Circulation of Aichi virus genotype B strains in children with acute gastroenteritis in India

2011 ◽  
Vol 139 (11) ◽  
pp. 1687-1691 ◽  
Author(s):  
H. VERMA ◽  
S. D. CHITAMBAR ◽  
V. GOPALKRISHNA
Keyword(s):  
Acute Gastroenteritis ◽  
Health Problems ◽  
Aichi Virus ◽  
Western India ◽  
Age Group ◽  
Rt Pcr ◽  
Junction Region ◽  
Virus Genotype ◽  
Major Health ◽  
Stool Specimens

SUMMARYAcute gastroenteritis (AG) is considered as one of the major health problems affecting humans of all ages. A number of viruses have been recognized as important causes of this disease. Recently, Aichi virus has been shown to play an aetiological role in sporadic infections and outbreaks of AG. A study on surveillance of enteric viruses was conducted during 2004–2008 in three cities in Maharashtra state, western India. A total of 1240 stool specimens from children aged ⩽8 years hospitalized for AG were screened for the presence of Aichi virus by RT–PCR of the 3C–3D junction region followed by sequencing for the identification of genotype. Aichi virus was detected at a prevalence of 1·1% in the <5 years age group and characterized as genotype B. This is the first report on the circulation of Aichi virus genotype B in India.

scholarly journals Epidemiology and genetic diversity of human parechoviruses circulating among children hospitalised with acute gastroenteritis in Pune, Western India: a 5-years study

2017 ◽  
Vol 146 (1) ◽  
pp. 11-18 ◽  
Author(s):  
P. R. PATIL ◽  
N. N. GANORKAR ◽  
V. GOPALKRISHNA
Keyword(s):  
Genetic Diversity ◽  
Acute Gastroenteritis ◽  
Clinical Manifestations ◽  
Western India ◽  
Vp1 Gene ◽  
Rt Pcr ◽  
Chain Reaction ◽  
Predominant Genotype ◽  
Stool Specimens ◽  
Polymerase Chain

SUMMARYHuman parechoviruses (HPeVs) are known to cause various clinical manifestations including acute gastroenteritis. Although HPeV infections and their genotypes have been detected in human patients worldwide, no such reports are available from India to ascertain the association of HPeVs in acute gastroenteritis. The present study was conducted to determine the clinical features and genetic diversity of HPeVs detected in children hospitalised for acute gastroenteritis. Stool specimens (n= 979) collected from children aged ⩽5 years hospitalised for acute gastroenteritis in Pune, western India during January 2006–December 2010 were included. HPeV RNA was detected by reverse transcription-polymerase chain reaction (RT-PCR) (5′UTR) followed by genotyping using VP1 gene-based PCR and phylogenetic analysis. HPeV was detected in 13·9% (136/979) of the cases, co-infections with other enteric viruses were found in 43·4%. HPeV was more frequent in children ⩽1 year age with infections reported throughout the year. A total of 102/136 (75%) HPeV strains were genotyped, which comprised 13 different HPeV genotypes. Of these, HPeV1 was the most predominant genotype detected and phylogenetically clustered with the Harris strain which is rarely reported. The study documents circulation of heterogeneous HPeV genotypes. Two variant strains of HPeV4 and ‘RGD absent’ HPeV5 and 6 strains were also detected. This is the first report of HPeV with diversified genotypes identified in acute gastroenteritis patients from India.

Mixed viral infections causing acute gastroenteritis in children in a waterborne outbreak

2010 ◽  
Vol 138 (9) ◽  
pp. 1227-1234 ◽  
Author(s):  
S. RÄSÄNEN ◽  
S. LAPPALAINEN ◽  
S. KAIKKONEN ◽  
M. HÄMÄLÄINEN ◽  
M. SALMINEN ◽  
...  
Keyword(s):  
Campylobacter Jejuni ◽  
Acute Gastroenteritis ◽  
Viral Infections ◽  
Aichi Virus ◽  
Mixed Infections ◽  
Hospitalized Children ◽  
Point Scale ◽  
Viral Pathogens ◽  
Waterborne Outbreak ◽  
Stool Specimens

SUMMARYWe examined stool specimens for viral pathogens from 50 children referred to hospital due to acute gastroenteritis (AGE) resulting from consuming drinking water contaminated with sewage in a Finnish community using PCR methods. Rotavirus was detected in 33 (66%), human calicivirus in 31 (62%), and both in 40% of cases. Of the caliciviruses, 20/31 (65%) were noroviruses and 11 (35%) sapoviruses. Furthermore, Aichi virus was detected in 25 (50%), adenovirus in six (12%) and bocavirus in four (8%) cases.Campylobacter jejuniwas present in 20 (61%) andSalmonellain four (12%) of the 33 stools cultured for bacteria. On a 20-point scale median severity score of AGE in the 28 hospitalized children was 17; the severity was similar regardless of viruses detected. Bloody diarrhoea occurred only whenC. jejuniwas present. To conclude, massive exposure to several AGE viruses caused mixed infections and severe AGE regardless of the aetiological agents.

Evaluation of RIDA®GENE norovirus GI/GII real time RT-PCR using stool specimens collected from children and adults with acute gastroenteritis

2018 ◽  
Vol 104 ◽  
pp. 1-4 ◽  
Author(s):  
N. Kanwar ◽  
F. Hassan ◽  
L. Barclay ◽  
C. Langley ◽  
J. Vinjé ◽  
...  
Keyword(s):  
Real Time ◽  
Acute Gastroenteritis ◽  
Rt Pcr ◽  
Stool Specimens

Group B rotavirus infection in patients with acute gastroenteritis from India: 1994–1995 and 2004–2010

2012 ◽  
Vol 141 (5) ◽  
pp. 969-975 ◽  
Author(s):  
A. LAHON ◽  
N. H. MANIYA ◽  
G. U. TAMBE ◽  
P. R. CHINCHOLE ◽  
S. PURWAR ◽  
...  
Keyword(s):  
Acute Gastroenteritis ◽  
Detection Rate ◽  
Southern India ◽  
Western India ◽  
Rt Pcr ◽  
Rotavirus Infection ◽  
Adolescents And Adults ◽  
Group B ◽  
First Time

SUMMARYFaecal specimens collected from 2101 patients with acute gastroenteritis from three cities (Pune, Alappuzha, Belgaum) in India during 1994–1995 and 2004–2010 were tested for group B rotavirus (RVB) by amplification of theNSP2gene using RT–PCR. Seventy-five (3·6%) specimens were shown to contain RVB RNA. The positivity rate in Pune, Alappuzha and Belgaum was 4·1%, 7·3% and 4·1%, respectively, in the 2000s which was not significantly different from the detection rate in the 1990s in Pune (2·5%,P>0·05). RVB infections prevailed in adolescents and adults (62/1082, 5·7%) compared to children (13/1019, 1·3%,P<0·001) and were detected throughout the year. Phylogenetically, all strains clustered in an NSP2 lineage together with Indian-Bangladeshi RVB strains belonging to VP7 genotype G2. The study confirmed the occurrence of RVB infections in western India and reported for the first time circulation of RVB strains in southern India, suggesting that an increased awareness and monitoring for RVB infections is necessary in India.

scholarly journals Distribution of Rotavirus VP4 Genotypes and VP7 Serotypes among Nonhospitalized and Hospitalized Patients with Gastroenteritis and Patients with Nosocomially Acquired Gastroenteritis in Austria

2000 ◽  
Vol 38 (5) ◽  
pp. 1804-1806 ◽  
Author(s):  
M. Frühwirth ◽  
S. Brösl ◽  
H. Ellemunter ◽  
I. Moll-Schüler ◽  
A. Rohwedder ◽  
...  
Keyword(s):  
Immunosorbent Assay ◽  
Reverse Transcription ◽  
Nosocomial Infections ◽  
Acute Gastroenteritis ◽  
Enzyme Linked Immunosorbent Assay ◽  
Rotavirus Vaccine ◽  
Rt Pcr ◽  
Reverse Transcription Pcr ◽  
Potential Benefits ◽  
Stool Specimens

To assess the potential benefits of a reassortant tetravalent rotavirus vaccine, we investigated stool specimens from children in three different groups by reverse transcription-PCR (RT-PCR) for rotavirus G and P types: (i) children not hospitalized with community-acquired rotavirus-acute gastroenteritis (RV-AGE), (ii) children hospitalized for RV-AGE, and (iii) children with nosocomially acquired RV-AGE. From a total of 553 samples investigated, 335 were positive by enzyme-linked immunosorbent assay, of which 294 (88%) were positive by RT-PCR. Among the RT-PCR-positive samples, the predominant types were G1P[8] (84%), followed by G4P[8] (9%) and G3P[8] (2%). No differences between the three groups were observed, suggesting that community vaccination will diminish the most cost-relevant cases of hospitalizations and nosocomial infections.

scholarly journals Diagnostic Accuracy of Immunochromatographic Tests for the Detection of Norovirus in Stool Specimens: a Systematic Review and Meta-Analysis

2021 ◽  
Author(s):  
Seo Hee Yoon ◽  
Hye Rim Kim ◽  
Jong Gyun Ahn
Keyword(s):  
Systematic Review ◽  
Diagnostic Accuracy ◽  
Economic Burden ◽  
Acute Gastroenteritis ◽  
Meta Analysis ◽  
Age Groups ◽  
Major Health ◽  
Stool Specimens

Noroviruses are the leading cause of acute gastroenteritis in all age groups and constitute a major health and economic burden worldwide. This systematic review and meta-analysis aimed to determine the diagnostic accuracy of immunochromatographic tests (ICTs) for the detection of norovirus in stool specimens, which has not been performed previously.

Aichi virus infection in children with acute gastroenteritis in Finland

2009 ◽  
Vol 138 (8) ◽  
pp. 1166-1171 ◽  
Author(s):  
S. KAIKKONEN ◽  
S. RÄSÄNEN ◽  
M. RÄMET ◽  
T. VESIKARI
Keyword(s):  
Acute Gastroenteritis ◽  
Aichi Virus ◽  
Causative Role ◽  
Asian Countries ◽  
Efficacy Trial ◽  
Virus Genotypes ◽  
Stool Samples ◽  
Stool Specimens ◽  
Polymerase Chain

SUMMARYAichi virus has been proposed as a novel causative agent of acute gastroenteritis. In addition to several Asian countries, South America and Africa, Aichi virus has also recently been found in Europe. Our objective was to study the causative role of Aichi virus in children with acute gastroenteritis in Finland. We analysed 595 stool specimens from infants in an efficacy trial of rotavirus vaccine and 468 stool specimens from children in a hospital-based epidemiological and aetiological study of acute gastroenteritis. The screening was done by nested reverse transcription–polymerase chain reaction amplifying a 519-bp segment and a 223-bp segment in the 3CD junction region of non-structural proteins. Aichi virus was detected in five stool samples (0·5%), of which four were co-infections with other gastroenteritis viruses. Two Aichi virus genotypes, A and B, were found. Aichi virus appears to be rare in children with acute gastroenteritis in Finland.

Polymerase chain reaction amplification and typing of rotavirus in environmental samples

1995 ◽  
Vol 31 (5-6) ◽  
pp. 371-374 ◽  
Author(s):  
R. Gajardo ◽  
R. M. Pintó ◽  
A. Bosch
Keyword(s):  
Polymerase Chain Reaction ◽  
Environmental Samples ◽  
Polymerase Chain Reaction Amplification ◽  
Rt Pcr ◽  
Chain Reaction ◽  
Pcr Assay ◽  
Group A ◽  
Reaction Amplification ◽  
Stool Specimens ◽  
Polymerase Chain

A reverse transcription polymerase chain reaction (RT-PCR) assay is described that has been developed for the detection and serotyping of group A rotavirus in stool specimens and concentrated and non-concentrated sewage specimens.

scholarly journals The Role of Lifestyle, Eating Habits and Social Environment in the Prevention and Treatment of Type 2 Diabetes and Hypertension

Nutrients ◽  
2021 ◽  
Vol 13 (5) ◽  
pp. 1460
Author(s):  
Kalliopi Karatzi ◽  
Yannis Manios
Keyword(s):  
Type 2 Diabetes ◽  
Social Environment ◽  
Eating Habits ◽  
Health Problems ◽  
Major Health ◽  
The Past ◽  
Prevention And Treatment

Type 2 diabetes (T2DM) and hypertension are major health problems, with an undisputed growth burden in the past decades [...]

scholarly journals Human Astrovirus Outbreak in a Daycare Center and Propagation among Household Contacts

Viruses ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 1100
Author(s):  
Ignacio Parrón ◽  
Elsa Plasencia ◽  
Thais Cornejo-Sánchez ◽  
Mireia Jané ◽  
Cristina Pérez ◽  
...  
Keyword(s):  
Acute Gastroenteritis ◽  
Age Groups ◽  
Rt Pcr ◽  
Daycare Center ◽  
Infected People ◽  
Conditioning Factors ◽  
Household Contacts ◽  
Human Astrovirus ◽  
Asymptomatic Infections ◽  
Clinical Cases

We investigated an outbreak of acute gastroenteritis due to human astrovirus in a daycare center, describing the transmission mechanism, the most affected age groups, conditioning factors and the extent of the outbreak among household contacts of the daycare center attenders. Data were collected from persons exposed at the daycare center and their home contacts. Fecal samples from affected and non-affected daycare center attenders were analyzed for viruses causing acute gastroenteritis by RT-PCR. The percentage of households affected and the attack rates (AR) were calculated. The attack rates were compared using the rate ratio (RR) with 95% confidence intervals. Information was obtained from 245 people (76 attenders and 169 contacts) of whom 49 were clinical cases. Five HAstV-4, two HAstV-8 and three non-typable HAstV cases were identified (six from clinical cases and four from asymptomatic infected people). The global AR was 20% (41.2% in children aged < 2 years). Data were obtained from 67 households: 20 households of affected attenders and 47 of non-affected attendees. Household contacts of affected attenders had a higher AR (74.3%) than that of non-affected attendees (2.4%). We found asymptomatic infections amongst daycare attendees. The transmission of HAstV during the outbreak was not limited to the daycare center but extended to household contacts of both affected and non-affected attenders.

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