Differentiation of Gastric Helicobacter Species Using MALDI-TOF Mass Spectrometry

Gastric helicobacters (Helicobacter (H.) pylori and non-H. pylori Helicobacter species (NHPHs)) colonize the stomach of humans and/or animals. Helicobacter species identification is essential since many of them are recognized as human and/or animal pathogens. Currently, Helicobacter species can only be differentiated using molecular methods. Differentiation between NHPHs using MALDI-TOF MS has not been described before, probably because these species are poorly represented in current MALDI-TOF MS databases. Therefore, we identified 93 gastric Helicobacter isolates of 10 different Helicobacter species using MALDI-TOF MS in order to establish a more elaborate Helicobacter reference database. While the MALDI Biotyper database was not able to correctly identify any of the isolates, the in-house database correctly identified all individual mass spectra and resulted in 82% correct species identification based on the two highest log score matches (with log scores ≥2). In addition, a dendrogram was constructed using all newly created main spectrum profiles. Nine main clusters were formed, with some phylogenetically closely related Helicobacter species clustering closely together and well-defined subclusters being observed in specific species. Current results suggest that MALDI-TOF MS allows rapid differentiation between gastric Helicobacter species, provided that an extensive database is at hand and variation due to growth conditions and agar-medium-related peaks are taken into account.

Partial migration in diadromous fishes drives the allocation of subsidies across the freshwater-marine ecotone

Migratory animals can act as cross-boundary subsidies sustaining ecosystem functioning, such as diadromous fishes that migrate between fresh water and seawater and carry nutrients and energy across the freshwater-marine ecotone. Frequency and timing of migration are however highly variable within and among populations. We hypothesized that in catadromous fishes (i.e., diadromous fishes that grow in freshwater and spawn in the sea, such as eels), the import of subsidies by migratory juveniles could outweigh the export of subsidies by adults due to skipped spawning migration. We used the diamond mullet Planiliza ordensis, as a model species, and determined life-history traits using a combination of length-to-age data, acoustic telemetry and otolith (fish ear stone) microchemistry. We used a mass balance approach to model individual mass acquisition and allocation, and extended our model to other life-history strategies. Our results showed high intra-population variation of migratory behaviour in P. ordensis, with few individuals migrating every year to spawn. We estimated that an individual P. ordensis acted as a net 42.6g biomass subsidy in fresh water, representing a retention of more than 50% of the juvenile mass at freshwater entry. Our model predicts that skipped spawning is likely to alter the allocation of subsidies in diadromous species, highlighting the important effects of individual variation in migratory behaviour on fluxes of energy and nutrient at ecosystem scales. We encourage future studies to consider how variation in migratory behaviour is likely to affect the direction and magnitude of biomass fluxes across ecotone boundaries.

Stability of Alum-Containing Paper under Alkaline Conditions

The present contribution evaluates the methods of degradation and stabilization of alum-containing paper with a focus on the alkaline environment achieved by deacidification procedures. In terms of reviewed subjects, the contribution focuses on alum-rosin sized paper, which is still used as a carrier of knowledge and information; however, it also mentions cellulose itself and other brands of paper. The contribution summarizes the results on the homogeneity of the distribution of alum and rosin in the paper mass and on the paper surface. It provides the knowledge gained in the field of alkaline hydrolysis and oxidation with special regard to transition metal species. It shows the values of alkaline reserves achieved in the main mass-deacidification processes. On the basis of the acquired knowledge, the contribution emphasizes the procedures of paper stabilization. Criteria of “increased mechanical permanence and lifetime prolongation” adopted to evaluate and compare the efficacy of individual mass-deacidification processes were applied and corresponding data are introduced. The contribution also draws attention to the existence of open issues in the area of paper degradation and stabilization.

Integrated Experimental and Theoretical Studies on an Electrochemical Immunosensor

Electrochemical immunosensors (EIs) integrate biorecognition molecules (e.g., antibodies) with redox enzymes (e.g., horseradish peroxidase) to combine the advantages of immunoassays (high sensitivity and selectivity) with those of electrochemical biosensors (quantitative electrical signal). However, the complex network of mass-transfer, catalysis, and electrochemical reaction steps that produce the electrical signal makes the design and optimization of EI systems challenging. This paper presents an integrated experimental and modeling framework to address this challenge. The framework includes (1) a mechanistic mathematical model that describes the rate of key mass-transfer and reaction steps; (2) a statistical-design-of-experiments study to optimize operating conditions and validate the mechanistic model; and (3) a novel dimensional analysis to assess the degree to which individual mass-transfer and reaction steps limit the EI’s signal amplitude and sensitivity. The validated mechanistic model was able to predict the effect of four independent variables (working electrode overpotential, pH, and concentrations of catechol and hydrogen peroxide) on the EI’s signal magnitude. The model was then used to calculate dimensionless groups, including Damkohler numbers, novel current-control coefficients, and sensitivity-control coefficients that indicated the extent to which the individual mass-transfer or reaction steps limited the EI’s signal amplitude and sensitivity.

Zooplankton as Indicator of the Ecological State of Protected Aquatic Ecosystems (Lake Borovoe, Burabay National Nature Park, Northern Kazakhstan)

The enrichment of the protected Borovoe Lake with nutrients has taken place within the last 100 years, from the moment the first resort was formed on its shores. The purpose of this study was to assess the current ecological state of Borovoe based on the structure of zooplankton. According to the chemical data, in the summer of 2019, the content of nutrients in the water was, relatively, not high; the content of heavy metals was very low. Twenty-seven species were found in zooplankton. The average abundance of zooplankton was 988.8 thousand ind./m3 with a biomass of 1.52 g/m3. Rotifera dominated. Cladocera sub-dominated. The Shannon index values were 2.31 bit/ind. and 2.57 bit/mg; the values of Clarke’s W-statistics and Δ-Shannon were negative. The abundance of zooplankton increased more than nine times, but the average individual mass of an organism decreased from 0.0112 to 0.0016 mg over the past decade. Despite the relatively low content of nutrients, the structure of zooplankton demonstrated that the nutritional load on Lake Borovoe is currently close to critical. Statistical mapping of the data and redundancy analysis (RDA) showed that the primary source of lake pollution is the village of Borovoe and sanatoriums located on the southeast and northwest coasts.

Astrometric orbits of spectral binary brown dwarfs – I. Massive T dwarf companions to 2M1059−21 and 2M0805+48

ABSTRACT Near-infrared spectroscopic surveys have uncovered a population of short-period, blended-light spectral binaries composed of low-mass stars and brown dwarfs. These systems are amenable to orbit determination and individual mass measurements via astrometric monitoring. Here, we present first results of a multiyear campaign to obtain high-precision absolute astrometry for spectral binaries using the Gemini-South and Gemini-North GMOS imagers. We measure the complete astrometric orbits for two systems: 2M0805+48 and 2M1059−21. Our astrometric orbit of 2M0805+48 is consistent with its 2-yr radial velocity orbit determined previously and we find a mass of $66^{+5}_{-14} M_\mathrm{Jup}$ for its T5.5 companion. For 2M1059−21, we find a 1.9-yr orbital period and a mass of $67^{+4}_{-5} M_\mathrm{Jup}$ for its T3.5 companion. We demonstrate that sub-milliarcsecond absolute astrometry can be obtained with both GMOS imagers and that this is an efficient avenue for confirming and characterizing ultracool binary systems.

‘Astray in a Dark Forest’? The Emotional Politics of Reconstruction Britain

Based on material generated by the British social investigative organisation Mass Observation between 1944 and 1946 this chapter maps some of the political work that emotion did in the immediate aftermath of the Second World War. It adapts cultural theorist Sara Ahmed’s question ‘What do emotions do?’ to a precise historical moment. It approaches emotion through the lens of social, as well as cultural, history by asking an additional question: ‘What did people do with emotion?’ It examines how the interlinked categories of feeling and experience were invoked by individual Mass Observers as ways of knowing a rapidly changing world and as grounds for participating in a dynamic public sphere. The chapter argues that a distinctive form of ‘emotional citizenship’ emerged out of the war; one which deployed feeling as a form of epistemology and experience as an evidential base.