scholarly journals Three-Dimensional Optimal Spectral Extraction (TDOSE) from integral field spectroscopy

2019 ◽  
Vol 628 ◽  
pp. A91 ◽  
Author(s):  
K. B. Schmidt ◽  
L. Wisotzki ◽  
T. Urrutia ◽  
J. Kerutt ◽  
D. Krajnović ◽  
...  

The amount of integral field spectrograph (IFS) data has grown considerably over the last few decades. The demand for tools to analyze such data is therefore bigger now than ever. We present a flexible Python tool for Three-Dimensional Optimal Spectral Extraction (TDOSE) from IFS data cubes. TDOSE works on any three-dimensional data cube and bases the spectral extractions on morphological reference image models. By default, these models are generated and composed of multiple multivariate Gaussian components, but can also be constructed with independent modeling tools and be provided as input to TDOSE. In each wavelength layer of the IFS data cube, TDOSE simultaneously optimizes all sources in the morphological model to minimize the difference between the scaled model components and the IFS data. The flux optimization produces individual data cubes containing the scaled three-dimensional source models. This allows the efficient de-blending of flux in both the spatial and spectral dimensions of the IFS data cubes, and extraction of the corresponding one-dimensional spectra. TDOSE implicitly requires an assumption about the two-dimensional light distribution. We describe how the flexibility of TDOSE can be used to mitigate and correct for deviations from the input distribution. Furthermore, we present an example of how the three-dimensional source models generated by TDOSE can be used to improve two-dimensional maps of physical parameters like velocity, metallicity, or star formation rate when flux contamination is a problem. By extracting TDOSE spectra of ∼150 [OII] emitters from the MUSE-Wide survey we show that the median increase in line flux is ∼5% when using multi-component models as opposed to single-component models. However, the increase in recovered line emission in individual cases can be as much as 50%. Comparing the TDOSE model-based extractions of the MUSE-Wide [OII] emitters with aperture spectra, the TDOSE spectra provides a median flux (S/N) increase of 9% (14%). Hence, TDOSE spectra optimize the S/N while still being able to recover the total emitted flux.

2019 ◽  
Author(s):  
Arjen Koop ◽  
Frédérick Jaouën ◽  
Xavier Wadbled ◽  
Erwan Corbineau

Abstract An accurate prediction of the non-linear roll damping is required in order to calculate the resonant roll motion of moored FPSO’s. Traditionally, the roll damping is obtained with model tests using decays or forced roll oscillation tests. Calculation methods based on potential flow are not capable of predicting this hydrodynamic damping accurately as it originates from the viscous nature of the fluid and the complex vortical flow structures around a rolling vessel. In recent years Computational Fluid Dynamics (CFD) has advanced such that accurate predictions for the roll damping can be obtained. In this paper CFD is employed to predict the roll damping for a barge-type FPSO. The objectives of the paper are to investigate the capability and accuracy of CFD to determine roll damping of an FPSO and to investigate whether two-dimensional calculations can be used to estimate the roll damping of a three-dimensional FPSO geometry. To meet these objectives, extensive numerical sensitivity studies are carried out for a 2D hull section mimicking the midsection of the FPSO. The numerical uncertainty for the added mass and damping coefficients were found to be 0.5% and 2%, respectively. The influence of the turbulence model was found to be significant for the damping coefficient with differences up to 14%. The 2D CFD results are compared to results from two-dimensional model tests. The calculated roll damping using the k-ω SST 2003 turbulence model matches the value from the experiments within 2%. The influence of various physical parameters on the damping was investigated through additional 2D calculations by changing the scale ratio, the roll amplitude, the roll period, the water depth, the origin of rotation and the bilge keel height. Lastly, three-dimensional calculations are carried out with the complete FPSO geometry. The 3D results agree with the 2D results except for the largest roll amplitude calculated, i.e. for 15 degrees, where the damping coefficient was found to be 7% smaller. For this amplitude end-effects from the ends of the bilge keels seem to have a small influence on the flow field around the bilge keels. This indicates that the 2D approach is a cost-effective method to determine the roll damping of a barge-type FPSO, but for large roll amplitudes or for different vessel geometries the 2D approach may not be valid due to 3D effects.


2019 ◽  
Vol 141 (2) ◽  
Author(s):  
Ling Liu ◽  
Ming Yang ◽  
Yaqiong Zhang ◽  
Xinlei Zhu ◽  
Na Ta ◽  
...  

A miniature microphone array based on interaural time difference (ITD) is designed. This array contains four microphones with certain arrangement and aims for two-dimensional (azimuth and elevation) direction-of-arrival (DOA) estimation in the whole three-dimensional space. The array can be small because it uses a coupling algorithm that magnifies the time delay between the signals received by every two microphones. The coupling algorithm is built according to a pairwise-coupled multidimensional mechanical model inspired by the ears of the tiny parasitoid fly Ormia ochracea. It was verified that the time-delay magnification can be independent of the incident angle when the parameters in the model satisfy specific relationships. This paper further investigates the multidimensional coupled system and advocates to realize the magnification mechanism in algorithm, where the physical parameters can change according to sound frequency to ensure the time-delay magnification. Moreover, the arrangement of microphones is specially designed to help the array to achieve similar measuring accuracy for all directions in the three-dimensional space. Corresponding signal process procedures are also provided. Simulations that use such an array to estimate the azimuth and elevation angles of sound source are performed via general cross-correlation (GCC) method. Results verify the feasibility of the microphone array and show that the accuracy of the estimation increases after the signals are processed by the coupled system.


2014 ◽  
Vol 92 (10) ◽  
pp. 1249-1257 ◽  
Author(s):  
M.F. El-Sayed ◽  
N.T. Eldabe ◽  
M.H. Haroun ◽  
D.M. Mostafa

The nonlinear electrohydrodynamic Kelvin–Helmholtz instability of two superposed viscoelastic Walters B′ dielectric fluids in the presence of a tangential electric field is investigated in three dimensions using the potential flow analysis. The method of multiple scales is used to obtain a dispersion relation for the linear problem, and a nonlinear Ginzburg–Landau equation with complex coefficients for the nonlinear problem. The linear and nonlinear stability conditions are obtained and discussed both analytically and numerically. In the linear stability analysis, we found that the fluid velocities and kinematic viscosities have destabilizing effects, and the electric field, kinematic viscoelasticities, and surface tension have stabilizing effects; and that the system in the three-dimensional disturbances is more stable than in the corresponding case of two-dimensional disturbances. While in the nonlinear analysis, for both two- and three-dimensional disturbances, we found that the fluid velocities, surface tension, and kinematic viscosities have destabilizing effects, and the electric field, kinematic viscoelasticities have stabilizing effects, and that the system in the three-dimensional disturbances is more unstable than its behavior in the two-dimensional disturbances for most physical parameters except the kinematic viscosities.


2000 ◽  
Vol 411 ◽  
pp. 325-350 ◽  
Author(s):  
SAEED MORTAZAVI ◽  
GRÉTAR TRYGGVASON

The cross-stream migration of a deformable drop in two-dimensional Hagen–Poiseuille flow at finite Reynolds numbers is studied numerically. In the limit of a small Reynolds number (< 1), the motion of the drop depends strongly on the ratio of the viscosity of the drop fluid to the viscosity of the suspending fluid. For viscosity ratio 0.125 a drop moves toward the centre of the channel, while for ratio 1.0 it moves away from the centre until halted by wall repulsion. The rate of migration increases with the deformability of the drop. At higher Reynolds numbers (5–50), the drop either moves to an equilibrium lateral position about halfway between the centreline and the wall – according to the so-called Segre–Silberberg effect or it undergoes oscillatory motion. The steady-state position depends only weakly on the various physical parameters of the flow, but the length of the transient oscillations increases as the Reynolds number is raised, or the density of the drop is increased, or the viscosity of the drop is decreased. Once the Reynolds number is high enough, the oscillations appear to persist forever and no steady state is observed. The numerical results are in good agreement with experimental observations, especially for drops that reach a steady-state lateral position. Most of the simulations assume that the flow is two-dimensional. A few simulations of three-dimensional flows for a modest Reynolds number (Re = 10), and a small computational domain, confirm the behaviour seen in two dimensions. The equilibrium position of the three-dimensional drop is close to that predicted in the simulations of two-dimensional flow.


2019 ◽  
Vol 631 ◽  
pp. A159 ◽  
Author(s):  
S. Martín ◽  
J. Martín-Pintado ◽  
C. Blanco-Sánchez ◽  
V. M. Rivilla ◽  
A. Rodríguez-Franco ◽  
...  

Context. The increase in bandwidth and sensitivity of state-of-the-art radio observatories is providing a wealth of molecular data from nearby star-forming regions up to high-z galaxies. Analysing large data sets of spectral cubes requires efficient and user-friendly tools optimised for astronomers with a wide range of backgrounds. Aims. In this paper we present the detailed formalism at the core of Spectral Line Identification and Modelling (SLIM) within the MAdrid Data CUBe Analysis (MADCUBA) package and their main data-handling functionalities. These tools have been developed to visualise, analyse, and model large spectroscopic data cubes. Methods. We present the highly interactive on-the-fly visualisation and modelling tools of MADCUBA and SLIM, which includes a stand-alone spectroscopic database. The parameters stored therein are used to solve the full radiative transfer equation under local thermodynamic equilibrium (LTE). The SLIM package provides tools to generate synthetic LTE model spectra based on input physical parameters of column density, excitation temperature, velocity, line width, and source size. It also provides an automatic fitting algorithm to obtain the physical parameters (with their associated errors) better fitting the observations. Synthetic spectra can be overlayed in the data cubes/spectra to ease the task of multi-molecular line identification and modelling. Results. We present the Java-based MADCUBA and its internal module SLIM packages which provide all the necessary tools for manipulation and analysis of spectroscopic data cubes. We describe in detail the spectroscopic fitting equations and make use of this tool to explore the breaking conditions and implicit errors of commonly used approximations in the literature. Conclusions. Easy-to-use tools like MADCUBA allow users to derive physical information from spectroscopic data without the need for simple approximations. The SLIM tool allows the full radiative transfer equation to be used, and to interactively explore the space of physical parameters and associated uncertainties from observational data.


1997 ◽  
Vol 119 (4) ◽  
pp. 466-473 ◽  
Author(s):  
V. L. Rvachev ◽  
T. I. Sheiko ◽  
V. Shapiro ◽  
J. J. Uicker

Solidification of metal castings can be modeled by an implicit real-valued function whose behavior is determined by physical parameters prescribed on the boundary of a casting. We show how to construct such functions using theory of R-functions for two-dimensional castings represented by their boundaries. The parameterized form of the constructed functions is convenient for studying, controlling, and optimizing their behavior in terms of the physical parameters specified on the boundary of the casting. The proposed approach can also be used for modeling multiple cavities in a same sand mold, generalizes to three-dimensional castings, and is applicable to other physical phenomena that may be suitable for analysis based on empirical knowledge.


2012 ◽  
Vol 29 (3) ◽  
pp. 340-351 ◽  
Author(s):  
A. H. Hassan ◽  
C. J. Fluke ◽  
D. G. Barnes

AbstractWe present a framework to volume-render three-dimensional data cubes interactively using distributed ray-casting and volume-bricking over a cluster of workstations powered by one or more graphics processing units (GPUs) and a multi-core central processing unit (CPU). The main design target for this framework is to provide an in-core visualization solution able to provide three-dimensional interactive views of terabyte-sized data cubes. We tested the presented framework using a computing cluster comprising 64 nodes with a total of 128 GPUs. The framework proved to be scalable to render a 204 GB data cube with an average of 30 frames per second. Our performance analyses also compare the use of NVIDIA Tesla 1060 and 2050 GPU architectures and the effect of increasing the visualization output resolution on the rendering performance. Although our initial focus, as shown in the examples presented in this work, is volume rendering of spectral data cubes from radio astronomy, we contend that our approach has applicability to other disciplines where close to real-time volume rendering of terabyte-order three-dimensional data sets is a requirement.


Author(s):  
H.A. Cohen ◽  
T.W. Jeng ◽  
W. Chiu

This tutorial will discuss the methodology of low dose electron diffraction and imaging of crystalline biological objects, the problems of data interpretation for two-dimensional projected density maps of glucose embedded protein crystals, the factors to be considered in combining tilt data from three-dimensional crystals, and finally, the prospects of achieving a high resolution three-dimensional density map of a biological crystal. This methodology will be illustrated using two proteins under investigation in our laboratory, the T4 DNA helix destabilizing protein gp32*I and the crotoxin complex crystal.


Author(s):  
B. Ralph ◽  
A.R. Jones

In all fields of microscopy there is an increasing interest in the quantification of microstructure. This interest may stem from a desire to establish quality control parameters or may have a more fundamental requirement involving the derivation of parameters which partially or completely define the three dimensional nature of the microstructure. This latter categorey of study may arise from an interest in the evolution of microstructure or from a desire to generate detailed property/microstructure relationships. In the more fundamental studies some convolution of two-dimensional data into the third dimension (stereological analysis) will be necessary.In some cases the two-dimensional data may be acquired relatively easily without recourse to automatic data collection and further, it may prove possible to perform the data reduction and analysis relatively easily. In such cases the only recourse to machines may well be in establishing the statistical confidence of the resultant data. Such relatively straightforward studies tend to result from acquiring data on the whole assemblage of features making up the microstructure. In this field data mode, when parameters such as phase volume fraction, mean size etc. are sought, the main case for resorting to automation is in order to perform repetitive analyses since each analysis is relatively easily performed.


Author(s):  
Yu Liu

The image obtained in a transmission electron microscope is the two-dimensional projection of a three-dimensional (3D) object. The 3D reconstruction of the object can be calculated from a series of projections by back-projection, but this algorithm assumes that the image is linearly related to a line integral of the object function. However, there are two kinds of contrast in electron microscopy, scattering and phase contrast, of which only the latter is linear with the optical density (OD) in the micrograph. Therefore the OD can be used as a measure of the projection only for thin specimens where phase contrast dominates the image. For thick specimens, where scattering contrast predominates, an exponential absorption law holds, and a logarithm of OD must be used. However, for large thicknesses, the simple exponential law might break down due to multiple and inelastic scattering.


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