index, Pielou index, average and total richness, and abundance. The highest abundance was found under millet growing conditions (9,974 individuals), and the lowest abundance values were found in soybean soil (222 individuals) and maize (824 individuals). Uniform distribution of groups in the area with soybean crops, due to the homogeneous management of the area, provided the highest biological index (H'=2.69). Principal component analysis (PCA) explained 50.9% of the data along the main axis and 34.6% of the data along the secondary axis. The different systems of soil occupation showed different abundance and diversity, demonstrating how soil occupation interferes with the dynamics of the invertebrate soil fauna.

Building a Body Shape Morphospace of Teleostean Fishes

We present a dataset that quantifies body shape in three dimensions across the teleost phylogeny. Built by a team of researchers measuring easy-to-identify, functionally relevant traits on specimens at the Smithsonian National Museum of Natural History it contains data on 16,609 specimens from 6144 species across 394 families. Using phylogenetic comparative methods to analyze the dataset we describe the teleostean body shape morphospace and identify families with extraordinary rates of morphological evolution. Using log shape ratios, our preferred method of body-size correction, revealed that fish width is the primary axis of morphological evolution across teleosts, describing a continuum from narrow-bodied laterally compressed flatfishes to wide-bodied dorsoventrally flattened anglerfishes. Elongation is the secondary axis of morphological variation and occurs within the more narrow-bodied forms. This result highlights the importance of collecting shape on three dimensions when working across teleosts. Our analyses also uncovered the fastest rates of shape evolution within a clade formed by notothenioids and scorpaeniforms, which primarily thrive in cold waters and/or have benthic habits, along with freshwater elephantfishes, which as their name suggests, have a novel head and body shape. This unprecedented dataset of teleostean body shapes will enable the investigation of the factors that regulate shape diversification. Biomechanical principles, which relate body shape to performance and ecology, are one promising avenue for future research.

Maternal Huluwa dictates the embryonic body axis through β-catenin in vertebrates

The vertebrate body is formed by cell movements and shape change during embryogenesis. It remains undetermined which maternal signals govern the formation of the dorsal organizer and the body axis. We found that maternal depletion of huluwa, a previously unnamed gene, causes loss of the dorsal organizer, the head, and the body axis in zebrafish and Xenopus embryos. Huluwa protein is found on the plasma membrane of blastomeres in the future dorsal region in early zebrafish blastulas. Huluwa has strong dorsalizing and secondary axis–inducing activities, which require β-catenin but can function independent of Wnt ligand/receptor signaling. Mechanistically, Huluwa binds to and promotes the tankyrase-mediated degradation of Axin. Therefore, maternal Huluwa is an essential determinant of the dorsal organizer and body axis in vertebrate embryos.

Functional gradients of the cerebellum

A central principle for understanding the cerebral cortex is that macroscale anatomy reflects a functional hierarchy from primary to transmodal processing. In contrast, the central axis of motor and nonmotor macroscale organization in the cerebellum remains unknown. Here we applied diffusion map embedding to resting-state data from the Human Connectome Project dataset (n = 1003), and show for the first time that cerebellar functional regions follow a gradual organization which progresses from primary (motor) to transmodal (DMN, task-unfocused) regions. A secondary axis extends from task-unfocused to task-focused processing. Further, these two principal gradients revealed novel functional properties of the well-established cerebellar double motor representation (lobules I-VI and VIII), and its relationship with the recently described triple nonmotor representation (lobules VI/Crus I, Crus II/VIIB, IX/X). Functional differences exist not only between the two motor but also between the three nonmotor representations, and second motor representation might share functional similarities with third nonmotor representation.

The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle

Jellyfish (medusae) are a distinctive life-cycle stage of medusozoan cnidarians. They are major marine predators, with integrated neurosensory, muscular and organ systems. The genetic foundations of this complex form are largely unknown. We report the draft genome of the hydrozoan jellyfish Clytia hemisphaerica and use multiple transcriptomes to determine gene use across life-cycle stages. Medusa, planula larva and polyp are each characterised by distinct transcriptome signatures reflecting abrupt life cycle transitions, and all deploy a mixture of phylogenetically old and new genes. Medusa specific transcription factors, including many with bilaterian orthologs, associate with diverse neurosensory structures. Compared to Clytia, the polyp-only hydrozoan Hydra has lost many of the medusa-expressed transcription factors, despite similar overall rates of gene content and sequence evolution. Absence of expression and gene loss among Clytia orthologs of genes patterning the anthozoan aboral pole, secondary axis and endomesoderm support simplification of planulae and polyps in Hydrozoa, including loss of bilateral symmetry. Consequently, although the polyp and planula are generally considered the ancestral cnidarian forms, in Clytia the medusa maximally deploys ancestral cnidarian–bilaterian transcription factor gene complexity.