Biofilm growth under continuous UVC irradiation: Quantitative effects of growth conditions and growth time on intensity response parameters

2021 ◽  
pp. 117747
Author(s):  
Hamed Torkzadeh ◽  
Ezra L. Cates
2021 ◽  
Vol 7 (4) ◽  
pp. 262
Author(s):  
Anuja Paudyal ◽  
Govindsamy Vediyappan

Candida auris is an emerging antifungal resistant human fungal pathogen increasingly reported in healthcare facilities. It persists in hospital environments, and on skin surfaces, and can form biofilms readily. Here, we investigated the cell surface proteins from C. auris biofilms grown in a synthetic sweat medium mimicking human skin conditions. Cell surface proteins from both biofilm and planktonic control cells were extracted with a buffer containing β-mercaptoethanol and resolved by 2-D gel electrophoresis. Some of the differentially expressed proteins were excised and identified by mass spectrometry. C. albicans orthologs Spe3p, Tdh3p, Sod2p, Ywp1p, and Mdh1p were overexpressed in biofilm cells when compared to the planktonic cells of C. auris. Interestingly, several proteins with zinc ion binding activity were detected. Nrg1p is a zinc-binding transcription factor that negatively regulates hyphal growth in C. albicans. C. auris does not produce true hypha under standard in vitro growth conditions, and the role of Nrg1p in C. auris is currently unknown. Western blot analyses of cell surface and cytosolic proteins of C. auris against anti-CalNrg1 antibody revealed the Nrg1p in both locations. Cell surface localization of Nrg1p in C. auris, an unexpected finding, was further confirmed by immunofluorescence microscopy. Nrg1p expression is uniform across all four clades of C. auris and is dependent on growth conditions. Taken together, the data indicate that C. auris produces several unique proteins during its biofilm growth, which may assist in the skin-colonizing lifestyle of the fungus during its pathogenesis.


2020 ◽  
Author(s):  
Federica Recupido ◽  
Maria Petala ◽  
Margaritis Kostoglou ◽  
Sergio Caserta ◽  
Stefano Guido ◽  
...  

<p>Biofilms prevention and removal are crucial in many industrial and medical applications. Their complex and cohesive structure provides resistance to cleaning even to strong disinfectants. A key factor for their behavior is the wetting properties of their surfaces.</p> <p>The main goal of this work is to study the wetting properties of biofilms produced by bacteria <em>Pseudomonas fluorescens</em>. Biofilms are obtained on glass coupons under well controlled flow conditions, using custom-made flow cell devices. Different nutrient concentration and shear flow conditions are investigated.</p> <p>Biofilm wetting properties are examined under imposed external body forces (forced wetting) through a specialized device, named Kerberos®. Kerberos® is capable of subjecting sessile droplets to varying tilting angles and centrifugal forces while monitoring the variation of the droplet shape in X, Y and Z-directions through three Wi-Fi cameras. Wetting experiments are carried out using water-based solution (dye solution) droplets on biofilm-coated glass coupons. In this work, spreading/sliding behaviour of droplets are investigated only on horizontal substrates (no tilting) under the action of centrifugal forces. Apart from wetting properties, biofilm growth kinetics and surface morphology at different nutrient and shear flow conditions are also assessed.</p> <p>Results show that, according to the different growth conditions, biofilms present different wetting properties. At lower nutrient concentration and shear flow conditions, spreading and sliding behaviour are similar to that observed in glass coupons in the absence of biofilm. At higher nutrient and shear flow conditions, spontaneous wicking of the biofilm occurs the moment of droplet deposition on the biofilm leading to irregular and jagged shapes of droplets, while on the contrary water droplets look like smooth spherical sections on pure glass. The spontaneous wicking affects the droplet initial shape and so the wetting behaviour during the subsequent rotation tests. In each examined condition, biofilms show hydrophilic properties.</p> <p> </p>


2018 ◽  
Author(s):  
Toma Marinov ◽  
Liang Yuchi ◽  
Dayo O. Adewole ◽  
D. Kacy Cullen ◽  
Reuben H. Kraft

AbstractMicro-Tissue Engineered Neural Networks (Micro-TENNs) are living three-dimensional constructs designed to replicate the neuroanatomy of white matter pathways in the brain, and are being developed as implantable microtissue for axon tract reconstruction or as anatomically-relevant in vitro experimental platforms. Micro-TENNs are composed of discrete neuronal aggregates connected by bundles of long-projecting axonal tracts within miniature tubular hydrogels. In order to help design and optimize micro-TENN performance, we have created a new computational model including geometric and functional properties. The model is built upon the three-dimensional diffusion equation and incorporates large-scale uni- and bi-directional growth that simulates realistic neuron morphologies. The model captures unique features of 3D axonal tract development that are not apparent in planar outgrowth, and may be insightful for how white matter pathways form during brain development. The processes of axonal outgrowth, branching, turning and aggregation/bundling from each neuron are described through functions built on concentration equations and growth time distributed across the growth segments. Once developed we conducted multiple parametric studies to explore the applicability of the method and conducted preliminary validation via comparisons to experimentally grown micro-TENNs for a range of growth conditions. Using this framework, this model can be applied to study micro-TENN growth processes and functional characteristics using spiking network or compartmental network modeling. This model may be applied to improve our understanding of axonal tract development and functionality, as well as to optimize the fabrication of implantable tissue engineered brain pathways for nervous system reconstruction and/or modulation.


2014 ◽  
Vol 70 (a1) ◽  
pp. C748-C748
Author(s):  
Ullrich Pietsch ◽  
Andreas Biermanns ◽  
Emmanouil Dimakis ◽  
Lutz Geelhaar ◽  
Anton Davydok ◽  
...  

The monolithic integration of III-V semiconductors with Si is the ideal way to combine the superior optoelectronic properties of the compound semiconductors with the mature Si technology. This integration can be realized by growing epitaxially dislocation-free III-V NWs on Si substrates either in the vapor-liquid-solid (VLS) or in the vapor-solid (VS) mode associated with the presence or absence, respectively, of group-III liquid droplets on the NW tips [1]. In this work, we investigate the correlation between the growth mode and the forming polytypes in InAs NWs grown on Si(111). The growth was performed in the molecular beam epitaxy chamber of beamline 11XU at Spring8 [2], while the structural dynamics was probed by in situ x-ray diffraction. Specifically, the time evolution of the formation of wurtzite (WZ) and zincblende (ZB) polytypes was monitored during the NW growth. Despite the As-rich growth conditions, a spontaneous build-up of liquid In on Si was found to be present in the nucleation phase, where the InAs nuclei mainly grow in the WZ phase with low number of stacking faults. Shortly after the nucleation, the liquid In is consumed by the excessive As, and the growth continues in the VS mode with an increasing density of stacking faults forming in the NW crystal. The time evolution of the liquid Indium signal (Fig. (a)) correlates well with the time evolution of wurzite growth rate (Fig (b)). The latter saturates at a time where the liquid indium disappers, i.e. where the VLS changes into the VS mode, whereas the zinc-blende polytypes grow almost continuous in both VLS and VS growth mode. The dynamics of stacking faults density was determined quantitatively by ex-situ X-ray diffraction measuring thestacking fault induced increase of the peak width of wurtzite reflections at InAs nanowire samples of different length ; i.e. growth time [3].


2001 ◽  
Vol 693 ◽  
Author(s):  
K. Scott ◽  
A. Butcher ◽  
Marie Wintrebert-Fouquet ◽  
Patrick P.–T. Chen ◽  
Trevor L. Tansley ◽  
...  

AbstractThe highest mobility nitrides ever grown were indium nitride polycrystalline thin films. The original reactive ion sputtering unit used to produce those films is still in existence and has been substantially upgraded. In this paper we describe some of the parameters that are important for high purity indium nitride growth, while providing the most recent results for films grown with the upgraded system. A long lag time (greater than 100 hours of growth time) has been observed before obtaining stable material properties for a given set of growth conditions.


2006 ◽  
Vol 527-529 ◽  
pp. 183-186 ◽  
Author(s):  
Jawad ul Hassan ◽  
Christer Hallin ◽  
Peder Bergman ◽  
Erik Janzén

Thick epitaxial layers of 4H-SiC both n- and p-type were grown using horizontal Hot- Wall CVD (HWCVD). No large difference in the carrier lifetime was observed for the layers grown on n- and p-type substrates. The carrier lifetime usually increases with the increasing thickness of the epilayer. To investigate if the growth conditions and material properties are changing during the longer growth time a sample was prepared with uniformly varying epilayer thickness from 20μm on one side to 110μm on other side. Results of optical and electrical measurements, the variation in background impurities and other deep levels are discussed. Furthermore, the properties of thick layers grown on on-axis substrates are presented.


Nanomaterials ◽  
2020 ◽  
Vol 10 (10) ◽  
pp. 1974 ◽  
Author(s):  
Manel López ◽  
Juan Luis Frieiro ◽  
Miquel Nuez-Martínez ◽  
Martí Pedemonte ◽  
Francisco Palacio ◽  
...  

In this paper, we investigated how different growth conditions (i.e., temperature, growth time, and composition) allows for trading off cost (i.e., In content) and performance of nanostructured indium tin oxide (ITO) for biosensing applications. Next, we compared the behavior of these functionalized nanostructured surfaces obtained in different growth conditions between each other and with a standard thin film as a reference, observing improvements in effective detection area up to two orders of magnitude. This enhanced the biosensor’s sensitivity, with higher detection level, better accuracy and higher reproducibility. Results show that below 150 °C, the growth of ITO over the substrate forms a homogenous layer without any kind of nanostructuration. In contrast, at temperatures higher than 150 °C, a two-phase temperature-dependent growth was observed. We concluded that (i) nanowire length grows exponentially with temperature (activation energy 356 meV) and leads to optimal conditions in terms of both electroactive surface area and sensitivity at around 300 °C, (ii) longer times of growth than 30 min lead to larger active areas and (iii) the In content in a nanostructured film can be reduced by 10%, obtaining performances equivalent to those found in commercial flat-film ITO electrodes. In summary, this work shows how to produce appropriate materials with optimized cost and performances for different applications in biosensing.


2007 ◽  
Vol 121-123 ◽  
pp. 153-158
Author(s):  
W.Z. Huang ◽  
X.B. Zhang ◽  
F.Z. Kong ◽  
Y. Li ◽  
D. Lu ◽  
...  

GNFs with fish-bone structure were first produced by a simple method. To optimize the growth conditions, different hydrogen treatment of the catalyst, different growth time and growth temperature, as well as different gas flow rate were employed. The effects of these growth conditions on the morphology and yield of GNFs were studied in details. It is found that fish-bone GNFs with high yield and high purity can be produced under the optimized conditions.


2005 ◽  
Vol 71 (5) ◽  
pp. 2663-2676 ◽  
Author(s):  
Alexandra Resch ◽  
Ralf Rosenstein ◽  
Christiane Nerz ◽  
Friedrich Götz

ABSTRACT It is well known that biofilm formation by pathogenic staphylococci on implanted medical devices leads to “chronic polymer-associated infections.” Bacteria in these biofilms are more resistant to antibiotics and the immune defense system than their planktonic counterparts, which suggests that the cells in a biofilm have altered metabolic activity. To determine which genes are up-regulated in Staphylococcus aureus biofilm cells, we carried out a comparative transcriptome analysis. Biofilm growth was simulated on dialysis membranes laid on agar plates. Staphylococci were cultivated planktonically in Erlenmeyer flasks with shaking. mRNA was isolated at five time points from cells grown under both conditions and used for hybridization with DNA microarrays. The gene expression patterns of several gene groups differed under the two growth conditions. In biofilm cells, the cell envelope appeared to be a very active compartment since genes encoding binding proteins, proteins involved in the synthesis of murein and glucosaminoglycan polysaccharide intercellular adhesin, and other enzymes involved in cell envelope synthesis and function were significantly up-regulated. In addition, evidence was obtained that formate fermentation, urease activity, the response to oxidative stress, and, as a consequence thereof, acid and ammonium production are up-regulated in a biofilm. These factors might contribute to survival, persistence, and growth in a biofilm environment. Interestingly, toxins and proteases were up-regulated under planktonic growth conditions. Physiological and biochemical tests for the up-regulation of urease, formate dehydrogenase, proteases, and the synthesis of staphyloxanthin confirmed the microarray data.


2016 ◽  
Vol 675-676 ◽  
pp. 53-56
Author(s):  
Supawadee Pokai ◽  
Puenisara Limnonthakul ◽  
Mati Horprathum ◽  
Sukon Kalasung ◽  
Pitak Eiamchai ◽  
...  

Zinc oxide (ZnO) nanorods (NRs) promise high potentials in several applications, such as photovoltaic device, thermoelectric device, sensor and solar cell. In this research, the vertical alignment of ZnO NRs was fabricated by hydrothermal method with various precursor concentrations and growth time on different seed layers (ZnO and Au), which deposited on silicon wafer substrate (100). The crystalline structure and morphology of ZnO NRs have been characterized by x-ray diffraction (XRD) and field emission scanning electron microscopy (FE-SEM) techniques, respectively. The x-ray diffraction pattern shows that the prepared samples have a strong preferred orientation (002) plane. FE-SEM images of the ZnO NRs, it found that the density and aspect ratio were strongly influenced by the seed layer and precursor concentration. In addition, the aspect ratio of ZnO NRs was increased with increasing growth time. This study provides a cost effective method for the fabrication of well aligned ZnO NRs for nano-electronic devices.


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